Chy6G120000 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G120000
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Translocon-associated protein subunit beta
Location	chrH06: 16023973 .. 16026154 (-)
RNA-Seq Expression	Chy6G120000
Synteny	Chy6G120000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCTCCTATGATCCATCTTCTCTTCGCTTTTCTCTTCCTCTCCTCAACCATCGCAACCTCCGATGTTCCATTCATTGTCGCCCACAAGAAGGCCTCCCTCACCCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCAATCGACATTTACAATCAGGGATCTTCGTATGTTCTCTTCCTTTCCTTCAATCTGATTTCTCTTTTCTTTTCTAGATTCACCTTGACTTACTACTCTCTGCTCTCTCACTTGTAGATCGAATCCTTCTTTGTGCATGTCTGCTTTCATTCATTATGTTTTGTTCTGGATCTATAATTTGATTTGTTCTTACATTTTCTCGTAAATCAATTTAAGGTTCAGGCGTCGCAAATGTTCTCAATTATAGAAGAATAGACATTTTCATCGATGTGAAATTTGGTGGTTGTCTTTTATGAATTGTGGTAAAAGTTCGTAATGTCTTTGGTTAGATCCTCAAGGCTATTATGAACTGGAATCAGGCGTAGCTCTCCTAGCTGCATCAATCAATTCTGTTTTTTTTTTTTTTTTTTTAAATGTAAATACCCCAAAACGATTTACCGGGTCGTTTTATTTTGATGATTGCTGCATTGGCTGTCTTAATAGTTGATCAGCCATGATATTCATTGTCATTCCAGCCTAGATCTTGTTTCACATTAAAATTCTGTTCATTACATCCGCTATAGTGGCCATGCAACGGGAAGATATAAACTGCTTTTGAGTCAATTTTTGTCAAAAATTTACCCTTTGGTGTACATTGATGGGTGGAGGGTTGTGTATGTGATAAGTGCTAACTGAATTTTAGAAATTTCTAAACCAAAGTTGAACATGTATCTATTTGACCTATGTGAAGCAAATACTGAGAAGGTTGGAAGAGGATTCATGACGCATGAGATGTTCTTTTGACATGTTTCCTTGCTTCTTTTTAAGATAATTAAGAGGGTTTATTAGGAACATTGAAAGGGAGGAGTTGTCTGACTTATACATCTTTTTCTTTTTTATTTATTGATTAGATTTACTATTCCCTATCCTGTTACTTTCTTTGGCCTTTGCTTTGTATTGTCCATGAAACAGATTCCCGTGCAAATTTATCTTTTCAACTTTATAAATTATATATATATATATATATGTATGTATATCTTATTTCTTCATTTTTTTCGTTGCTTAGAGTTTCTGTAGTTTCTTTATCTTATGTTATCTCTAACTAAAGAAGGGAATCCTTTTCATTTTTCTCCCTTAACCCAACTTTTGTATATTTTTATTTCTAAATTGCCTGGGTTCTAATTTTTCTCCTCTTTTTTGTATTTTCACTTGTAATGATTACAGGACCGCATATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATATGTTTGATATTGTGAGTGGTGAGACCTCCAACTCATGGGAAAGACTTGATGCGTAAGTGATTCCTTTTGTAATGTATTATTTCCTATATGCTATGGTTCCCTCCATTGGGTTTTTGTGCTTCTAACACGAATCTGCTGTTTGACAGTGGTGGCCATGTGTCTCATTCATTTGAATTGGAAGCAAAATCAAAAGGAATGTTTCATGGTTCACCTGCTGTTATCACATTCCGTGTCCCTACGAAGTCTGCTTTACAGGTCAAATGCAAATATCCTTTCAATTACGATTATATTCTGGTTTACATAAGGTTGCAGACGTTTTACCATTCATCTTGATATCTGTAGGAGGCCTTATCAACCCCAATTCTACCTCTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTAAGTTTATCTCTATCCCTAGAATGAGTTTTCCATTTCAAGCTTAGTGATTTAAAGTCTTGTCAACTTGGTTAACTGGAGCAATCTTTTTGCCTTGGCATGGAATTTATCTCTCTGGGGGCGTTATTTCAACAGGTTAAGGTATGATTCATTCCATTCTCTCAATTCTTCCATAAAACTCTTCAAGTTAATAAGCAAACAGAAGCATTTCTTTGTTGACTGACCATTTATTCACACGACTGTTGTTTTCCTCCCTGCAGAGACTGCTCGCAAAGTACGGCTCTCTGATCTCAGTGGTCTCCATCATCGTTCTCTTCATCTGTCTTGTGGCTAGCCCATCAAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

