CmaCh18G009750 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh18G009750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA repair REX1-B protein
Location	Cma_Chr18: 8245288 .. 8248027 (+)
RNA-Seq Expression	CmaCh18G009750
Synteny	CmaCh18G009750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGGTTGAAGACTGAAACTGAAGGGAAAACTCGCTTCGAGCAGACGCCCTAAAGAATGGAAGATTTTGATAAGAAGCTCTCTCTCGCTGAGCAAATGGAGGAAGACGGAAGAACCTCTGGCGATTCTAGCGGTTCCTCCAACACTCTCACTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCAGAAGCTTATGCCAGGCTTAAGAGGTATCATTGATTTGATTTTCGTTTGAAATCTCGATCATTATTTTGGATAATCGATGACGAATTGATGACTTGAGTAATGTGTATGCGTATTTCTGTTATAGTTCTTGTCCTAGAACGCGATGTCGATGCATTTTCTTTCCTGTTGATTCCATATGGATCGATCATTGGAAAATCTATCTCAAAGAATTTTTGTTAGATCTAAATTAACTTAATGACAAAGTTTCGAGCGTGTTGCTGCTACTTATTTAAACAAGGCGGATTGAATTTTGCAAGTCTTCATTATTCTGTTGACTCGCAGGGGTTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCGGTGAGATCACTGCAGAATTCAGTAATTGCTCCAAACAAGTTCGTTTTGCAATTTCATAGCATTTCAGTTAGGCGTAGTCTTCTTTGAGCTTCCTTTTGAGGTTTTACTTTTTGGACTATGGACTCTCTCTTGTTGTAGGTCATTGACATTGAGTCGAACTTCTGTAGTCCAGATCATGACAGGATCGAGTTAGCCAGCCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCATCTGGTATGCCACCTCCAAGAAATTCTCTAGAATGCTTTGGTTATATTTTTTAAGCACCTTTTCCTTCTCTGCACTGAATAGGTTTGACGAGTAGTATTATTCCAAACCTGAAAATATATGACGTGCTTCACAGAATTCCAATTGGTCAGTTAAACTTGTAATTATAAATTTTGTAGGATCAAACAGTATATGCTTTGGAAAATTGTAATTATAAATTTTGTAGGATCAATCAGTATTTGCTTTTGAAAATAAGTCTTAAGTTTTTATCACAATGAGACAAGCCTCAAGGCGTAATAATTAAAAGACTTTTGAAACATTGTTCAGATTAGAGACATGGTCTATGGATAAATCTGGATCATGTAAAGAATTCTTACCTTCTCTTGATTCTAGAAAATTAAAGAAAGATGGCCATTTGTTTCACATATTCCTTCTAGGACTGCTACTGGCTACTAATATGACAAGCAGACCGTAGATTTTTTTAGAGAGCCTTCCATGGTTGCTACATGTAAAGTCACAAGGTTGTAACGGCCCAAGCCCATTGTTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGTTTCCTCTCAAGGTTTTTAAAACACGTATGCTAGGGAGAGGTTTCCACACTCTTATAAAGAATATTTCGTTCTCCTCTCCAACCGGTGTGGGATCTGATAGTATTTCACTATTTGTGTCTTATTGTTGATTCCTTTAGATGTGGTGCACTTTGTCTTACAACAAGGCTACTCCACCTTTGAAATTCCTTCTCAAGTTGTCTTAAAAGCTGATTAAACATCGAATGAGTAGCAGGCAATAATGTGTAGAGTGATTTCCTTTCTTGGATTAACTTTTAGAAATGCAATTCATTGAAATAAACACCAAAGTCAGCTCCATGTAGTTCAGATTCTCTTCTCTCAACCACTGCCCTTACTCCATCTCCTAAACATTACATTATTCTGGCTAGAATTCCTTTTATGATAAATAAAAAAAAGGTCACTGGAAAATTGTCTATCAAAATAGAGTTGAAGGAAAACTGTAATGTCCTTGAAAGATCTTAAATAAACATCTCTCACATCTAAGTTTCCCTTTCATTCTTCTTTCACCATTAAACTACTGAGCTCGATGATGTAAGTATTCAATCACCTGCACAAGGTCCTCAAGTAGTGATACATAGCTTATCCTTCAATGCTTTACATAGTTGTTTCATGCCATTTCCAGTGCTAAAAAACAGTACCAGAAGTTTGCTGATCATCTATTAGTTAATTAATTTGAAAGCTGAGAATGCATACAAATAAGCAAACGATGAGATAAGACACATCACCGCGTGTTTGTGTTGCGGGTGGGTTTTCTTGGACATTGAATGTGTACTTTTGCTAGATAGGAACCTCATCGTATAAAGTTCAAGAGTTGAGAGTTCCTGCCTTCATCTTTTCCTAACAATTATTCCTCTTTATAGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCGGAGCGCTTGGTGAGCCACGAGAATTGCAGATTCAAGACACCTCGAGAGCACGAGTGTGTACATGTCCACGAGATAACTGAAGCTTCAGGTACCGAGGAAGCAGAAGCAGATGCCGAATATGACAATGCTCTCAAGGAAGCAATCAAAGGTGTGCAAGAGGCTGTGACGACCATTAATGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTTGTGACATATGTATATGTTAATTGGTAATATCTTGCTCTGCAATTGAATTGGTTATTGAAATGTGCCTGTAAAGATACACAGAGTTGGTTCTTTACTAACGTGCATTCGCTCAACGTAGGGATAAAGCAAAAAGTTTACATCTTCGTGTTTGCCATCTTTTACGAGATATATCAACTGAATTCTCAATTTTTTGCCCCAA

