CmaCh01G013960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh01G013960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr01: 9884123 .. 9886541 (+)
RNA-Seq Expression	CmaCh01G013960
Synteny	CmaCh01G013960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTTCCAATTCACCACACTTCGTCTCTTAGAAACTGCGATTTTTCTCTTAGGTCATATCTTCTGTTATTGTTTCGAGTTCGCTAAGATTAACTCCGAACTTGTTCATTATTGTTTTTTGTAACCGCGATTCGTCGTTTACCACCTCGAAATCTCCGTCGACCGTTGCAGCCGGCGTCGGAGTCAGTGTCGTATTCTGAACCGGAGGAATGACGCAGTCGCCGGATTTCGGAGGCGATTACACCGACGGAACTCACCACGTACAGTCCTTTTCGTCGACCTCTCTCTACTCTTCTTCGTCTCGCCGAGATGTTTATTACAGGTTCAATTTAATCTCTGGCTTATATCGCTTACTGTATAGTTATTTAGTTTTACAAATATCTGTTTCTTCTCTACTGGTCTCTGAATTACTTTTTTTTTGTTCTGATCGGAGGGGTGAGTGAAATTCCCCGATTTCTTGGTTTTTACCTTAATTTAATCGATTTCGAACTGATTGGTATTTCGGAAGTTGTGATAGCTCTTTGATACGATATGATCCGACTGATTTGGGTGTAAAATTTATTGAATTAGGTTCCATAGGATAGTAGTCGAGGGGAATTCGAAAGATTTAAGGAAACAGTGAAGTTATATATGGGGTTTCTACGTTTAAATTGGAATTGGAGAAGAGTATCAATAGCTGTAACAGTGCAGAAGCAGCGCACTGATTGGCCTGACCTGTTTTGGAAATTCCTGTAGTTATAAGCATGATGGAGAAGGCTAGTGTTCTTCGAATTTGATGAATTTATTTAAACCAATTATAAAGGAACACAGTTTAATATTGAGATGTGATGTGGGGTTATTGATTGAGCTTGAGGCTTGACCTACCTGTAAACTTCCATCCGTAATAATATCACTCTGCCATGTGGTTGGTTTGGATTGTATATTGCAGTTCCTTCTTTTTCATGTTTAAATTCTTCCTTCTACTTTCTCTGGTAGCTAAGCGTGCTTTTATGAAAGAGTTTGACTAGTATGACCTTTATGTAGATTAGGGGTTAATACAATCTCGATAGTATCGAACCTAAACCCAATTCCCACGTTCCACAAAGAGAACAAGAGGAACAACTACCCAATGGTGCTTTTACGAAAGAATTTAACTAATATGATTTTCTTTTTTTTTTTTTAGATTAGGGGTTAATACAATCTTGACAATATCAAACCTAAAAATCTACTTTCGGTTGCTCTTTCTAGTGGGGAGGACTTTTGAAGACGTATATGCGATTTGTGATCCCGACTCAGAGGATGTCCCAAGAAGACGAACCAAAGAAAAGGGTTATATACTTTCATTGAGATAATGTGCCTAGAATCCTTCTTATAACTTCTTAAAAACGCCCTAGACTGATCCAGACAACAAATGAATTAGTCATGATCCTCTCATTTCATGACACCTTATAATAAACAAGGCCTGTTTCTAGGGAAGATAAAGTTGATAAATCTAATTGGGAATCCTCCAAATCCTTATTTTTCTTAGTTGGCGCCTAAATTGCCACTGGCCAATCATATTTGGAAGCTAAACTAAAGTGGGAATCCTAATACCAATCCCATGGCTATCCCAGGATTCTTACCAACTAAGCTACCTCTCTGTGTATTATTTGCATTTCCTGACTTATAATGACTATGGTTTACTTCATGCAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATACATCGACCATCGGCTCTAAGTATGGTAAGTCGATAAAGCGAGGGATCATATCGTTTCTAAATGTCGACGATAGCAGATTTACTCAGGTTGATGAACTTCAGTGTGTGCCTCATTTCTCGAAGCACTCGTGGGGCCTATTTCGTCGAAGAATCAAGCTACTATGTCGAAAGTGTGGAAACCATATTGGAAATGCTAACACAAGCCACACTTTCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCTTTGCCCAGTGAAGTCAATAGGTGTACGAAATATGAAGTTAAAATCCGTGCCTTACAACCCTCATCTTCACACGAATTTGACCCTTCAGTTATTTAAACAACGGGACAAGGCTTTACTGAATGGGTCCTCCTCCGAGTGTGCTATTTACTTGTGAATAAGAATTGGGTCTGAAATGGAAGCAAGTGTAATGGAAAGGATTCACAGCTATTGTTCCTGCCAACTAAAGGATGATTTATACGAGGGAGTTGTTTCGAAGCTACTGATGTTTTTGGTTTGTTTTTCGTTTTGCAACAAAGCATTGTTTAATGTGGCTTTATCGAAGTAACAAATTTAGTCTTCAAATTCTCTAGTTTGTATTTATTTGATTTCTAAGTTTTAAAACGTGTCTATAATAGTTATTTGAACTTTGAAATTTCATATTCAAAACTTATATAAGACTGACTCCATTAG

