Chy11G195820 (gene) Cucumber (hystrix) v1

Overview
NameChy11G195820
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 14166674 .. 14167168 (-)
RNA-Seq ExpressionChy11G195820
SyntenyChy11G195820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTGTGGTGCAGTTGTAAATTTGTACGGCGGCATTTGCAAGCTGTTGTGTTTAGATCTGGTAGTAATATTATTGCATTTGTTGCTATTATTTTGCAGCTAGCACCAATTATATCTTAGAATTTTCAACTTCTTAATTCTGGACAGCTCATCTCTGTGTTGCTTCACTCTTCTTTCTTCTACTGTCTCAACTACTTCTCTGTTTCTCTTTTAAGCCAATTGTGTAGCCTCAAGTTGGTTGGTTGGTTTGTTTTGTTGTTTGACTGGTCTTTGCTACACTCTGTTGTACATTTGTGAATACTGTGGACTTGTGTAATGATCAATTTATGGGCATTAACAATACTTAATGGAAAAGGAAAGGAAAGGAAAGGACACTGCTTCATAATTGCTTGCTCTTACTTTCTCCTGCAACAATTTAGTTTGCTCTTGTTTGCATTGCCATAATGGCGTTTACAGCTCAAGCTTAATCTTGAATGATGCTTTGTAA

mRNA sequence

ATGGCAGCAGCTTGTGGTGCAGTTGTAAATTTGTACGGCGGCATTTGCAAGCTGTTGTGTTTAGATCTGCTCATCTCTGTGTTGCTTCACTCTTCTTTCTTCTACTGTCTCAACTACTTCTCTGTTTCTCTTTTAAGCCAATTGTGTAGCCTCAAGTTGGTTGGTTGGTTTGTTTTGTTGTTTGACTGGTCTTTGCTACACTCTGTTGTACATTTGTGAATACTGTGGACTTGTGTAATGATCAATTTATGGGCATTAACAATACTTAATGGAAAAGGAAAGGAAAGGAAAGGACACTGCTTCATAATTGCTTGCTCTTACTTTCTCCTGCAACAATTTAGTTTGCTCTTGTTTGCATTGCCATAATGGCGTTTACAGCTCAAGCTTAATCTTGAATGATGCTTTGTAA

Coding sequence (CDS)

ATGGCAGCAGCTTGTGGTGCAGTTGTAAATTTGTACGGCGGCATTTGCAAGCTGTTGTGTTTAGATCTGCTCATCTCTGTGTTGCTTCACTCTTCTTTCTTCTACTGTCTCAACTACTTCTCTGTTTCTCTTTTAAGCCAATTGTGTAGCCTCAAGTTGGTTGGTTGGTTTGTTTTGTTGTTTGACTGGTCTTTGCTACACTCTGTTGTACATTTGTGAATACTGTGGACTTGTGTAATGATCAATTTATGGGCATTAACAATACTTAATGGAAAAGGAAAGGAAAGGAAAGGACACTGCTTCATAATTGCTTGCTCTTACTTTCTCCTGCAACAATTTAGTTTGCTCTTGTTTGCATTGCCATAATGGCGTTTACAGCTCAAGCTTAATCTTGAATGATGCTTTGTAA

Protein sequence

MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFYCLNYFSVSLLSQLCSLKLVGWFVLLFDWSLLHSVVHL*ILWTCVMINLWALTILNGKGKERKGHCFIIACSYFLLQQFSLLLFALP*WRLQLKLNLE*CFVX
Homology
[Close]
BLAST of Chy11G195820 vs. ExPASy TrEMBL
Match: A0A0A0KC24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G179450 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 1  MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFYCLNYFSVSLLSQLCSLKLVGWFVLL 60
          MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFF CLNYFSVSLLSQLC LKLVGWFVLL
Sbjct: 1  MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL 60

Query: 61 FDWSLLHSVVHL*ILWTCVMINLWAL-TILNGKGKER 97
          FDWSLLHSVVHL ILWTCVMINLWAL TILNGK KER
Sbjct: 61 FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKER 97

[Close]
BLAST of Chy11G195820 vs. NCBI nr
Match: KGN47038.1 (hypothetical protein Csa_020973 [Cucumis sativus])

HSP 1 Score: 174 bits (441), Expect = 3.20e-53
Identity = 92/97 (94.85%), Postives = 92/97 (94.85%), Query Frame = 0 

Query: 1  MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFYCLNYFSVSLLSQLCSLKLVGWFVLL 60
          MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFF CLNYFSVSLLSQLC LKLVGWFVLL
Sbjct: 1  MAAACGAVVNLYGGICKLLCLDLLISVLLHSSFFCCLNYFSVSLLSQLCILKLVGWFVLL 60

Query: 61 FDWSLLHSVVHL*ILWTCVMINLWALT-ILNGKGKER 96
          FDWSLLHSVVHL ILWTCVMINLWALT ILNGK KER
Sbjct: 61 FDWSLLHSVVHLGILWTCVMINLWALTTILNGKEKER 97

The following BLAST results are available for this feature:
BLAST of Chy11G195820 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G195820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC242.4e-4094.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G179450 PE=4 SV=1[more]
BLAST of Chy11G195820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47038.13.20e-5394.85hypothetical protein Csa_020973 [Cucumis sativus][more]
BLAST of Chy11G195820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G195820.1Chy11G195820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane