CmaCh06G004490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G004490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Phytosulfokine-beta
Location	Cma_Chr06: 2079969 .. 2080624 (-)
RNA-Seq Expression	CmaCh06G004490
Synteny	CmaCh06G004490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGACTTGAAAAAGGCAACATAGACACAATCCCTCTCTCTTTGCTAGCCTTCTTCTTCTTCATCATCAAAACACTAAAGAAAATGAACCAGAGCTCCCATGGCTTCTCCTCCTTCTTCTACTTCTTCATTTTCCTCCTCCTTTCCCAATCAGCCACTGCACGTTTCCTACCAACCAAACAAGGTAAACCCACTTCAAAAAACCCTTCCTTTTTCACTTCCACCTTCCATTTTCTCACCTTTTCCTTCTCTTTCCCGGAAAATTTGCAGGTTTTGAAGAAACCCACAACAAGCTCAGCCATGGAATGATCCAAGCAGATTCATGGCCAGATTTCCCCCAAGTAAGTACCCATCATCTCTTCTTTTAAGCTTTCTTCTTTGGATTTTAATGGCGGATTTCCCTTTCATTTGTAGATAATAAGAGAAGAAGAAGAAGAAGATGAAGAATGGGAGAAGAGAAGGATGATGTTAGAAGCACACTTGGATTATGTTTATACACAAAATGAGAAGCCTTGAATTATGTTTATACAATTTTCATTTTTTTTCCTTATCAACATATGTTTTATGCACATATATCCAAAAATATTACAACAAATGTTGATGTTTTCATCATTTCATAATTATATGAAGAATATAGTATTGTTTACAAGGACTTGT

mRNA sequence

TGTGACTTGAAAAAGGCAACATAGACACAATCCCTCTCTCTTTGCTAGCCTTCTTCTTCTTCATCATCAAAACACTAAAGAAAATGAACCAGAGCTCCCATGGCTTCTCCTCCTTCTTCTACTTCTTCATTTTCCTCCTCCTTTCCCAATCAGCCACTGCACGTTTCCTACCAACCAAACAAGGTTTTGAAGAAACCCACAACAAGCTCAGCCATGGAATGATCCAAGCAGATTCATGGCCAGATTTCCCCCAAATAATAAGAGAAGAAGAAGAAGAAGATGAAGAATGGGAGAAGAGAAGGATGATGTTAGAAGCACACTTGGATTATGTTTATACACAAAATGAGAAGCCTTGAATTATGTTTATACAATTTTCATTTTTTTTCCTTATCAACATATGTTTTATGCACATATATCCAAAAATATTACAACAAATGTTGATGTTTTCATCATTTCATAATTATATGAAGAATATAGTATTGTTTACAAGGACTTGT

Coding sequence (CDS)

ATGAACCAGAGCTCCCATGGCTTCTCCTCCTTCTTCTACTTCTTCATTTTCCTCCTCCTTTCCCAATCAGCCACTGCACGTTTCCTACCAACCAAACAAGGTTTTGAAGAAACCCACAACAAGCTCAGCCATGGAATGATCCAAGCAGATTCATGGCCAGATTTCCCCCAAATAATAAGAGAAGAAGAAGAAGAAGATGAAGAATGGGAGAAGAGAAGGATGATGTTAGAAGCACACTTGGATTATGTTTATACACAAAATGAGAAGCCTTGA

Protein sequence

MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIREEEEEDEEWEKRRMMLEAHLDYVYTQNEKP

Homology

[Close]

BLAST of CmaCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1KTY7 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60
          MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR
Sbjct: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60

Query: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
          EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP
Sbjct: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 90

[Close]

BLAST of CmaCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1FSF0 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447730 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.8e-36
Identity = 82/90 (91.11%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60
          MNQSSHG      FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQ DSWPDFPQIIR
Sbjct: 1  MNQSSHGL-----FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQIIR 60

Query: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
           EEEEDEEWEKRRMMLEAHLDYVYTQNEKP
Sbjct: 61 -EEEEDEEWEKRRMMLEAHLDYVYTQNEKP 84

[Close]

BLAST of CmaCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1F9T2 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.3e-26
Identity = 69/95 (72.63%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYF---FIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQ 60
          MNQSSHGF  FF+F   FIFLL SQSA+ARF   KQG  ETH KL+HG +QADSWPDFP 
Sbjct: 1  MNQSSHGFFFFFFFSFLFIFLLFSQSASARFPAAKQGLGETHEKLTHGGVQADSWPDFPH 60

Query: 61 II--REE-EEEDEEWEKRRMMLEAHLDYVYTQNEK 90
          II  RE+ EEE+E WEKR+MMLEAHLDYVYTQN K
Sbjct: 61 IIGGREKGEEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CmaCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1IYI6 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MNQSSHGFSSFF--YFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQI 60
          MNQSSHGF  FF  + FIFLL SQS +ARF   KQG  ETH KL+HG++QADSW DFP I
Sbjct: 1  MNQSSHGFFFFFFSFLFIFLLFSQSTSARFPAAKQGLGETHEKLTHGVVQADSWADFPHI 60

Query: 61 I----REEEEEDEEWEKRRMMLEAHLDYVYTQNEK 90
          I    + EEEE+E WEKR+MMLEAHLDYVYTQN K
Sbjct: 61 IGGREKGEEEEEEGWEKRKMMLEAHLDYVYTQNVK 95