mRNA sequence

TTCAGGTTGAAGACTGAAACTGAAGGGAAAACTCGCTTCGAGCAGACGCCCTAAAGAATGGAAGATTTTGATAAGAAGCTCTCTCTCGCTGAGCAAATGGAGGAAGACGGAAGAACCTCTGGCGATTCTAGCGGTTCCTCCAACACTCTCACTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCAGAAGCTTATGCCAGGCTTAAGAGGGGTTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCGGTGAGATCACTGCAGAATTCAGTAATTGCTCCAAACAAGTCATTGACATTGAGTCGAACTTCTGTAGTCCAGATCATGACAGGATCGAGTTAGCCAGCCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCATCTGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCGGAGCGCTTGGTGAGCCACGAGAATTGCAGATTCAAGACACCTCGAGAGCACGAGTGTGTACATGTCCACGAGATAACTGAAGCTTCAGGTACCGAGGAAGCAGAAGCAGATGCCGAATATGACAATGCTCTCAAGGAAGCAATCAAAGGTGTGCAAGAGGCTGTGACGACCATTAATGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAATCTTGTGACATATGTATATGTTAATTGGTAATATCTTGCTCTGCAATTGAATTGGTTATTGAAATGTGCCTGTAAAGATACACAGAGTTGGTTCTTTACTAACGTGCATTCGCTCAACGTAGGGATAAAGCAAAAAGTTTACATCTTCGTGTTTGCCATCTTTTACGAGATATATCAACTGAATTCTCAATTTTTTGCCCCAA

Coding sequence (CDS)

ATGGAAGATTTTGATAAGAAGCTCTCTCTCGCTGAGCAAATGGAGGAAGACGGAAGAACCTCTGGCGATTCTAGCGGTTCCTCCAACACTCTCACTTTGCTCCGCAAGTTTCTTGAAATCCAGCAGCGTAGAGCAGAAGCTTATGCCAGGCTTAAGAGGGGTTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCGGTGAGATCACTGCAGAATTCAGTAATTGCTCCAAACAAGTCATTGACATTGAGTCGAACTTCTGTAGTCCAGATCATGACAGGATCGAGTTAGCCAGCCTGCTTAGATCTGTTCAAGAACAAGAAAAGCAGAAATTGCATCTGACAGCTCAAATTCAGTTATTGAAGAAGGCTGGTCGCCCATCGGAGCGCTTGGTGAGCCACGAGAATTGCAGATTCAAGACACCTCGAGAGCACGAGTGTGTACATGTCCACGAGATAACTGAAGCTTCAGGTACCGAGGAAGCAGAAGCAGATGCCGAATATGACAATGCTCTCAAGGAAGCAATCAAAGGTGTGCAAGAGGCTGTGACGACCATTAATGAGCACATGGAGGAAGTGAGATATGAGATTGCAGCTCTTGAAGATAAGTAA

