Chy12G206450.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G206450.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	MADS-box transcription factor
Location	chrH12: 397024 .. 399132 (-)
Sequence length	543
RNA-Seq Expression	Chy12G206450.1
Synteny	Chy12G206450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAGATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATTGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAGCTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATACGCAAACAACAGGTCTCATCTGTGATCTCCATATTCTCCATCTCTTGAATGATATGATATTAAATTTATTTTTACTCATCTGTTTAAAATTTAGGGTCGATCAGTGATTCAAGAGTTTCTACGTAGGAATTTATATGGATCTGGTTTAAAGAAATAAAAAAAATTGAAGGATCTTTTAGGATTTAAAAAAAAAATTGTGTAGGATGATCACCATGAGAGATTTAAGAATATTTTGATGGGATTTTAATTAATAATGTTTTGAAATGTAAACTATAATATTTTTTATTATTGATCTCAAAGTTTGATGATGGATTACTAATAATCCACGTAATTAGGAAAATAAATCATAATCAAGCAATTTGAAGAGAAATTTTGTTTGAAAGTTTCACAGTTAGGGTTTGATATTCAGCATACATCAGCGAATCTTTGATTACATCATAAAAATGGATTATTTCGATCTGTTATATGAATATGAACCCCTGCCTTTTGTTTTCTTTTTTCTTTTTCTTTTGTCATTATTCTTTAAATGCTTTTGCTGAATTATTATTACTATTTTTTATATAAAATTTAAAAAAATTTAAGGTTTGTTTTCATTTCATTTTGATATATATAAATATATAAATTTATTTAGTGTCTGTGTCACTAATGTTATAAATTAGAATAATATTTTATCTTTACAAAATATAATTATGAAACATATTCACATATAGTAATTTTCTTTTACATGAAAATTATGATTTACTTAACACATTCCATATAATTTAGTAGCCCAAGGTGGAAGTTAAGCATTGCATTTAAAGCTTTAAATCAGATTAAAACCTCAAAAACTTAAAATGAAGCAATCATTTTGCCATTACTTTTTTCTTTTATTAATTGAAAGAAAAAGAGAAAAACACATGAAACTGAAAAATAGAAATAAAACAAACAAAGAAATAATGAAGAAATTTGAAGCAGTGAAAAGATAGGATATTTTGTAGAAAGATTTGAGAGAGAGATAAAATGAGAAGCTTTAAGCAAGCAGCTGCAGGTTTCTGGGCATTGCTATAATAATGAAAAACAAAATAAATGTAGGTTTGACTTTCATGGATTTTGATTCAATGACCATATTTTGAAGAAGAGATTATTAAATTGGTTTATATCATTTTAAGATAATCATCAATAGAGTAATTTATAGAATTTCGTGACACAAAGGAAAAAGTCTGTAATGCTTCATTTTGTCGTTAATATCTGCCCAATACCATTCGTATCACAATTACATTTTTTGTTTGGGGAAATGAAGTGTTGGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGACCGTTTCAGAAGCCAATACTCAGGTGATCAGCTATCTCTCCATTTTTAGGGTTTCATTCTAAATTCTAAATTGTGAATTCCTCCTTCTCTTCTGTTTATGTTTCAGTTCTACCAGCAAGAATCTGCCAAATTACGAGCTCAAATCGGAAATTTGCAAAACCTAAACAGGTAATTCATATAAATGAATTAATTTATGTGTGAGTATATTTGAATTTGGATGGATGATGATGATAATTGTGGGTGTGAATGGTTGGAATTAATAAAATTTAATTGAAGGCATTTGTTGGGGGAATCCATCAGTTCGTTATCAGTTAAAGATTTGAAAAGCCTAGAGGTGAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGGTTCATTTTCATTCTTAATTATTTAAAACACATATACATAATTAATTAATTAATTAATTTAGATTTTCATTAACTATATAATGTGTTGTTTTTGTTTTTGTGTTACAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAAAGGGTATAA

mRNA sequence

ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAGATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATTGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAGCTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATACGCAAACAACAGTGTTGGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGACCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCTGCCAAATTACGAGCTCAAATCGGAAATTTGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTATCAGTTAAAGATTTGAAAAGCCTAGAGGTGAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAAAGGGTATAA

Coding sequence (CDS)

ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAGATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATTGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAGCTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATACGCAAACAACAGTGTTGGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGACCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCTGCCAAATTACGAGCTCAAATCGGAAATTTGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTATCAGTTAAAGATTTGAAAAGCCTAGAGGTGAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAAAGGGTATAA

Protein sequence

MSCYEEEDEESGVVGLRRSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKRV*

Homology

[Close]

BLAST of Chy12G206450.1 vs. ExPASy Swiss-Prot
Match: Q43585 (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum OX=4097 GN=AG1 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.0e-65
Identity = 129/161 (80.12%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 19  SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 78
           S   + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 79  EYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGES 138
           EYANNSV ATI RYKKA SD S   ++SEAN Q+YQQE++KLRAQIGNLQN NR++LGES
Sbjct: 72  EYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGES 131

Query: 139 ISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           +++LS++DLK+LE K+EKGIS+IRS+KNELLF+EIEYMQKR
Sbjct: 132 LAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKR 172

[Close]

BLAST of Chy12G206450.1 vs. ExPASy Swiss-Prot
Match: Q93XH4 (Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-63
Identity = 127/155 (81.94%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 25  GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 84
           GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS
Sbjct: 2   GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 61

Query: 85  VGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSV 144
           V  TI RYKK  SD S   +VSEAN QFYQQE++KLR QI ++QNLNRH+LGE++SSL+ 
Sbjct: 62  VRTTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNF 121

Query: 145 KDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           K+LK+LE +LEKGISRIRS+KNELLF+EIEYMQKR
Sbjct: 122 KELKNLETRLEKGISRIRSKKNELLFAEIEYMQKR 156

[Close]

BLAST of Chy12G206450.1 vs. ExPASy Swiss-Prot
Match: Q40885 (Floral homeotic protein AGAMOUS OS=Petunia hybrida OX=4102 GN=AG1 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-63
Identity = 125/161 (77.64%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 19  SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 78
           S   + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 71

Query: 79  EYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGES 138
           EYANNSV ATI RYKKA SD S   +++EAN Q+YQQE++KLRAQIGNLQN NR+ LGES
Sbjct: 72  EYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGES 131

Query: 139 ISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           +++L+++DL++LE K+EKGIS+IR++KNELLF+EIEYMQKR
Sbjct: 132 LAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKR 172

[Close]

BLAST of Chy12G206450.1 vs. ExPASy Swiss-Prot
Match: Q40168 (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.6e-62
Identity = 122/161 (75.78%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 19  SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLY 78
           S   + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLY
Sbjct: 12  SPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLY 71

Query: 79  EYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGES 138
           EYANNSV ATI RYKKA SD S   +VSEAN Q+YQQE++KLRAQIGNL N NR+++GE+
Sbjct: 72  EYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEA 131

Query: 139 ISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           ++ + +K+LK+LE ++EKGIS+IRS+KNELLF+EIEYMQKR
Sbjct: 132 LAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKR 172

[Close]

BLAST of Chy12G206450.1 vs. ExPASy Swiss-Prot
Match: P29385 (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana OX=3702 GN=AGL5 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.2e-62
Identity = 123/170 (72.35%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 10  ESGVVGLRRSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALI 69
           E G       SS + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+
Sbjct: 2   EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 61

Query: 70  VFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQN 129
           +FS+RGRLYEYANNSV  TI RYKKA SD     T++EANTQ+YQQE++KLR QI ++QN
Sbjct: 62  IFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQN 121

Query: 130 LNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           LNRH+LGES+ SL+ K+LK+LE +LEKGISR+RS+K+E+L +EIEYMQKR
Sbjct: 122 LNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKR 171

[Close]

