Chy12G207170 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207170
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Girdin-like
Location	chrH12: 1297513 .. 1298660 (-)
RNA-Seq Expression	Chy12G207170
Synteny	Chy12G207170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAACACAGTTAGTGAATTTGGTATGTCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGGGTGTCTTTCTTTTCAACATTGAGTTCTGTAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAATTATACACCATTGTTAGTTTTGCGTCAGGTGGGGCTCAAACAGTTTATACCACACCAACTCATAATCTACAAGAGTCTGACTTTTCATATGATCTTGAAGACTGTCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAAGAAGATAAAAGACAAAGAACACTATGAAGGGTTACCAGTGGATATGAGGCATGGCAGACAAACAGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAAGGTAGAAGAGACGAGCTCTGAACAACCAGACCAGTGGGTTGAGTAGACCATTAAATTAGAAGAGAAAAATCGACTCTTAGAGCAAGAGAATGAGAAACTTCAAAAGGAGACGAGCCAATGGATGGATCATGTGACTTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAGTCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCTAATGAATAAAGCGAATAGAAGCTTAAAAAATGAAAAGACAATATTACAGCCAACAGTAGAATCGCAAGATGAATGTATTAAAGATTTAGAAAGCAGGAAGGAATATTCTCTCAAGCTTGTAAATGATTTGAATACATCAATTGGTAAACAGGAAGCACAAATAGTAGATTTGGAAGTACACAATCAGTCTCTACGCCAAACTGTTGATAGCCTACATGTGAAGATGGTCTAGCACTCTGAAGAGTATAAGATACTGAAAATTTTTGCTGATTCCTTACACCATCAATTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAATTATTGAAGACAGATTAAACGTAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCGTTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAAAAGAGCAAATG

mRNA sequence

ATGCGAAACACAGTTAGTGAATTTGGTATGTCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGGGTGTCTTTCTTTTCAACATTGAGTTCTGTAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAATTATACACCATTGTTAGTTTTGCGTCAGGTGGGGCTCAAACAGTTTATACCACACCAACTCATAATCTACAAGAGTCTGACTTTTCATATGATCTTGAAGACTGTCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAAGAAGATAAAAGACAAAGAACACTATGAAGGGTTACCAGTGGATATGAGGCATGGCAGACAAACAGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAAGGTAGAAGAGACGAGCTCTGAACAACCAGACCAGTGGGTTGAGTAGACCATTAAATTAGAAGAGAAAAATCGACTCTTAGAGCAAGAGAATGAGAAACTTCAAAAGGAGACGAGCCAATGGATGGATCATGTGACTTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAGTCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCTAATGAATAAAGCGAATAGAAGCTTAAAAAATGAAAAGACAATATTACAGCCAACAGTAGAATCGCAAGATGAATGTATTAAAGATTTAGAAAGCAGGAAGGAATATTCTCTCAAGCTTGTAAATGATTTGAATACATCAATTGGTAAACAGGAAGCACAAATAGTAGATTTGGAAGTACACAATCAGTCTCTACGCCAAACTGTTGATAGCCTACATGTGAAGATGGTCTAGCACTCTGAAGAGTATAAGATACTGAAAATTTTTGCTGATTCCTTACACCATCAATTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAATTATTGAAGACAGATTAAACGTAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCGTTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAAAAGAGCAAATG

Coding sequence (CDS)

ATGCGAAACACAGTTAGTGAATTTGGTATGTCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGGGTGTCTTTCTTTTCAACATTGAGTTCTGTAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAAGGCAGTAATTTACAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAATTATACACCATTGTTAGTTTTGCGTCAGGTGGGGCTCAAACAGTTTATACCACACCAACTCATAATCTACAAGAGTCTGACTTTTCATATGATCTTGAAGACTGTCAAGGAAAAAAACATCGAGCAGTATGTGCATGGAAGTCTGTGAAGAAGATAAAAGACAAAGAACACTATGAAGGGTTACCAGTGGATATGAGGCATGGCAGACAAACAGAAGGAAGAATGTAATATATACCTTAAGGGAGGTAGTTGAAAAGGTAGAAGAGACGAGCTCTGAACAACCAGACCAGTGGGTTGAGTAGACCATTAAATTAGAAGAGAAAAATCGACTCTTAGAGCAAGAGAATGAGAAACTTCAAAAGGAGACGAGCCAATGGATGGATCATGTGACTTTTTTGCAGAAAGAGCTTGAAAAGACCAAGAGTTTCTTAAAAAGTCAAGATAAGTTAGAAAAGAATCTTGAGGTGTTAGATAAAGAGATGAGGCTAATGAATAAAGCGAATAGAAGCTTAAAAAATGAAAAGACAATATTACAGCCAACAGTAGAATCGCAAGATGAATGTATTAAAGATTTAGAAAGCAGGAAGGAATATTCTCTCAAGCTTGTAAATGATTTGAATACATCAATTGGTAAACAGGAAGCACAAATAGTAGATTTGGAAGTACACAATCAGTCTCTACGCCAAACTGTTGATAGCCTACATGTGAAGATGGTCTAGCACTCTGAAGAGTATAAGATACTGAAAATTTTTGCTGATTCCTTACACCATCAATTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAATTATTGAAGACAGATTAAACGTAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTTCAAGCGTTAGTTGAACGTGTAGATCAAACAATTGGATTTCTCAGAATAGTGTCTAAAAGAGCAAATG

