CmaCh14G012970 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G012970
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 10244893 .. 10245988 (-)
RNA-Seq ExpressionCmaCh14G012970
SyntenyCmaCh14G012970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCCGATGGACAATATGGGCTCTGTTACCTCTCCAAGTCAAAGCCCATATTCGACCTTCAACGCTTTGCTCATCGAATTTATGTACCGTCTTGCAAATCAGAAGCGCCATTGAAGACGAGCAGGAACTTGGAACTGAATTTCTGTACCTTCTTTTTCCGTCCTTCGCATCCACTAAGTAGATATCCTTCCAATTGGCTCTACAATCTGCGTGCTATCGAAGGTTGTTTTCATTTCCATTTTTATTGCCAGCATTCATATTATTTATTAATCAACGTTTTCTTTGTTTGAATTAATGTCTGTTTTCCGGCGAACTTTCTGCAATTTATGGTTTGCCCGTGATCAAGTGGTTTTTTGTTTTTTCGTGATCGTCTTATTGATTTTGGCTGGTTTAATTGGTTGATTTGTCCCCATTCGTTTGTATGATCGTAAAAATTGAAACTAGGGCTTCGGGTTATAATTGGATCTGATCTAGTTATTATAATGATGAATATTAGGTTCCTGAATTTCTCTTTCGGTTTGCTTAGGTGTGTTTCCACCTGTGAGGGGTTTGTTGATTAAATTTGTTATAGTTTAAGCCTGTGATTTAACATCCTTGTGTTTTAGTTTTATCGATGGATTACTTCAAAGAGTGAGGAGAGATTCTTGTTTACTATCGGAACTCACATTTTATGTTTGTTTTGTTCACAATTAGTTTGTCCTCACCGTTTATTAGTCAACCCTTAATTTAACTTCTATTTGTATTTAAATGGAACATGATGACAACAATTCCGAGGTATTCTTTAGTGGGAATTTTGCCTTCCGAAGAAACTAAGTTCTACATTTATCCTTGGACTTTCAAATAAAATTTCCTTCGGTACCTTGGTTGTGGCATGCTGAACACTTTCCTCAGAATTCAGAATAGTAAAGAAGTGATACCTGAACGCCCTCATTGGTGTTTTTTTTGTGTGGGAAAGTAGTGGAAAACTCTGAACACTTTTTCTTTAAGGGCCATTTTTCTAGCAGAATATGGTCGTTGATGTTTTGAATTTCTTATATTAGGTGGTCTAGCACTCAGAAACATCCTATCTTTTCTTTTGCAGCTCTTGATTAG

mRNA sequence

ATGTGGGCCGATGGACAATATGGGCTCTGTTACCTCTCCAAGTCAAAGCCCATATTCGACCTTCAACGCTTTGCTCATCGAATTTATGTACCGTCTTGCAAATCAGAAGCGCCATTGAAGACGAGCAGGAACTTGGAACTGAATTTCTGTACCTTCTTTTTCCGTCCTTCGCATCCACTAAGTAGATATCCTTCCAATTGGCTCTACAATCTGCGTGCTATCGAAGCTCTTGATTAG

Coding sequence (CDS)

ATGTGGGCCGATGGACAATATGGGCTCTGTTACCTCTCCAAGTCAAAGCCCATATTCGACCTTCAACGCTTTGCTCATCGAATTTATGTACCGTCTTGCAAATCAGAAGCGCCATTGAAGACGAGCAGGAACTTGGAACTGAATTTCTGTACCTTCTTTTTCCGTCCTTCGCATCCACTAAGTAGATATCCTTCCAATTGGCTCTACAATCTGCGTGCTATCGAAGCTCTTGATTAG

Protein sequence

MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPSCKSEAPLKTSRNLELNFCTFFFRPSHPLSRYPSNWLYNLRAIEALD
Homology
[Close]
BLAST of CmaCh14G012970 vs. NCBI nr
Match: KAG7018318.1 (Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 3.0e-34
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYV-PSCKSEAPLKTSRNLELNFCTFFFRPSHP 60
          MWADGQYGLCYLSKSKPIFDLQRFAHRIYV PS KSEAPLKTSRNLELNFCTFFFRPSHP
Sbjct: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP 60

Query: 61 LSRYPSNWLYNLRAIEALD 79
           SRYPSNWLYN RAIE ++
Sbjct: 61 PSRYPSNWLYNPRAIEGIN 79

[Close]
BLAST of CmaCh14G012970 vs. NCBI nr
Match: KAG6581883.1 (hypothetical protein SDJN03_21885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.8 bits (390), Expect = 3.0e-34
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYV-PSCKSEAPLKTSRNLELNFCTFFFRPSHP 60
          MWADGQYGLCYLSKSKPIFDLQRFAHRIYV PS KSEAPLKTSRNLELNFCTFFFRPSHP
Sbjct: 1  MWADGQYGLCYLSKSKPIFDLQRFAHRIYVPPSRKSEAPLKTSRNLELNFCTFFFRPSHP 60

Query: 61 LSRYPSNWLYNLRAIEALD 79
           SRYPSNWLYN RAIE ++
Sbjct: 61 PSRYPSNWLYNPRAIEGIN 79

The following BLAST results are available for this feature:
BLAST of CmaCh14G012970 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G012970 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G012970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018318.13.0e-3491.14Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. a... [more]
KAG6581883.13.0e-3491.14hypothetical protein SDJN03_21885, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh14G012970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G012970.1CmaCh14G012970.1mRNA