mRNA sequence

ATGGCCCCTCCTATGATCCATCTTCTCTTCGCTTTTCTCTTCCTCTCCTCAACCATCGCAACCTCCGATGTTCCATTCATTGTCGCCCACAAGAAGGCCTCCCTCACCCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATATGTTTGATATTGTGAGTGGTGAGACCTCCAACTCATGGGAAAGACTTGATGCTGGTGGCCATGTGTCTCATTCATTTGAATTGGAAGCAAAATCAAAAGGAATGTTTCATGGTTCACCTGCTGTTATCACATTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTCTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTTAAGAGACTGCTCGCAAAGTACGGCTCTCTGATCTCAGTGGTCTCCATCATCGTTCTCTTCATCTGTCTTGTGGCTAGCCCATCAAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

Coding sequence (CDS)

ATGGCCCCTCCTATGATCCATCTTCTCTTCGCTTTTCTCTTCCTCTCCTCAACCATCGCAACCTCCGATGTTCCATTCATTGTCGCCCACAAGAAGGCCTCCCTCACCCGCCTCAAATCCGGCGCCGAACGCGTCTCTGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAATGATGCAAGCTGGCCAGGAGATATGTTTGATATTGTGAGTGGTGAGACCTCCAACTCATGGGAAAGACTTGATGCTGGTGGCCATGTGTCTCATTCATTTGAATTGGAAGCAAAATCAAAAGGAATGTTTCATGGTTCACCTGCTGTTATCACATTCCGTGTCCCTACGAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTCTGGATGTCCTCGCTGACAGGCCACCAGAGAAGAAGTTTGAGTGGGTTAAGAGACTGCTCGCAAAGTACGGCTCTCTGATCTCAGTGGTCTCCATCATCGTTCTCTTCATCTGTCTTGTGGCTAGCCCATCAAAATCTGCTGCAAAAGGAAGCAAGAAGAAGCGTTAA

Protein sequence

MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSAAKGSKKKR*

Homology

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BLAST of Chy6G120000 vs. ExPASy Swiss-Prot
Match: P43308 (Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 32  KASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETSNSWERLDAG 91
           K+ L R       +++  +IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 92  GHVSHSFELEAKSKGMFHGSPAVITF 118
            +VSH+  L     G F+ + A IT+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Chy6G120000 vs. ExPASy Swiss-Prot
Match: Q9CPW5 (Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 32  KASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETSNSWERLDAG 91
           K+ L R       +++  +IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 92  GHVSHSFELEAKSKGMFHGSPAVITF 118
            +VSH+  L     G F+ + A IT+
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATITY 112

[Close]

BLAST of Chy6G120000 vs. ExPASy Swiss-Prot
Match: Q5E9E4 (Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 8   LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDA 67
           L FA L L +     +   ++A  K+ L R       +++  +IYN GSS A DV L+D 
Sbjct: 4   LAFAVLALFAVTQAEEGARLLA-SKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDD 63

Query: 68  SWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTKSALQE 127
           S+P + F IVSG  +  W+R+    +VSH+  L     G F+ + A +T+       +  
Sbjct: 64  SFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVI 123