BLAST of Chy12G206450.1 vs. ExPASy TrEMBL
Match: Q43422 (Putative transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G467100 PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRR-SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLRR SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAMTVSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. ExPASy TrEMBL
Match: Q9SBK2 (Agamous-like putative transcription factor OS=Cucumis sativus OX=3659 GN=CAG2 PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRR-SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLRR SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAMTVSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. ExPASy TrEMBL
Match: A0A1S3B8P7 (floral homeotic protein AGAMOUS-like OS=Cucumis melo OX=3656 GN=LOC103487219 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 175/180 (97.22%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRR-SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLR+ SSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRKSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAM+VSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMSVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKG+SRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. ExPASy TrEMBL
Match: A0A6J1CDJ2 (floral homeotic protein AGAMOUS-like OS=Momordica charantia OX=3673 GN=LOC111010689 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 23  RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 82
           R+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRGRLYEYAN
Sbjct: 14  RSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 73

Query: 83  NSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSL 142
           NSV ATISRYKKA SDPS+A +VSEAN QFYQQESAKLR+QIGNLQNLNRHLLG+SISSL
Sbjct: 74  NSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSL 133

Query: 143 SVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           SVKDLKSLEVKLEKGISRIRSRKNELLF+EIEYMQKR
Sbjct: 134 SVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKR 170

[Close]

BLAST of Chy12G206450.1 vs. ExPASy TrEMBL
Match: A0A6J1EP10 (floral homeotic protein AGAMOUS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434283 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 145/175 (82.86%), Postives = 160/175 (91.43%), Query Frame = 0


Query: 5   EEEDEESGVVGLRRSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 64
           +++ ++    G  +S   R+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA
Sbjct: 8   QKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDA 67

Query: 65  EVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQI 124
           EVALIVFS+RGRLYEYANNSV ATISRYKKA SDP +A +VSEANTQFY+QESAKLRAQI
Sbjct: 68  EVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQESAKLRAQI 127

Query: 125 GNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           GN+QNLNRHLLGESISSLSVKDLKSL+VKLEKGISRIRSRKNE+LF+EIEYM KR
Sbjct: 128 GNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKR 182

[Close]

BLAST of Chy12G206450.1 vs. NCBI nr
Match: XP_031740178.1 (floral homeotic protein AGAMOUS-like isoform X2 [Cucumis sativus])

HSP 1 Score: 333 bits (854), Expect = 8.13e-114
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRRSSSS-RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLRRSSSS RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAMTVSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. NCBI nr
Match: AAD01743.1 (agamous-like putative transcription factor [Cucumis sativus])

HSP 1 Score: 332 bits (851), Expect = 3.78e-113
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRRSSSS-RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLRRSSSS RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAMTVSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 179
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. NCBI nr
Match: NP_001267656.1 (floral homeotic protein AGAMOUS-like [Cucumis sativus] >XP_011651593.1 floral homeotic protein AGAMOUS-like isoform X1 [Cucumis sativus] >KGN65590.1 hypothetical protein Csa_019573 [Cucumis sativus] >CAA66388.1 putative transcription factor [Cucumis sativus])

HSP 1 Score: 332 bits (851), Expect = 3.78e-113
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRRSSSS-RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLRRSSSS RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAMTVSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 179
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. NCBI nr
Match: XP_008443694.1 (PREDICTED: floral homeotic protein AGAMOUS-like [Cucumis melo])

HSP 1 Score: 328 bits (842), Expect = 9.51e-112
Identity = 175/180 (97.22%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSCYEEEDEESGVVGLRRSSSS-RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           MSCYEEEDEESGVVGLR+SSSS RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MSCYEEEDEESGVVGLRKSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALIVFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAK 120
           VLCDAEVALIVFSSRGRLYEYANNSV ATISRYKKAYSDPSTAM+VSEANTQFYQQESAK
Sbjct: 61  VLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMSVSEANTQFYQQESAK 120

Query: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 179
           LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKG+SRIRSRKNELLFSEIEYMQKR
Sbjct: 121 LRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKR 180

[Close]