Protein sequence

MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEAIKGVQEAVTTINEHMEEVRYEIAALEDK

Homology

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BLAST of CmaCh18G009750 vs. ExPASy Swiss-Prot
Match: Q9CYZ6 (Required for excision 1-B domain-containing protein OS=Mus musculus OX=10090 GN=Rex1bd PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.3e-06
Identity = 35/120 (29.17%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 17  DGRTSGDSSGS---SNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMTSGREI---SYQQL 76
           DG  S +S+ +   +   TL+++  ++Q  RA+A+ RL +   +Y+ SG+     SY+ +
Sbjct: 13  DGPGSAESAWAWRDAPIATLVQRIQQLQNERAQAFRRLDQAHRQYLLSGQHYDFPSYRSV 72

Query: 77  CGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLLKKAG 131
             E+T  F+  S++V+ +E+    P    + LA  +RS+QE E+ +L   A +Q++   G
Sbjct: 73  VHEVTQAFAAASREVLAVEAELAGPRAQPV-LARHVRSLQELEQTRLATVALLQVMGTPG 131

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BLAST of CmaCh18G009750 vs. ExPASy Swiss-Prot
Match: Q17Q97 (Required for excision 1-B domain-containing protein OS=Bos taurus OX=9913 GN=REX1BD PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05
Identity = 30/97 (30.93%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 33  LLRKFLEIQQRRAEAYARLKRGFDEYMTSGREIS---YQQLCGEITAEFSNCSKQVIDIE 92
           L+++  ++Q  RA+A+ RL+ G  +Y++SG       Y+    E+T  F+  S++V+ +E
Sbjct: 42  LVQRIHQLQAERAQAFRRLEEGHRQYLSSGPPYDFPRYRSTVHEVTQVFAAASREVLAVE 101

Query: 93  SNFCSPDHDRIELASLLRSVQEQEKQKLHLTAQIQLL 127
           +    P    + LAS +RS+Q+ E+ +L   A +QL+
Sbjct: 102 AELAGPRAQPL-LASHVRSLQQLEETRLTTVALLQLM 137

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BLAST of CmaCh18G009750 vs. ExPASy TrEMBL
Match: A0A6J1HYI6 (uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467775 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.0e-108
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQEAVTTINEHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of CmaCh18G009750 vs. ExPASy TrEMBL
Match: A0A6J1G147 (uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449729 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.0e-108
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQEAVTTINEHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

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BLAST of CmaCh18G009750 vs. ExPASy TrEMBL
Match: A0A0A0KUN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.0e-91
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFEKKLSLDEQMEEDRKTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+ELA+ LRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQ+AVTTINEHMEEVRYEI ALEDK
Sbjct: 181 IKGVQDAVTTINEHMEEVRYEIEALEDK 203

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BLAST of CmaCh18G009750 vs. ExPASy TrEMBL
Match: A0A5D3CFT2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001610 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.9e-90
Identity = 180/208 (86.54%), Postives = 191/208 (91.83%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDF+KKLSL EQMEED  T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFEKKLSLDEQMEEDRGTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF + DH+R+ELA+LLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCR   PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQ+AVTTIN+HMEEVRYEI ALEDK
Sbjct: 181 IKGVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of CmaCh18G009750 vs. ExPASy TrEMBL
Match: A0A1S3BGI9 (uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.9e-90
Identity = 180/208 (86.54%), Postives = 191/208 (91.83%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDF+KKLSL EQMEED  T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFEKKLSLDEQMEEDRGTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF + DH+R+ELA+LLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRNSDHNRLELANLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCR   PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRINAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQ+AVTTIN+HMEEVRYEI ALEDK
Sbjct: 181 IKGVQDAVTTINDHMEEVRYEIEALEDK 203

