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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTCTCTGCCTTTTTCTTCTCACTTCCGCTGGCGAAGAAATCGTGGCCTCCATTGATCTCTGGTGGCAGAACCACCGTTTCTTCATGTTCCCCTCTTCTCTCTCACCGTCTCTGCAACTCCTTCTTTTTCCGTAACAAGAACAACGCCCTTTGTCAGGAAGAAGGAGAATCAAAGCATTCAACCAATGGATTCTCTGGTTAGTATTTTGAATTTATTTACGGAAAAAATGCAGAAATATTTGATTCATGAGATTTCAATTTGAGAATTCCAATTCTTCACTTCTTTTCATCCCTCCTATTAATCTCACGAACGCGCAATGCTTTATGGATTCTTTAAACAGTAGCATCATGATTTTTTTTCATATCTAAAGCTCCAGATTCTAATATCAATCCTCATTCAAATACTCGCATTTTGTTATCAAAATCATTAAGAAATTACTGTTTGATCTTACAGTTAGGTTAGGCAATAAGATTTAAGAAAGAGTTTGATCATCATCAGGCTTGCAATTTGAGTAGTATGCACACATTCATTCACTATTTAATTATCCGCTGCCTAGTTTTCCAATGTTTCGATTCTTTTATATCCGATGATCTGATATCAACATTTCTGAATTGTGGAACTGTGAATGAAAGTATTCATCTGTATTTTCAAGCTGCTAGGCTAGTTTATGGCGATGCATAGTTCTTTTACTGAAAGATTTTCAAGTTTTTCCAGTATTGTAATTTCTTAATTGTGAATTCCAAGCTATTTGGCGATGGATATTGGACGTTGATCATGGCCGGAAATGGAATCTGAAAGACCTCACAACTCATTCTAATCTGTCTATGATGAATTCAAGGTTTGAAGTACTCCTCAACTGAATTTACAGCATTTCTCTTGCGATCTTCATAGAAACGTAATTATGCAACTGTGTGGTACTAGCTCTATTTGGTAGGGATGCATGCCTTAGTGCTTCGATTCTTCTTACAGATTGAATCCATAGAATGTCGGACTACTTAGTTTCACCATGATCCGTTCTTTGTTATTACCAAAATTGTTTGTTTATGGTCATCTGATCTTGTTCCATCAAAGTTTCAGGCAAGATCTACCCATATACTTCAAAATTATTATGTCTTTGGAAGATCTGAATAGAAACGAGTGTCAGCGAGGATATTGGGCTTGGAAGGAGAATAAATTGTGAGATCCGATATGGAGAGGAGGGGAGAGGGGAACGAGTGCTAGCAAGGACTCTGGGCTCCGTCGGGGAGTGGATTGTGAAATTCCACATCAGTTGGAGAGAATAACGACATCGGAGAGGGAACGAGTGCCGGCGAAGATGTTGGGATTCGAAGGGAAGTGGATTGTGAAATCCCATATTGATTGGAGAGGATAACGAAATCGATTGGAGAGGGAAATAAGTATCAACGAGGACGCTGAGTCCAGGGTAGAGTGTGAGATCATACATCTGTTTGATAAGAGAACAAAACATTTTTTTTTTTGTAAGGGTGTGAAAATTTATCTCTAGCAAACATTTTTGTAAGGGTGTGAAAATTTAACATTATTGGTAGGAGTGTGAAAATTTCTCTCTAACCGAAACATTTAAAATATTAAAATCTCTTTCACTCTTACTGAACCATTTTTTATAAAAGTGTGAATATCTATTGATATATACGAACAGTGGGCAATGGAAGCCGTAAAGCCACGAAAGAAAAGACAAGATGA mRNA sequence ATGGTCTCTGCCTTTTTCTTCTCACTTCCGCTGGCGAAGAAATCGTGGCCTCCATTGATCTCTGGTGGCAGAACCACCGTTTCTTCATGTTCCCCTCTTCTCTCTCACCGTCTCTGCAACTCCTTCTTTTTCCGTAACAAGAACAACGCCCTTTGTCAGGAAGAAGGAGAATCAAAGCATTCAACCAATGGATTCTCTGTGGGCAATGGAAGCCGTAAAGCCACGAAAGAAAAGACAAGATGA Coding sequence (CDS) ATGGTCTCTGCCTTTTTCTTCTCACTTCCGCTGGCGAAGAAATCGTGGCCTCCATTGATCTCTGGTGGCAGAACCACCGTTTCTTCATGTTCCCCTCTTCTCTCTCACCGTCTCTGCAACTCCTTCTTTTTCCGTAACAAGAACAACGCCCTTTGTCAGGAAGAAGGAGAATCAAAGCATTCAACCAATGGATTCTCTGTGGGCAATGGAAGCCGTAAAGCCACGAAAGAAAAGACAAGATGA Protein sequence MVSAFFFSLPLAKKSWPPLISGGRTTVSSCSPLLSHRLCNSFFFRNKNNALCQEEGESKHSTNGFSVGNGSRKATKEKTR
Homology
BLAST of CmoCh16G007160 vs. NCBI nr
Match: KAG7015344.1 (hypothetical protein SDJN02_22979, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13 Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0
Query: 24 RTTVSSCSPLLSHRLCNSFFFRNKNNALCQEEGESKHSTNGFS 67
RTTVSSCSPLLSHRLCNS FFRNKNNALCQEEGESKHSTNGFS
Sbjct: 48 RTTVSSCSPLLSHRLCNS-FFRNKNNALCQEEGESKHSTNGFS 89
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| KAG7015344.1 | 2.3e-13 | 97.67 | hypothetical protein SDJN02_22979, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..80 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..72 |
Relationships
The following mRNA feature(s) are a part of this gene:
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