CmoCh17G012530 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G012530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 9890303 .. 9891777 (+)
RNA-Seq ExpressionCmoCh17G012530
SyntenyCmoCh17G012530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAGTCATCACCGTTGACACGTTTGCCGGGGTTATGTCGACCACCTTACCGTTCGAGCTCAAATTAGGCTCGAACACGGACCATGGGATCCCTGTGGCACAATGGATCACTGCATCATACTTCTTGCCTGATGGACTCTTCAAGGCTGCCCCTTCTGAGGTCTTGTAGTCTATGACCTCATCTGCGCCCAAGCTCTTCACGAACTCGATGTTTCGAGCGCCACACGTAGCGGTCACGTGAGTGTTTCCTAGCTTTGCTAGCTGAACGGCGTAGTGGCCGACGCCGCCAGAGGCAGCTGTGATGAGAATGTTTAATTGAGGGCCGTTTGCATCAAGCTTGATCCCAGCAGCTTGGGTGAGAGCTTGGTGTGCTGTTAAAGCCGCAACAGGCAGAGCAGCGCCATCGGCTGCGGTCACTTCGGGCGGCCTAATAACTGTTGAAGCTTCCTTTGCTACAACATATTCAGCAAGTCCACCTCCGGTCTGTCATTGTCATACATACAAAAAGATGAACACTTCCAATAGCATATGAATCAAAGATGCAACTCTTGAGCTCAAGTTCATTGGCTCTCGTACCATTCGTAATAGCTCAAGCCTATCTCTAGCAGACATTACTTTGACCCGTTACGTATAGCCGTCAGCTTCACGATTTTAAAACGCATTTGTTAAGGAGAGGTTTCCACACCCTCATAAGGAATGTTTCGTTCTCTTCTCCAATCGACGCGGGATCTCACAATTCATCTCTCTTGGGGGCCCAACCTCCTCATTGGCACACCACTCGGTGTCTTGACCATTTGTAACAGTCAGACACTAGGCGGTATGCCCTCGAGTACGTTGGGCCCCTATGAGGTGGATTGTGAGATCCCACATCCGTTAGAGAGAGGAACGAAGCATTTTTTATAAAGGTATGGAAACCTCTCCCTAACAGATACATTTTAAAACCGTGAAACTGACGACAATAGGTAACGAGCCAAAATAGACAATATCTACTAGTGGTGGGCTTGAACTGTTATCGAACAAAGTCATGATTTCCTTGCTCATGGTTATCAAAGATTAACCGTGGAAAAGGGTGAATGAATACTTACAGCATGGTTAAGAAACGTCACGACTTTGTCCCCAACTTTTAACCTCTTCACCCGTGATCCGACCTCTAAAACTTCTCCCGCCACATCAGTACCTGTTTCAAATTTATTGTCAGTCATACTGTGACAGTCTCATCAAATAATTCATCGCTAAACTAAGCTTCAAAGCCAAACCGAGAATTCAGAACGAACATGGAATATGAGGAAAGTTTCGAGGAAGAAAGGGACGGACGACTCCCTTCTGAATTTTCCAATCAAATGGATTCAGACTAACTGCTTCTACTTTCAGCAAAACCTCATCGTCTTTGGGTCCGGGAATCGGAACTTCTACATGCTGCACGAAGAAACGATATCGGACGTCGAGATCAAACCATCAACTTTGAAATAG

mRNA sequence

ATGGCGAAAGTCATCACCGTTGACACGTTTGCCGGGGTTATGTCGACCACCTTACCGTTCGAGCTCAAATTAGGCTCGAACACGGACCATGGGATCCCTGTGGCACAATGGATCACTGCATCATACTTCTTGCCTGATGGACTCTTCAAGGCTGCCCCTTCTGAGGTCTTCTTGATCCCAGCAGCTTGGGTGAGAGCTTGGTGTGCTGTTAAAGCCGCAACAGGCAGAGCAGCGCCATCGGCTGCGGTCACTTCGGGCGGCCTAATAACTGTTGAAGCTTCCTTTGCTACAACATATTCAGCAAGTCCACCTCCGCAAAACCTCATCGTCTTTGGGTCCGGGAATCGGAACTTCTACATGCTGCACGAAGAAACGATATCGGACGTCGAGATCAAACCATCAACTTTGAAATAG

Coding sequence (CDS)

ATGGCGAAAGTCATCACCGTTGACACGTTTGCCGGGGTTATGTCGACCACCTTACCGTTCGAGCTCAAATTAGGCTCGAACACGGACCATGGGATCCCTGTGGCACAATGGATCACTGCATCATACTTCTTGCCTGATGGACTCTTCAAGGCTGCCCCTTCTGAGGTCTTCTTGATCCCAGCAGCTTGGGTGAGAGCTTGGTGTGCTGTTAAAGCCGCAACAGGCAGAGCAGCGCCATCGGCTGCGGTCACTTCGGGCGGCCTAATAACTGTTGAAGCTTCCTTTGCTACAACATATTCAGCAAGTCCACCTCCGCAAAACCTCATCGTCTTTGGGTCCGGGAATCGGAACTTCTACATGCTGCACGAAGAAACGATATCGGACGTCGAGATCAAACCATCAACTTTGAAATAG

Protein sequence

MAKVITVDTFAGVMSTTLPFELKLGSNTDHGIPVAQWITASYFLPDGLFKAAPSEVFLIPAAWVRAWCAVKAATGRAAPSAAVTSGGLITVEASFATTYSASPPPQNLIVFGSGNRNFYMLHEETISDVEIKPSTLK
Homology
[Close]
BLAST of CmoCh17G012530 vs. ExPASy TrEMBL
Match: A0A7C8Z3M0 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 5   ITVDTFAGVMSTTLPFELKLGSNTDHGIPVAQWITASYFLPDGLFKAAPSEV 57
           +T     GV S TLPF LK GS  D G+PVA W+TASYFLPDGLFKA PS V
Sbjct: 108 VTTAVGPGVKSITLPFSLKFGSKVDQGMPVALWMTASYFLPDGLFKATPSGV 159

[Close]
BLAST of CmoCh17G012530 vs. ExPASy TrEMBL
Match: A0A445E1V8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015866 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 12 GVMSTTLPFELKLGSNTDHGIPVAQWITASYFLPDGLFKAAPSEV 57
          GV S T P  +KLG   DHGIPV Q ITASYFLPDGLF+AAPS V
Sbjct: 30 GVKSITFPLSVKLGLKVDHGIPVVQCITASYFLPDGLFRAAPSGV 74

[Close]
BLAST of CmoCh17G012530 vs. ExPASy TrEMBL
Match: A0A7N0UTW4 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.9e-07
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 12 GVMSTTLPFELKLGSNTDHGIPVAQWITASYFLPDGLFKAAP 54
          GVMSTT P  L+ GS  D G+P+ QWITASYF  +GLF AAP
Sbjct: 57 GVMSTTTPLALRFGSKVDQGMPIVQWITASYFFSEGLFNAAP 98

[Close]
BLAST of CmoCh17G012530 vs. ExPASy TrEMBL
Match: A0A445A6I3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067316 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 48  LFKAAPSEVFLIPAAWVRAWCAVKAATGRAAPSAAVTSGGLITVEASFATTYSASPPP 106
           +F   P    L PA  VRA  AV+ ATGRAA SAA TS GLI V+ S AT YSA+PPP
Sbjct: 1   MFFCWPDPSSLTPAISVRASRAVRPATGRAAASAADTSAGLIAVKLSLATAYSANPPP 58

[Close]
BLAST of CmoCh17G012530 vs. ExPASy TrEMBL
Match: A0A0A9CY11 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 67  WCAVKAATGRAAPSAAVTSGGLITVEASFATTYSASPPPQN 108
           W AV AA G  APSAA TSGGL+T+  S AT YSASPPP+N
Sbjct: 21  WSAVLAAMGSPAPSAADTSGGLLTIRLSDATAYSASPPPEN 61

[Close]
BLAST of CmoCh17G012530 vs. NCBI nr
Match: RYR69311.1 (hypothetical protein Ahy_A03g015866 isoform C [Arachis hypogaea])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 12 GVMSTTLPFELKLGSNTDHGIPVAQWITASYFLPDGLFKAAPSEV 57
          GV S T P  +KLG   DHGIPV Q ITASYFLPDGLF+AAPS V
Sbjct: 30 GVKSITFPLSVKLGLKVDHGIPVVQCITASYFLPDGLFRAAPSGV 74

[Close]
BLAST of CmoCh17G012530 vs. NCBI nr
Match: CAB3457500.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 61.6 bits (148), Expect = 6.0e-06
Identity = 42/94 (44.68%), Postives = 46/94 (48.94%), Query Frame = 0 

Query: 12  GVMSTTLPFELKLGSNTDHGIPVAQWITASYFLPDGLFKAAPSEVFLIPAAWVRAWCAVK 71
           GV STT+      G+N DHG+PVAQ  TAS                           AV 
Sbjct: 66  GVTSTTVACSASTGANVDHGVPVAQCATAS---------------------------AVD 125

Query: 72  AATGRAAPSAAVTSGGLITVEASFATTYSASPPP 106
           AA GR APSAA TSGG  TV  + AT YS SPPP
Sbjct: 126 AAVGREAPSAADTSGGRDTVSDAGATAYSPSPPP 132

The following BLAST results are available for this feature:
BLAST of CmoCh17G012530 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7C8Z3M01.7e-0965.38Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A445E1V82.4e-0871.11Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g015866 PE=4 SV=1[more]
A0A7N0UTW45.9e-0764.29Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
A0A445A6I36.1e-0458.62Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067316 PE=4 SV=1[more]
A0A0A9CY117.9e-0468.29Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CmoCh17G012530 vs. NCBI nr
Match NameE-valueIdentityDescription
RYR69311.14.9e-0871.11hypothetical protein Ahy_A03g015866 isoform C [Arachis hypogaea][more]
CAB3457500.16.0e-0644.68unnamed protein product [Digitaria exilis][more]
BLAST of CmoCh17G012530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012530.1CmoCh17G012530.1mRNA