Protein sequence

MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVGLKQFIPHQLIIYKSLTFHMILKTVKEKNIEQYVHGSL*RR*KTKNTMKGYQWI*GMADKQKEECNIYLKGGS*KGRRDEL*TTRPVG*VDH*IRREKSTLRARE*ETSKGDEPMDGSCDFFAERA*KDQEFLKKSR*VRKES*GVR*RDEANE*SE*KLKK*KDNITANSRIAR*MY*RFRKQEGIFSQACK*FEYINW*TGSTNSRFGSTQSVSTPNC**PTCEDGLAL*RV*DTENFC*FLTPSIYCISKFK*EDSARIRIIEDRLNVNEG*L*FAKERFSSVS*TCRSNNWISQNSV*KSKX

Homology

[Close]

BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match: A0A5A7TAR5 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00080 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.5e-39
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFG++VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSV LL
Sbjct: 44  MRNTISEFGLAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVSLL 103

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIPHQLIIYKSLTFHMILKTVKEKNIEQYVHGSL 116
           GPW GVNYTPLLVLRQ+  KQFIP    + +S  F    +  + KN+EQY HG+L
Sbjct: 104 GPWRGVNYTPLLVLRQMWFKQFIPPTHNLQES-DFSYDPEDCQGKNVEQYAHGNL 157

[Close]

BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-38
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 257 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 316

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 85
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 317 GPWGGVNYTPLLVLRQVWLKQFIP 340

[Close]

BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-38
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 236 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 295

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 85
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 296 GPWGGVNYTPLLVLRQVWLKQFIP 319

[Close]

BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match: A0A5A7T494 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002790 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S N IWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 107 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENFIWKAQWMPLKAVIYRCGDFHSVPLL 166

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 85
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 167 GPWGGVNYTPLLVLRQVWLKQFIP 190

[Close]

BLAST of Chy12G207170 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEF M+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 68  MRNTISEFAMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 127

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 85
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 128 GPWGGVNYTPLLVLRQVWLKQFIP 151

[Close]

BLAST of Chy12G207170 vs. NCBI nr
Match: KAA0040173.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 3.01e-48
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFG++VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSV LL
Sbjct: 44  MRNTISEFGLAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVSLL 103

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIPHQLIIYKSLTFHMILKTVKEKNIEQYVHGSL 115
           GPW GVNYTPLLVLRQ+  KQFIP    + +S  F    +  + KN+EQY HG+L
Sbjct: 104 GPWRGVNYTPLLVLRQMWFKQFIPPTHNLQES-DFSYDPEDCQGKNVEQYAHGNL 157

[Close]

BLAST of Chy12G207170 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 2.55e-47
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFGM+VW+PTYPKKETWVSFFSTLSS +VIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 107 MRNTISEFGMAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLL 166

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 84
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 167 GPWGGVNYTPLLVLRQVWLKQFIP 190

[Close]

BLAST of Chy12G207170 vs. NCBI nr
Match: XP_031740432.1 (uncharacterized protein LOC116403430 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 5.12e-47
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFGM+VW+PTYPKKETWVSFFSTLSS +VIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 106 MRNTISEFGMAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLL 165

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 84
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 166 GPWGGVNYTPLLVLRQVWLKQFIP 189

[Close]

BLAST of Chy12G207170 vs. NCBI nr
Match: KAA0037618.1 (uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 4.17e-46
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEFGM+VWDPTYP+KE W+SFF+ L+S N IWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 107 MRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENFIWKAQWMPLKAVIYRCGDFHSVPLL 166

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 84
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 167 GPWGGVNYTPLLVLRQVWLKQFIP 190

[Close]

BLAST of Chy12G207170 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 5.05e-46
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1   MRNTVSEFGMSVWDPTYPKKETWVSFFSTLSSVNVIWKAQWMPLKAVIYRCGDFHSVPLL 60
           MRNT+SEF M+VWDPTYP+KE W+SFF+ L+S NVIWKAQWMPLKAVIYRCGDFHSVPLL
Sbjct: 68  MRNTISEFAMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLL 127

Query: 61  GPWGGVNYTPLLVLRQVGLKQFIP 84
           GPWGGVNYTPLLVLRQV LKQFIP
Sbjct: 128 GPWGGVNYTPLLVLRQVWLKQFIP 151

The following BLAST results are available for this feature:

BLAST of Chy12G207170 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G207170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAR5	9.5e-39	68.70	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00080 PE...	[more]
A0A5A7T5S7	2.8e-38	88.10	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5A7T1W2	2.8e-38	88.10	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T494	1.1e-37	86.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BYI1	1.4e-37	86.90	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE...	[more]

BLAST of Chy12G207170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040173.1	3.01e-48	68.70	girdin-like [Cucumis melo var. makuwa]	[more]
XP_031739496.1	2.55e-47	92.86	uncharacterized protein LOC116403043 [Cucumis sativus]	[more]
XP_031740432.1	5.12e-47	92.86	uncharacterized protein LOC116403430 [Cucumis sativus]	[more]
KAA0037618.1	4.17e-46	86.90	uncharacterized protein E6C27_scaffold277G002790 [Cucumis melo var. makuwa]	[more]
KAA0046902.1	5.05e-46	86.90	girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var...	[more]

BLAST of Chy12G207170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..187
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 16..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207170.1	Chy12G207170.1	mRNA