[Close]

BLAST of CmaCh06G004490 vs. ExPASy TrEMBL
Match: A0A1S4DUI1 (Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 2   NQSSHGFSSFFYFFIF---------LLLSQSATARFLPTKQGFEETHNKLSHG-MIQA-D 61
           N++SHGF  FF+FF F         L  S SA+ARF P+K G EETH K+S+G M+Q+ D
Sbjct: 81  NRNSHGFFFFFFFFFFFISFLFILLLFSSHSASARFPPSKHGIEETHKKISYGSMVQSGD 140

Query: 62  SWPDFPQIIR---EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
           SWPDFP + R   EEE E+EE EKR+MMLEAHLDYVYTQ+E P
Sbjct: 141 SWPDFPHVKREKDEEEVEEEEGEKRKMMLEAHLDYVYTQHENP 183

[Close]

BLAST of CmaCh06G004490 vs. NCBI nr
Match: XP_023005727.1 (putative phytosulfokines 6 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60
          MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR
Sbjct: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60

Query: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
          EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP
Sbjct: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 90

[Close]

BLAST of CmaCh06G004490 vs. NCBI nr
Match: XP_022942814.1 (putative phytosulfokines 6 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35
Identity = 82/90 (91.11%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60
          MNQSSHG      FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQ DSWPDFPQIIR
Sbjct: 1  MNQSSHGL-----FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQIIR 60

Query: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
           EEEEDEEWEKRRMMLEAHLDYVYTQNEKP
Sbjct: 61 -EEEEDEEWEKRRMMLEAHLDYVYTQNEKP 84

[Close]

BLAST of CmaCh06G004490 vs. NCBI nr
Match: KAG6596546.1 (hypothetical protein SDJN03_09726, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 79/90 (87.78%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60
          MNQSSHGF     FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQ DSWPDFPQ IR
Sbjct: 1  MNQSSHGF-----FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQTIR 60

Query: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
             EEDEEWEK RMMLEAHLDYVYTQNEKP
Sbjct: 61 ---EEDEEWEKTRMMLEAHLDYVYTQNEKP 82

[Close]

BLAST of CmaCh06G004490 vs. NCBI nr
Match: KAG7028081.1 (hypothetical protein SDJN02_09261 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 77/90 (85.56%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MNQSSHGFSSFFYFFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFPQIIR 60
          MNQSSHG      FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQ DSWPDFPQ IR
Sbjct: 1  MNQSSHGL-----FFIFLLLSQSATARFLPTKQGFEETHNKLSHGMIQPDSWPDFPQTIR 60

Query: 61 EEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
             EEDEEWEK RMMLEAHLDYVYTQN+KP
Sbjct: 61 ---EEDEEWEKTRMMLEAHLDYVYTQNKKP 82

[Close]

BLAST of CmaCh06G004490 vs. NCBI nr
Match: XP_038906014.1 (uncharacterized protein LOC120091917 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-26
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MNQSSHGFSSFF---YFFIFLLL-SQSATARFLPTKQGFEETHNKLSHGMIQADSWPDFP 60
           MNQ+SHGF  FF   + FIFLL  S SA+ARF  +KQG EETH K+SHGM+QADSWPDFP
Sbjct: 1   MNQNSHGFFFFFFLSFLFIFLLFSSHSASARFPSSKQGIEETHKKISHGMVQADSWPDFP 60

Query: 61  QII-------------REEEEEDEEWEKRRMMLEAHLDYVYTQNEKP 91
            I+              EEEEE+EEWEK +MMLEAHLDYVYTQNEKP
Sbjct: 61  HIMGGREKGGGGGGGGEEEEEEEEEWEKGKMMLEAHLDYVYTQNEKP 107

The following BLAST results are available for this feature:

BLAST of CmaCh06G004490 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G004490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTY7	1.5e-43	100.00	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111498637 PE=3 SV=1	[more]
A0A6J1FSF0	8.8e-36	91.11	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447730 PE=3 SV=1	[more]
A0A6J1F9T2	6.3e-26	72.63	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111442110 PE=3 SV=1	[more]
A0A6J1IYI6	7.0e-25	68.42	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111481800 PE=3 SV=1	[more]
A0A1S4DUI1	1.8e-20	59.22	Phytosulfokine-beta OS=Cucumis melo OX=3656 GN=LOC107990603 PE=3 SV=1	[more]

BLAST of CmaCh06G004490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005727.1	3.1e-43	100.00	putative phytosulfokines 6 [Cucurbita maxima]	[more]
XP_022942814.1	1.8e-35	91.11	putative phytosulfokines 6 [Cucurbita moschata]	[more]
KAG6596546.1	1.0e-33	87.78	hypothetical protein SDJN03_09726, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028081.1	1.4e-32	85.56	hypothetical protein SDJN02_09261 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038906014.1	5.9e-26	64.49	uncharacterized protein LOC120091917 [Benincasa hispida]	[more]

BLAST of CmaCh06G004490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..79
None	No IPR available	PANTHER	PTHR33285:SF33	PHYTOSULFOKINES 6-RELATED	coord: 3..90
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 15..89 e-value: 5.9E-11 score: 43.2
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G004490.1	CmaCh06G004490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0008083	growth factor activity