mRNA sequence

GTTCTTCCAATTCACCACACTTCGTCTCTTAGAAACTGCGATTTTTCTCTTAGGTCATATCTTCTGTTATTGTTTCGAGTTCGCTAAGATTAACTCCGAACTTGTTCATTATTGTTTTTTGTAACCGCGATTCGTCGTTTACCACCTCGAAATCTCCGTCGACCGTTGCAGCCGGCGTCGGAGTCAGTGTCGTATTCTGAACCGGAGGAATGACGCAGTCGCCGGATTTCGGAGGCGATTACACCGACGGAACTCACCACGTACAGTCCTTTTCGTCGACCTCTCTCTACTCTTCTTCGTCTCGCCGAGATGTTTATTACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATACATCGACCATCGGCTCTAAGTATGGTAAGTCGATAAAGCGAGGGATCATATCGTTTCTAAATGTCGACGATAGCAGATTTACTCAGGTTGATGAACTTCAGTGTGTGCCTCATTTCTCGAAGCACTCGTGGGGCCTATTTCGTCGAAGAATCAAGCTACTATGTCGAAAGTGTGGAAACCATATTGGAAATGCTAACACAAGCCACACTTTCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCTTTGCCCAGTGAAGTCAATAGGTGTACGAAATATGAAGTTAAAATCCGTGCCTTACAACCCTCATCTTCACACGAATTTGACCCTTCAGTTATTTAAACAACGGGACAAGGCTTTACTGAATGGGTCCTCCTCCGAGTGTGCTATTTACTTGTGAATAAGAATTGGGTCTGAAATGGAAGCAAGTGTAATGGAAAGGATTCACAGCTATTGTTCCTGCCAACTAAAGGATGATTTATACGAGGGAGTTGTTTCGAAGCTACTGATGTTTTTGGTTTGTTTTTCGTTTTGCAACAAAGCATTGTTTAATGTGGCTTTATCGAAGTAACAAATTTAGTCTTCAAATTCTCTAGTTTGTATTTATTTGATTTCTAAGTTTTAAAACGTGTCTATAATAGTTATTTGAACTTTGAAATTTCATATTCAAAACTTATATAAGACTGACTCCATTAG

Coding sequence (CDS)

ATGACGCAGTCGCCGGATTTCGGAGGCGATTACACCGACGGAACTCACCACGTACAGTCCTTTTCGTCGACCTCTCTCTACTCTTCTTCGTCTCGCCGAGATGTTTATTACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATACATCGACCATCGGCTCTAAGTATGGTAAGTCGATAAAGCGAGGGATCATATCGTTTCTAAATGTCGACGATAGCAGATTTACTCAGGTTGATGAACTTCAGTGTGTGCCTCATTTCTCGAAGCACTCGTGGGGCCTATTTCGTCGAAGAATCAAGCTACTATGTCGAAAGTGTGGAAACCATATTGGAAATGCTAACACAAGCCACACTTTCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCTTTGCCCAGTGAAGTCAATAGGTGTACGAAATATGAAGTTAAAATCCGTGCCTTACAACCCTCATCTTCACACGAATTTGACCCTTCAGTTATTTAA

Protein sequence

MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNANTSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI

Homology

[Close]

BLAST of CmaCh01G013960 vs. ExPASy Swiss-Prot
Match: Q9STN5 (Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g08330 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 92/152 (60.53%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 9   GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKR 68
           G +     +  SFSS+S  SSSS R V YSCG+CGYELNLSS+NR TSTIGSKYGKS+K 
Sbjct: 12  GRFGGNQFYSPSFSSSS--SSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKS 71

Query: 69  GIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNANTSHTFSTP 128
           GIISF N+D+ RF+QVDE QC+PHFS++SWGLFR R KLLCRKC N+IGNA+        
Sbjct: 72  GIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYA 131

Query: 129 LVSDGSDSSLPSEVNRCTKYEVKIRALQPSSS 161
           LV+  SD + P  +   TKY+++IR+LQPSS+
Sbjct: 132 LVTQNSDPTSP-RIGSVTKYDIRIRSLQPSSA 160

[Close]

BLAST of CmaCh01G013960 vs. ExPASy TrEMBL
Match: A0A6J1IVF4 (uncharacterized protein At4g08330, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480321 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.1e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN
Sbjct: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI
Sbjct: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 168

[Close]

BLAST of CmaCh01G013960 vs. ExPASy TrEMBL
Match: A0A6J1FN39 (uncharacterized protein At4g08330, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445766 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 7.5e-89
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKC NHIGNA+
Sbjct: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCENHIGNAD 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TSHTFSTPLVSDGSDSS PSEV+RCTKYEVKIRALQPSSSHEFDPSVI
Sbjct: 121 TSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI 168

[Close]

BLAST of CmaCh01G013960 vs. ExPASy TrEMBL
Match: A0A6J1C0S6 (uncharacterized protein At4g08330, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007277 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 145/168 (86.31%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           M QSP  G DY DGTH   SFS+ SLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MKQSPVVGDDYIDGTHS-HSFSAASLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNA+
Sbjct: 61  KYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAH 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TS   S PLVSDGSDSSLP EV+RC KYEVKIRALQPSSSH+F P VI
Sbjct: 121 TSRASSIPLVSDGSDSSLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI 167

[Close]

BLAST of CmaCh01G013960 vs. ExPASy TrEMBL
Match: A0A0A0L375 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363480 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 143/169 (84.62%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           M QSP FG DY  GT HVQSFSS SL+ SSSRRDVYYSCGACGYELNLSS NRNTSTIGS
Sbjct: 1   MRQSPVFGDDYAHGT-HVQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLN+D+SRFTQVDELQCVPHFSK+SWGLFRRRIKLLCRKCGN+IGNA+
Sbjct: 61  KYGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAH 120

Query: 121 TSHTFSTPLVSDGSD-SSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           ++HT S+PLVSDGSD SSLP+EV+RC KYEVKIRALQPSSS+EF+PS+I
Sbjct: 121 SNHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]

BLAST of CmaCh01G013960 vs. ExPASy TrEMBL
Match: A0A5D3D741 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00930 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.5e-73
Identity = 142/169 (84.02%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           M QSP FG DY  GT H+QSFSS SL+ SSSRRDVYYSCGACGYELNLSS NRNTSTIGS
Sbjct: 1   MRQSPVFGDDYAHGT-HIQSFSSASLFPSSSRRDVYYSCGACGYELNLSSINRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLN+D+SRFTQVDELQCVPHFSK+SWGLFRRRIKLLCRKCGN+IGNA+
Sbjct: 61  KYGKSIKRGIISFLNIDESRFTQVDELQCVPHFSKNSWGLFRRRIKLLCRKCGNYIGNAH 120

Query: 121 TSHTFSTPLVSDGSD-SSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           ++HT S+PLVSDGSD SSLP+EV+RC KYEVKIRALQPSSS+EF+PS+I
Sbjct: 121 SNHTASSPLVSDGSDSSSLPNEVSRCMKYEVKIRALQPSSSNEFEPSII 168

[Close]

BLAST of CmaCh01G013960 vs. NCBI nr
Match: XP_022981061.1 (uncharacterized protein At4g08330, chloroplastic [Cucurbita maxima])

HSP 1 Score: 344.7 bits (883), Expect = 4.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN
Sbjct: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI
Sbjct: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 168

[Close]

BLAST of CmaCh01G013960 vs. NCBI nr
Match: XP_023523702.1 (uncharacterized protein At4g08330, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 165/168 (98.21%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           MTQSPDFGGDYTDGTHHVQSFSSTSLYS+SSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSASSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN
Sbjct: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TSH+FSTPLVSDGSDSSLPSEV+RCTKYEVKIRALQPSSSHEFDPSVI
Sbjct: 121 TSHSFSTPLVSDGSDSSLPSEVSRCTKYEVKIRALQPSSSHEFDPSVI 168

[Close]

BLAST of CmaCh01G013960 vs. NCBI nr
Match: KAG6608059.1 (putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031688.1 putative protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           MTQSPDFGGDYTDGTHH QSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MTQSPDFGGDYTDGTHHGQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN
Sbjct: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TSHTFSTPLVSDGSDSSLPSEV+RCTKYEVKIRALQPSSSHEFDPSVI
Sbjct: 121 TSHTFSTPLVSDGSDSSLPSEVSRCTKYEVKIRALQPSSSHEFDPSVI 168

[Close]

BLAST of CmaCh01G013960 vs. NCBI nr
Match: XP_022940003.1 (uncharacterized protein At4g08330, chloroplastic [Cucurbita moschata])