Query: 128 ALSTPILPLDVLADRPPEKKF 149
             ++      +LA R  +++F
Sbjct: 124 GFTSAPGQGGILAQREFDRRF 143

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BLAST of Chy6G120000 vs. ExPASy Swiss-Prot
Match: P23438 (Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=SSR2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 44/157 (28.03%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 32  KASLTRLKSGAERVSVSIDIYNQGSSTAYDVSLNDASWPGDMFDIVSGETSNSWERLDAG 91
           K+ L R       +++  +IYN GSS A DV L+D S+P + F IVSG  +  W+R+   
Sbjct: 27  KSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPA 86

Query: 92  GHVSHSFELEAKSKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFEWV 151
            +VSH+  L     G F+ + A +T+       +    ++      +LA R  +++F   
Sbjct: 87  SNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPVVIGFTSAPGQGGILAQREFDRRFSPH 146

Query: 152 KRLLAKYGSLISVVSIIVLFICLVASPSKSAAKGSKK 189
               A +G ++++ SI +  +   +S  K     SKK
Sbjct: 147 FLDWAAFG-VMTLPSIGIPLLLWYSSKRKYDTPKSKK 182

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BLAST of Chy6G120000 vs. ExPASy TrEMBL
Match: A0A0A0LBA3 (Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G597330 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60
           MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY
Sbjct: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60

Query: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVP 120
           DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKS+GMFHGSPAVITFRVP
Sbjct: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVP 120

Query: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSK 180
           TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFI LVASPSK
Sbjct: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSK 180

Query: 181 SAAKGSKKKR 191
           SAAKGSKKKR
Sbjct: 181 SAAKGSKKKR 190

[Close]

BLAST of Chy6G120000 vs. ExPASy TrEMBL
Match: A0A1S3BNZ1 (Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC103491721 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 182/188 (96.81%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 3   PPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 62
           PP+I LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV
Sbjct: 7   PPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 66

Query: 63  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTK 122
           SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAV+TFRVPTK
Sbjct: 67  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTK 126

Query: 123 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSA 182
           SALQEALSTPILPLDVLADRPPEKKFEWVKRLL KYGSLISV+SIIVLFI LVASPSKSA
Sbjct: 127 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVASPSKSA 186

Query: 183 AKGSKKKR 191
           AKGSKKKR
Sbjct: 187 AKGSKKKR 194

[Close]

BLAST of Chy6G120000 vs. ExPASy TrEMBL
Match: A0A5D3DTY4 (Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G001090 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 182/188 (96.81%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 3   PPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 62
           PP+I LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV
Sbjct: 7   PPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 66

Query: 63  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTK 122
           SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAV+TFRVPTK
Sbjct: 67  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTK 126

Query: 123 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSA 182
           SALQEALSTPILPLDVLADRPPEKKFEWVKRLL KYGSLISV+SIIVLFI LVASPSKSA
Sbjct: 127 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVASPSKSA 186

Query: 183 AKGSKKKR 191
           AKGSKKKR
Sbjct: 187 AKGSKKKR 194

[Close]

BLAST of Chy6G120000 vs. ExPASy TrEMBL
Match: A0A6J1FAK9 (Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111442301 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.2e-88
Identity = 170/186 (91.40%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64
           +IHLL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 9   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

Query: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTKSA 124
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVITFRVPTKSA
Sbjct: 69  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 128

Query: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSAAK 184
           LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF+ LVASPSKSAAK
Sbjct: 129 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 188

Query: 185 GSKKKR 191
           GSKKKR
Sbjct: 189 GSKKKR 194

[Close]

BLAST of Chy6G120000 vs. ExPASy TrEMBL
Match: A0A6J1DQQ5 (Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC111023364 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.2e-87
Identity = 172/187 (91.98%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 4   PMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVS 63
           P+I LLFA LF++STIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVS
Sbjct: 8   PLIRLLFALLFVASTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVS 67

Query: 64  LNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTKS 123
           LNDASWP D+FDI+SGETS SWERLDAG H+SHSFELEAK+KGMFHGSPAVITFRVPTKS
Sbjct: 68  LNDASWPVDVFDIISGETSKSWERLDAGAHLSHSFELEAKTKGMFHGSPAVITFRVPTKS 127

Query: 124 ALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSAA 183
           ALQEA STPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSI+VLFI LVASPSKSAA
Sbjct: 128 ALQEAYSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIVVLFIYLVASPSKSAA 187

Query: 184 KGSKKKR 191
           KGSKKKR
Sbjct: 188 KGSKKKR 194

[Close]

BLAST of Chy6G120000 vs. NCBI nr
Match: XP_004145695.1 (translocon-associated protein subunit beta [Cucumis sativus] >KGN58234.1 hypothetical protein Csa_017549 [Cucumis sativus])

HSP 1 Score: 362 bits (928), Expect = 1.11e-125
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60
           MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY
Sbjct: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60

Query: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVP 120
           DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKS+GMFHGSPAVITFRVP
Sbjct: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSRGMFHGSPAVITFRVP 120

Query: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSK 180
           TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFI LVASPSK
Sbjct: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFIYLVASPSK 180

Query: 181 SAAKGSKKKR 190
           SAAKGSKKKR
Sbjct: 181 SAAKGSKKKR 190

[Close]

BLAST of Chy6G120000 vs. NCBI nr
Match: XP_008450004.1 (PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_008450005.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_016900804.1 PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >KAA0037850.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa] >TYK27227.1 translocon-associated protein subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 353 bits (906), Expect = 2.89e-122
Identity = 182/188 (96.81%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 3   PPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 62
           PP+I LLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV
Sbjct: 7   PPLIRLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 66

Query: 63  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTK 122
           SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAV+TFRVPTK
Sbjct: 67  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVVTFRVPTK 126

Query: 123 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSA 182
           SALQEALSTPILPLDVLADRPPEKKFEWVKRLL KYGSLISV+SIIVLFI LVASPSKSA
Sbjct: 127 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLTKYGSLISVISIIVLFIYLVASPSKSA 186

Query: 183 AKGSKKKR 190
           AKGSKKKR
Sbjct: 187 AKGSKKKR 194

[Close]

BLAST of Chy6G120000 vs. NCBI nr
Match: XP_038894726.1 (translocon-associated protein subunit beta [Benincasa hispida])

HSP 1 Score: 335 bits (859), Expect = 4.22e-115
Identity = 169/188 (89.89%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 3   PPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDV 62
           PP+IHLL A LF+SSTIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYN+GSSTAYD 
Sbjct: 7   PPLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNRGSSTAYDA 66

Query: 63  SLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTK 122
           SLNDASWP DMFDIVSGETS SWERLDAGGH+SHSFELEAK+KG+FHGSPA+ITFRVPTK
Sbjct: 67  SLNDASWPEDMFDIVSGETSKSWERLDAGGHISHSFELEAKTKGLFHGSPAIITFRVPTK 126

Query: 123 SALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSA 182
           SALQEALSTPILPLD+LAD+PPEKK EWVKRLLAKYGSLISV+SI+VLFI LVASPSKSA
Sbjct: 127 SALQEALSTPILPLDILADKPPEKKLEWVKRLLAKYGSLISVISIVVLFIYLVASPSKSA 186

Query: 183 AKGSKKKR 190
           AKGSKKKR
Sbjct: 187 AKGSKKKR 194

[Close]

BLAST of Chy6G120000 vs. NCBI nr
Match: XP_023528715.1 (translocon-associated protein subunit beta [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334 bits (857), Expect = 7.15e-115
Identity = 170/186 (91.40%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64
           +IHLL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 4   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 63

Query: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTKSA 124
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVITFRVPTKSA
Sbjct: 64  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 123

Query: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSAAK 184
           LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF+ LVASPSKSAAK
Sbjct: 124 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 183

Query: 185 GSKKKR 190
           GSKKKR
Sbjct: 184 GSKKKR 189

[Close]

BLAST of Chy6G120000 vs. NCBI nr
Match: XP_022935419.1 (translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_022935420.1 translocon-associated protein subunit beta isoform X2 [Cucurbita moschata])

HSP 1 Score: 334 bits (857), Expect = 8.52e-115
Identity = 170/186 (91.40%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 5   MIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAYDVSL 64
           +IHLL AFLF+SSTIA+SDVPFIVAHKKA+LTRLKSG ERVSVSI+IYNQGSSTAYDV+L
Sbjct: 9   LIHLLLAFLFVSSTIASSDVPFIVAHKKATLTRLKSGVERVSVSIEIYNQGSSTAYDVTL 68

Query: 65  NDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVPTKSA 124
           NDASWPGD+FDIVSGETS SWERLDAGGH+SHSFELEAK+KGMFHGSPAVITFRVPTKSA
Sbjct: 69  NDASWPGDVFDIVSGETSKSWERLDAGGHLSHSFELEAKTKGMFHGSPAVITFRVPTKSA 128

Query: 125 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSKSAAK 184
           LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVS +VLF+ LVASPSKSAAK
Sbjct: 129 LQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSFVVLFVYLVASPSKSAAK 188

Query: 185 GSKKKR 190
           GSKKKR
Sbjct: 189 GSKKKR 194

[Close]

BLAST of Chy6G120000 vs. TAIR 10
Match: AT5G14030.1 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 121/190 (63.68%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60
           +A  +I  +  F+ +S++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGSS+AY
Sbjct: 5   VAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAY 64

Query: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVP 120
           DV+L D SW    F++V+G TS SWERLDAGG +SHS ELEAK KG+F+G+PAV+TFR+P
Sbjct: 65  DVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIP 124

Query: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSK 180
           TK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI LVA+P  
Sbjct: 125 TKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVATPKS 184

Query: 181 SAAKGSKKKR 191
           + +K S KK+
Sbjct: 185 NVSKASSKKK 194

[Close]

BLAST of Chy6G120000 vs. TAIR 10
Match: AT5G14030.2 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 121/190 (63.68%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60
           +A  +I  +  F+ +S++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGSS+AY
Sbjct: 5   VAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAY 64

Query: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVP 120
           DV+L D SW    F++V+G TS SWERLDAGG +SHS ELEAK KG+F+G+PAV+TFR+P
Sbjct: 65  DVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIP 124

Query: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSK 180
           TK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI LVA+P  
Sbjct: 125 TKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVATPKS 184

Query: 181 SAAKGSKKKR 191
           + +K S KK+
Sbjct: 185 NVSKASSKKK 194

[Close]

BLAST of Chy6G120000 vs. TAIR 10
Match: AT5G14030.3 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 121/190 (63.68%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60
           +A  +I  +  F+ +S++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGSS+AY
Sbjct: 5   VAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAY 64

Query: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVP 120
           DV+L D SW    F++V+G TS SWERLDAGG +SHS ELEAK KG+F+G+PAV+TFR+P
Sbjct: 65  DVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIP 124

Query: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSK 180
           TK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI LVA+P  
Sbjct: 125 TKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVATPKS 184

Query: 181 SAAKGSKKKR 191
           + +K S KK+
Sbjct: 185 NVSKASSKKK 194

[Close]

BLAST of Chy6G120000 vs. TAIR 10
Match: AT5G14030.4 (translocon-associated protein beta (TRAPB) family protein )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 121/190 (63.68%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 1   MAPPMIHLLFAFLFLSSTIATSDVPFIVAHKKASLTRLKSGAERVSVSIDIYNQGSSTAY 60
           +A  +I  +  F+ +S++ ATS+VPF+V HKKA+L RLKSGAERVSVS DIYNQGSS+AY
Sbjct: 5   VAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSSAY 64