[Close]

BLAST of CmaCh18G009750 vs. NCBI nr
Match: XP_022945518.1 (uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 uncharacterized protein C19orf60 homolog [Cucurbita maxima] >KAG6573912.1 Required for excision 1-B domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400.6 bits (1028), Expect = 8.3e-108
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQEAVTTINEHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of CmaCh18G009750 vs. NCBI nr
Match: KAG7012978.1 (hypothetical protein SDJN02_25732 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.1 bits (1024), Expect = 2.4e-107
Identity = 207/208 (99.52%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRFKTP+EHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPQEHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQEAVTTINEHMEEVRYEIAALEDK
Sbjct: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of CmaCh18G009750 vs. NCBI nr
Match: XP_023541138.1 (uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 4.1e-107
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT
Sbjct: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRFKTPREHEC+HVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECLHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQ+AVTTINEHMEEVRYEIAALEDK
Sbjct: 181 IKGVQDAVTTINEHMEEVRYEIAALEDK 208

[Close]

BLAST of CmaCh18G009750 vs. NCBI nr
Match: XP_004135056.1 (uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical protein Csa_009032 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 4.1e-91
Identity = 182/208 (87.50%), Postives = 192/208 (92.31%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDF+KKLSL EQMEED +T      SSNTL+LLR+FLEIQQRRAEAY++LKRGFDEYMT
Sbjct: 1   MEDFEKKLSLDEQMEEDRKTD-----SSNTLSLLRQFLEIQQRRAEAYSKLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLC EIT EFSNCSKQVIDIESNF S DH+R+ELA+ LRSVQEQEKQKLHLT
Sbjct: 61  SGREISYQQLCSEITTEFSNCSKQVIDIESNFRSSDHNRLELANQLRSVQEQEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSERLVSHENCRF  PREHECVHVHEITEASGTEEAEADAEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERLVSHENCRFNAPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQ+AVTTINEHMEEVRYEI ALEDK
Sbjct: 181 IKGVQDAVTTINEHMEEVRYEIEALEDK 203

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BLAST of CmaCh18G009750 vs. NCBI nr
Match: XP_038892275.1 (uncharacterized protein LOC120081463 [Benincasa hispida])

HSP 1 Score: 344.4 bits (882), Expect = 7.1e-91
Identity = 181/208 (87.02%), Postives = 195/208 (93.75%), Query Frame = 0


Query: 1   MEDFDKKLSLAEQMEEDGRTSGDSSGSSNTLTLLRKFLEIQQRRAEAYARLKRGFDEYMT 60
           MEDF+KKLSL EQMEED RT  D+S SSNTL+LLR+FLEIQQRRAEAYARLKRGFDEYMT
Sbjct: 1   MEDFEKKLSLDEQMEEDQRT--DASDSSNTLSLLREFLEIQQRRAEAYARLKRGFDEYMT 60

Query: 61  SGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSVQEQEKQKLHLT 120
           SGREISYQQLC +IT EFSNCSKQVIDIESNF S DH+R+ELA+LLRSVQE+EKQKLHLT
Sbjct: 61  SGREISYQQLCSQITTEFSNCSKQVIDIESNFRSSDHNRLELANLLRSVQEKEKQKLHLT 120

Query: 121 AQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEADAEYDNALKEA 180
           AQIQLLKKAGRPSER+VSHENCRF  PREHECVHVHE+T ASGTEEAEA+AEYDNALKEA
Sbjct: 121 AQIQLLKKAGRPSERVVSHENCRFNAPREHECVHVHEMTGASGTEEAEAEAEYDNALKEA 180

Query: 181 IKGVQEAVTTINEHMEEVRYEIAALEDK 209
           IKGVQ+ VTTINE+MEEVRYEIAALEDK
Sbjct: 181 IKGVQDTVTTINEYMEEVRYEIAALEDK 206

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BLAST of CmaCh18G009750 vs. TAIR 10
Match: AT5G04910.1 (unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 256.1 bits (653), Expect = 2.4e-68
Identity = 137/217 (63.13%), Postives = 166/217 (76.50%), Query Frame = 0


Query: 2   EDFDKKLSLAEQMEED----------GRTSG--DSSGSSNTLTLLRKFLEIQQRRAEAYA 61
           EDF KK+SL + +  D          G TS    S  +S TL LLR  LEIQQRRA+AYA
Sbjct: 4   EDFQKKVSLRDSLSGDIENECGGSGVGSTSSTVGSGVASQTLVLLRSLLEIQQRRAQAYA 63

Query: 62  RLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIESNFCSPDHDRIELASLLRSV 121
            LK GF EY+ SG E  YQ+LC EIT EFS CSKQV ++ES F +P+  R +LA LL  +
Sbjct: 64  NLKSGFSEYVESGAEALYQKLCSEITTEFSECSKQVREMESLFLNPEVGRADLAKLLSDI 123

Query: 122 QEQEKQKLHLTAQIQLLKKAGRPSERLVSHENCRFKTPREHECVHVHEITEASGTEEAEA 181
           Q QEKQKLHLT  IQ+LKKAGRPSER+++HENC+FK P +HECVH+HEITEA+GTEEAEA
Sbjct: 124 QTQEKQKLHLTVTIQVLKKAGRPSERMLTHENCKFKKPMQHECVHLHEITEAAGTEEAEA 183

Query: 182 DAEYDNALKEAIKGVQEAVTTINEHMEEVRYEIAALE 207
           DAE+DNALKEAI+GVQ+AVT+INE++E++RYEI ALE
Sbjct: 184 DAEFDNALKEAIRGVQDAVTSINEYLEDIRYEIEALE 220

The following BLAST results are available for this feature:

BLAST of CmaCh18G009750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CYZ6	7.3e-06	29.17	Required for excision 1-B domain-containing protein OS=Mus musculus OX=10090 GN=...	[more]
Q17Q97	2.1e-05	30.93	Required for excision 1-B domain-containing protein OS=Bos taurus OX=9913 GN=REX...	[more]

BLAST of CmaCh18G009750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYI6	4.0e-108	100.00	uncharacterized protein C19orf60 homolog OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G147	4.0e-108	100.00	uncharacterized protein C19orf60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A0A0KUN3	2.0e-91	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612270 PE=4 SV=1	[more]
A0A5D3CFT2	2.9e-90	86.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BGI9	2.9e-90	86.54	uncharacterized protein LOC103489347 OS=Cucumis melo OX=3656 GN=LOC103489347 PE=...	[more]

BLAST of CmaCh18G009750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945518.1	8.3e-108	100.00	uncharacterized protein C19orf60 homolog [Cucurbita moschata] >XP_022968603.1 un...	[more]
KAG7012978.1	2.4e-107	99.52	hypothetical protein SDJN02_25732 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023541138.1	4.1e-107	99.04	uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_004135056.1	4.1e-91	87.50	uncharacterized protein LOC101210078 [Cucumis sativus] >KGN52147.1 hypothetical ...	[more]
XP_038892275.1	7.1e-91	87.02	uncharacterized protein LOC120081463 [Benincasa hispida]	[more]

BLAST of CmaCh18G009750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04910.1	2.4e-68	63.13	unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
IPR039491	Required for excision 1-B domain-containing protein	PFAM	PF14966	DNA_repr_REX1B	coord: 33..127 e-value: 2.6E-33 score: 114.5
IPR039491	Required for excision 1-B domain-containing protein	PANTHER	PTHR28309	REQUIRED FOR EXCISION 1-B DOMAIN-CONTAINING PROTEIN	coord: 25..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G009750.1	CmaCh18G009750.1	mRNA