HSP 1 Score: 336.3 bits (861), Expect = 1.6e-88
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKC NHIGNA+
Sbjct: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCENHIGNAD 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TSHTFSTPLVSDGSDSS PSEV+RCTKYEVKIRALQPSSSHEFDPSVI
Sbjct: 121 TSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI 168

[Close]

BLAST of CmaCh01G013960 vs. NCBI nr
Match: XP_022135315.1 (uncharacterized protein At4g08330, chloroplastic [Momordica charantia])

HSP 1 Score: 288.9 bits (738), Expect = 2.8e-74
Identity = 145/168 (86.31%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 1   MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60
           M QSP  G DY DGTH   SFS+ SLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS
Sbjct: 1   MKQSPVVGDDYIDGTHS-HSFSAASLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGS 60

Query: 61  KYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNAN 120
           KYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNA+
Sbjct: 61  KYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAH 120

Query: 121 TSHTFSTPLVSDGSDSSLPSEVNRCTKYEVKIRALQPSSSHEFDPSVI 169
           TS   S PLVSDGSDSSLP EV+RC KYEVKIRALQPSSSH+F P VI
Sbjct: 121 TSRASSIPLVSDGSDSSLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI 167

[Close]

BLAST of CmaCh01G013960 vs. TAIR 10
Match: AT4G08330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 181.0 bits (458), Expect = 7.8e-46
Identity = 92/152 (60.53%), Postives = 114/152 (75.00%), Query Frame = 0


Query: 9   GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKR 68
           G +     +  SFSS+S  SSSS R V YSCG+CGYELNLSS+NR TSTIGSKYGKS+K 
Sbjct: 12  GRFGGNQFYSPSFSSSS--SSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKS 71

Query: 69  GIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNANTSHTFSTP 128
           GIISF N+D+ RF+QVDE QC+PHFS++SWGLFR R KLLCRKC N+IGNA+        
Sbjct: 72  GIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYA 131

Query: 129 LVSDGSDSSLPSEVNRCTKYEVKIRALQPSSS 161
           LV+  SD + P  +   TKY+++IR+LQPSS+
Sbjct: 132 LVTQNSDPTSP-RIGSVTKYDIRIRSLQPSSA 160

[Close]

BLAST of CmaCh01G013960 vs. TAIR 10
Match: AT4G08330.2 (unknown protein. )

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-36
Identity = 82/152 (53.95%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 9   GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKR 68
           G +     +  SFSS+S  SSSS R V           N SS+NR TSTIGSKYGKS+K 
Sbjct: 12  GRFGGNQFYSPSFSSSS--SSSSMRHV-----------NYSSTNRITSTIGSKYGKSMKS 71

Query: 69  GIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCRKCGNHIGNANTSHTFSTP 128
           GIISF N+D+ RF+QVDE QC+PHFS++SWGLFR R KLLCRKC N+IGNA+        
Sbjct: 72  GIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYA 131

Query: 129 LVSDGSDSSLPSEVNRCTKYEVKIRALQPSSS 161
           LV+  SD + P  +   TKY+++IR+LQPSS+
Sbjct: 132 LVTQNSDPTSP-RIGSVTKYDIRIRSLQPSSA 149

The following BLAST results are available for this feature:

BLAST of CmaCh01G013960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STN5	1.1e-44	60.53	Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CmaCh01G013960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVF4	2.1e-91	100.00	uncharacterized protein At4g08330, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FN39	7.5e-89	97.62	uncharacterized protein At4g08330, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1C0S6	1.4e-74	86.31	uncharacterized protein At4g08330, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A0A0L375	1.2e-73	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G363480 PE=4 SV=1	[more]
A0A5D3D741	1.5e-73	84.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh01G013960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981061.1	4.4e-91	100.00	uncharacterized protein At4g08330, chloroplastic [Cucurbita maxima]	[more]
XP_023523702.1	1.1e-89	98.21	uncharacterized protein At4g08330, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6608059.1	1.1e-89	98.81	putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
XP_022940003.1	1.6e-88	97.62	uncharacterized protein At4g08330, chloroplastic [Cucurbita moschata]	[more]
XP_022135315.1	2.8e-74	86.31	uncharacterized protein At4g08330, chloroplastic [Momordica charantia]	[more]

BLAST of CmaCh01G013960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G08330.1	7.8e-46	60.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G08330.2	1.9e-36	53.95	unknown protein.	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33674	METHIONINE-S-OXIDE REDUCTASE	coord: 17..163
None	No IPR available	PANTHER	PTHR33674:SF8	NITRATE REDUCTASE [NAD(P)H]-LIKE ISOFORM X1	coord: 17..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G013960.1	CmaCh01G013960.1	mRNA