Query: 61  DVSLNDASWPGDMFDIVSGETSNSWERLDAGGHVSHSFELEAKSKGMFHGSPAVITFRVP 120
           DV+L D SW    F++V+G TS SWERLDAGG +SHS ELEAK KG+F+G+PAV+TFR+P
Sbjct: 65  DVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFRIP 124

Query: 121 TKSALQEALSTPILPLDVLADRPPEKKFEWVKRLLAKYGSLISVVSIIVLFICLVASPSK 180
           TK ALQEA STP+LPLD+LAD+PP K  +  KRLLAKYGSL+SV+S++V FI LVA+P  
Sbjct: 125 TKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVATPKS 184

Query: 181 SAAKGSKKKR 191
           + +K S KK+
Sbjct: 185 NVSKASSKKK 194

The following BLAST results are available for this feature:

BLAST of Chy6G120000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P43308	1.2e-07	37.21	Translocon-associated protein subunit beta OS=Homo sapiens OX=9606 GN=SSR2 PE=1 ...	[more]
Q9CPW5	1.2e-07	37.21	Translocon-associated protein subunit beta OS=Mus musculus OX=10090 GN=Ssr2 PE=1...	[more]
Q5E9E4	2.1e-07	29.08	Translocon-associated protein subunit beta OS=Bos taurus OX=9913 GN=SSR2 PE=2 SV...	[more]
P23438	4.6e-07	28.03	Translocon-associated protein subunit beta OS=Canis lupus familiaris OX=9615 GN=...	[more]

BLAST of Chy6G120000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBA3	3.2e-96	98.95	Translocon-associated protein subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G5...	[more]
A0A1S3BNZ1	1.2e-93	96.81	Translocon-associated protein subunit beta OS=Cucumis melo OX=3656 GN=LOC1034917...	[more]
A0A5D3DTY4	1.2e-93	96.81	Translocon-associated protein subunit beta OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1FAK9	7.2e-88	91.40	Translocon-associated protein subunit beta OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1DQQ5	1.2e-87	91.98	Translocon-associated protein subunit beta OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Chy6G120000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145695.1	1.11e-125	98.95	translocon-associated protein subunit beta [Cucumis sativus] >KGN58234.1 hypothe...	[more]
XP_008450004.1	2.89e-122	96.81	PREDICTED: translocon-associated protein subunit beta [Cucumis melo] >XP_0084500...	[more]
XP_038894726.1	4.22e-115	89.89	translocon-associated protein subunit beta [Benincasa hispida]	[more]
XP_023528715.1	7.15e-115	91.40	translocon-associated protein subunit beta [Cucurbita pepo subsp. pepo]	[more]
XP_022935419.1	8.52e-115	91.40	translocon-associated protein subunit beta isoform X1 [Cucurbita moschata] >XP_0...	[more]

BLAST of Chy6G120000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14030.1	1.9e-64	63.68	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.2	1.9e-64	63.68	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.3	1.9e-64	63.68	translocon-associated protein beta (TRAPB) family protein	[more]
AT5G14030.4	1.9e-64	63.68	translocon-associated protein beta (TRAPB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05753	TRAP_beta	coord: 12..186 e-value: 7.2E-52 score: 175.4
None	No IPR available	PANTHER	PTHR12861:SF7	TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT BETA-LIKE	coord: 5..189
None	No IPR available	PANTHER	PTHR12861	TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT	coord: 5..189
IPR008856	Translocon-associated protein subunit beta	PIRSF	PIRSF016400	TRAP-beta	coord: 1..190 e-value: 1.7E-58 score: 195.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G120000.1	Chy6G120000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005783	endoplasmic reticulum