BLAST of Chy12G206450.1 vs. NCBI nr
Match: XP_022139885.1 (floral homeotic protein AGAMOUS-like [Momordica charantia])

HSP 1 Score: 278 bits (711), Expect = 5.82e-92
Identity = 146/157 (92.99%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 23  RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 82
           R+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRGRLYEYAN
Sbjct: 14  RSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 73

Query: 83  NSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSL 142
           NSV ATISRYKKA SDPS+A +VSEAN QFYQQESAKLR+QIGNLQNLNRHLLG+SISSL
Sbjct: 74  NSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSL 133

Query: 143 SVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 179
           SVKDLKSLEVKLEKGISRIRSRKNELLF+EIEYMQKR
Sbjct: 134 SVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKR 170

[Close]

BLAST of Chy12G206450.1 vs. TAIR 10
Match: AT2G42830.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-63
Identity = 124/171 (72.51%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 10  ESGVVGLRRSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALI 69
           E G       SS + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+
Sbjct: 2   EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 61

Query: 70  VFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQN 129
           +FS+RGRLYEYANNSV  TI RYKKA SD     T++EANTQ+YQQE++KLR QI ++QN
Sbjct: 62  IFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQN 121

Query: 130 LNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKRV 181
           LNRH+LGES+ SL+ K+LK+LE +LEKGISR+RS+K+E+L +EIEYMQKRV
Sbjct: 122 LNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKRV 172

[Close]

BLAST of Chy12G206450.1 vs. TAIR 10
Match: AT2G42830.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.4e-63
Identity = 123/170 (72.35%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 10  ESGVVGLRRSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALI 69
           E G       SS + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+
Sbjct: 2   EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 61

Query: 70  VFSSRGRLYEYANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQN 129
           +FS+RGRLYEYANNSV  TI RYKKA SD     T++EANTQ+YQQE++KLR QI ++QN
Sbjct: 62  IFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQN 121

Query: 130 LNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           LNRH+LGES+ SL+ K+LK+LE +LEKGISR+RS+K+E+L +EIEYMQKR
Sbjct: 122 LNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKR 171

[Close]

BLAST of Chy12G206450.1 vs. TAIR 10
Match: AT3G58780.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 235.7 bits (600), Expect = 2.9e-62
Identity = 121/160 (75.62%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 20  SSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE 79
           SS + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYE
Sbjct: 12  SSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYE 71

Query: 80  YANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESI 139
           YANNSV  TI RYKKA SD     +V+EANTQ+YQQE++KLR QI ++QN NRH++GES+
Sbjct: 72  YANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESL 131

Query: 140 SSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
            SL+ K+LK+LE +LEKGISR+RS+KNELL +EIEYMQKR
Sbjct: 132 GSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKR 171

[Close]

BLAST of Chy12G206450.1 vs. TAIR 10
Match: AT4G18960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-60
Identity = 120/157 (76.43%), Postives = 139/157 (88.54%), Query Frame = 0


Query: 23  RTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 82
           ++GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+N
Sbjct: 16  KSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 75

Query: 83  NSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSL 142
           NSV  TI RYKKA SD S   +V+E N Q+YQQESAKLR QI ++QN NR L+GE+I S+
Sbjct: 76  NSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSM 135

Query: 143 SVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
           S K+L++LE +LE+ I+RIRS+KNELLFSEI+YMQKR
Sbjct: 136 SPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKR 172

[Close]

BLAST of Chy12G206450.1 vs. TAIR 10
Match: AT3G58780.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-58
Identity = 117/160 (73.12%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 20  SSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE 79
           SS + GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYE
Sbjct: 12  SSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYE 71

Query: 80  YANNSVGATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESI 139
           YANN       RYKKA SD     +V+EANTQ+YQQE++KLR QI ++QN NRH++GES+
Sbjct: 72  YANN-------RYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESL 131

Query: 140 SSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKR 180
            SL+ K+LK+LE +LEKGISR+RS+KNELL +EIEYMQKR
Sbjct: 132 GSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKR 164

The following BLAST results are available for this feature:

BLAST of Chy12G206450.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43585	6.0e-65	80.12	Floral homeotic protein AGAMOUS OS=Nicotiana tabacum OX=4097 GN=AG1 PE=2 SV=1	[more]
Q93XH4	1.1e-63	81.94	Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=...	[more]
Q40885	2.5e-63	77.64	Floral homeotic protein AGAMOUS OS=Petunia hybrida OX=4102 GN=AG1 PE=1 SV=1	[more]
Q40168	3.6e-62	75.78	Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1	[more]
P29385	6.2e-62	72.35	Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana OX=3702 GN=AGL5 PE=1 ...	[more]

BLAST of Chy12G206450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q43422	1.7e-86	98.89	Putative transcription factor OS=Cucumis sativus OX=3659 GN=Csa_1G467100 PE=2 SV...	[more]
Q9SBK2	1.7e-86	98.89	Agamous-like putative transcription factor OS=Cucumis sativus OX=3659 GN=CAG2 PE...	[more]
A0A1S3B8P7	1.9e-85	97.22	floral homeotic protein AGAMOUS-like OS=Cucumis melo OX=3656 GN=LOC103487219 PE=...	[more]
A0A6J1CDJ2	1.7e-70	92.99	floral homeotic protein AGAMOUS-like OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1EP10	1.9e-69	82.86	floral homeotic protein AGAMOUS-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Chy12G206450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740178.1	8.13e-114	98.34	floral homeotic protein AGAMOUS-like isoform X2 [Cucumis sativus]	[more]
AAD01743.1	3.78e-113	98.89	agamous-like putative transcription factor [Cucumis sativus]	[more]
NP_001267656.1	3.78e-113	98.89	floral homeotic protein AGAMOUS-like [Cucumis sativus] >XP_011651593.1 floral ho...	[more]
XP_008443694.1	9.51e-112	97.22	PREDICTED: floral homeotic protein AGAMOUS-like [Cucumis melo]	[more]
XP_022139885.1	5.82e-92	92.99	floral homeotic protein AGAMOUS-like [Momordica charantia]	[more]

BLAST of Chy12G206450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42830.2	1.2e-63	72.51	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.1	4.4e-63	72.35	K-box region and MADS-box transcription factor family protein	[more]
AT3G58780.1	2.9e-62	75.63	K-box region and MADS-box transcription factor family protein	[more]
AT4G18960.1	2.1e-60	76.43	K-box region and MADS-box transcription factor family protein	[more]
AT3G58780.2	1.1e-58	73.13	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 26..46 score: 72.99 coord: 61..82 score: 65.68 coord: 46..61 score: 86.34
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 24..83 e-value: 2.9E-41 score: 153.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 33..80 e-value: 8.2E-27 score: 92.5
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 26..80
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 24..84 score: 33.37505
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 107..179 e-value: 3.6E-23 score: 81.6
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 110..180 score: 13.462893
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 36..107 e-value: 3.5E-28 score: 99.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 25..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 25..179
None	No IPR available	PANTHER	PTHR48019:SF99	AGAMOUS-LIKE MADS-BOX PROTEIN AGL11	coord: 25..179
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 28..94 e-value: 2.91378E-40 score: 129.209

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G206450	Chy12G206450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G206450.1.exon5	Chy12G206450.1.exon5	exon
Chy12G206450.1.exon4	Chy12G206450.1.exon4	exon
Chy12G206450.1.exon3	Chy12G206450.1.exon3	exon
Chy12G206450.1.exon2	Chy12G206450.1.exon2	exon
Chy12G206450.1.exon1	Chy12G206450.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G206450.1.cds5	Chy12G206450.1.cds5	CDS
Chy12G206450.1.cds4	Chy12G206450.1.cds4	CDS
Chy12G206450.1.cds3	Chy12G206450.1.cds3	CDS
Chy12G206450.1.cds2	Chy12G206450.1.cds2	CDS
Chy12G206450.1.cds1	Chy12G206450.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G206450.1	Chy12G206450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding