CmoCh11G016270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G016270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr11: 11596033 .. 11598804 (-)
RNA-Seq Expression	CmoCh11G016270
Synteny	CmoCh11G016270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTTTTCAATCTCTCTGCTCCGTTTCCCTCTCTTTCTCTCTCCTAAACCCCCATTTTCAGTCCCGGATGATCACAGTGGCATTAGGTTAAGAATCAAACAACCAAATTCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGGTATTACTTCTTTTTCTTCTTCTTGATTTTCTACAACTGTAATTCCGTTTGTTTTGTTCTTTTTCTTTGTTACTTTTGTGTTGATTGATGAACTTTGATGCTTTGAAATTAGTGGTTAGGACCATTTTTGCCTACTGATCTTCTGAAGCGAAGTCATGTGCGATCTAAAGTGTTTGGTTCTTTCTTTTTCTAGTTGAATATCTTATGGAATCATTGCCTTTTGGACATATTGTTTAATTGGATTGATGATGTTGATCTAGGTCCCATTTGTTTTGTATTATCTAAATCTTCAGAGATTGATGAACAGAGGAATTTTACTTTTTCCCCCTTTAATTGTTTTTAATAATTGTTCATTAAAATTAGAGAAATCCTAGATTTCCTTTCTGTCTCTTGTGGCTTGATGATCAAATTTATTAGAAGGAATTTGGGATTGTTCTGTGTTCTGAGATGAAGAAATCATTCCTTTGTTCATTGGATGCTCTGTTTCCTGTGAAGTTCTATGTATTGTTCTGAGTGGATTGTGGTTGATTATTGAACTGCTATAAGAAAAAAAAGTCTCATAGAGCTTTGTTACTATAGTTTTCTCGCTTTTTATACGAGAAATTATTAGAGGAAGCTGTCACTATGTGATGTTCGATTTCGGATGGTTGGATGTAGGAAAAATGCTTCAAAGATATTTCAAATCTTGTATTTAGACCCGCGGTTTTTCGAATCCTTACCTAACAATTATTAAGAGGTTGTGAGGACAATATCTTCTAGCAGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCAAGATACCGGGCAGTGCGCCAGCTAGGACGCTGGGCCCCGAAGGGGGTGGATTATGAGACCCCACGTCAATTGGAGAGAGAAACGAGTGCTAGCGAGGACGCTGGGCCTCGAAGGGGGTGGATTGAGATCCCGCATCGATTGGAAAGAAGAACGAGTGTCAGCGAGGACGTTGGACCCTGAAGAGGGGTGGATTGTGAGATCCCACATTGGTTGAAGAGGGGAACGAAGCATTTTTCATAAGAATGTGGAAACCTCTCCTTAGCATATGCGTTTTTAAAACCTTGAGGAGAAGCCCGAAAGGGAAAGCCAAAAGAGGACAATATCTGCTAGCGGTGGGCTTAGGGTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTGTTACAGAAGTAGAAGTAGTCTTTGTTACAGAAGTAGAAGTAGTCTTTGTTATAGGGATTGCTATCCAACAGAAGTAGAAGTAGTCTTTGTTATAGGGATTGCTATCTTTGATGGATAGTTTCTTGTTTCTCTTAATTTCACATGAATCATGCTAGGGTTCATGTGAAGTGAAGAATGCTAACTCGAAAAACTTTTCACCAAAAATCGAACCCAGTAACTCGAAAAACTTCTCGTGTCTTTTTGGTATGATTTTTCAATCCCATGGTTTGTTTAGGCTGCTATTGCTCGTTTTTTTTAATATCCGTGAATGTTCGGGCCTCAACTATTCTCACATGACAACTGTCTCATCCTAGCATGTTTGATTGCTAAAGTAACTCGTAGGATATTAAATCCTAAGTAGATGGTCACTCCGACTTAAACTCGTTCTTTCTAAGCCCTTCACAATTTATACGACCCTTATTGATCACTAGGCGGCGTTCATATGATTGAATTCTTTCTTTTATGTCCTTGAATTTATTCCTTATGTTTTGGGTAATTTGTTCTATGTTGGCTGTTCTATGAAAGAAGTTGACAATAGAACTGTGCTGTTTTCATAGGTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGGTAAGTAGACATTTAAAACGTTCGTTTACTCTAATAGATCATATCATATTAGAAATGATCTTATAGGTTTCCGAACTTTCAATCTTTCAATTTTGTGAGCTTAAAGAATTCTTTTTATGCTAGTTGCATTTTGATCTCTTCTCCTAAAAGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA

mRNA sequence

CAACTTTTTCAATCTCTCTGCTCCGTTTCCCTCTCTTTCTCTCTCCTAAACCCCCATTTTCAGTCCCGGATGATCACAGTGGCATTAGGTTAAGAATCAAACAACCAAATTCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA

Coding sequence (CDS)

ATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA

Protein sequence

MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGVFVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV

Homology

[Close]

BLAST of CmoCh11G016270 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.2e-05
Identity = 45/131 (34.35%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 105 DFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSP-TGKKKLAELFRDSSRKDS 164
           DFTPS GNTP   SFS   PR + +   + +       P+P   +KKL ELFRDS R++ 
Sbjct: 106 DFTPSLGNTP-KSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIREER 165

Query: 165 DIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGP 224
           +        E    S    P++S  N    S E         EK++       CLP    
Sbjct: 166 E--------ESGSSSAISTPYLSGAN----SREFNDTAIEKEEKKKSNWHHHRCLPGFSS 223

Query: 225 C-RSFGDRRKK 234
           C  SF +RRKK
Sbjct: 226 CGGSFMERRKK 223

[Close]

BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A6J1EK04 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111435186 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110
Identity = 211/240 (87.92%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV
Sbjct: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHPSFS
Sbjct: 61  FVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHPSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV
Sbjct: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 234

[Close]

BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A6J1JKY5 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111486720 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.9e-99
Identity = 197/240 (82.08%), Postives = 200/240 (83.33%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSI RNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALI+G        G GGVGGV
Sbjct: 1   MGSCVSIQRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALING--------GAGGVGGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHPSFS
Sbjct: 61  FVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHPSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           S TP INQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP
Sbjct: 121 SNTPWINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           EK HVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV
Sbjct: 181 EKSHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 226

[Close]

BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A0A0LB55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588480 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74
Identity = 155/240 (64.58%), Postives = 170/240 (70.83%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSC SIHRN DSA+KF+LS+ SKT +M IPPSPIK NN  I+                V
Sbjct: 1   MGSCASIHRNPDSAMKFKLSLASKTTDMEIPPSPIKQNNTPINPT--------------V 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           F+KSQ SPS L           GW+            YS+    DFTPSRGNTPVH SFS
Sbjct: 61  FLKSQTSPSHLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHSSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVH ID+QTPI +PEPSPTGKK+LAELFR+SSR  +D QAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHGIDDQTPITIPEPSPTGKKRLAELFRESSRNGTDRQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           E P++S TNSVC SSERT NGDVW EKERP GS QCCLPSLG C SFGDRRKKA PAI V
Sbjct: 181 ETPYISGTNSVC-SSERTPNGDVWGEKERPFGSVQCCLPSLGSCHSFGDRRKKASPAIAV 219

[Close]

BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A1S3BP47 (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103491777 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 5.7e-74
Identity = 155/240 (64.58%), Postives = 168/240 (70.00%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSC SIHRN DSA+KF+LS+ SKTN+M IPPSPIK NN  I+                V
Sbjct: 1   MGSCASIHRNPDSAMKFKLSLASKTNDMAIPPSPIKQNNTPINPT--------------V 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           F KSQ SPS L           GW+            YS+    DFTPSRGNTP H SFS
Sbjct: 61  FHKSQTSPSHLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPTHSSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVH ID+QTPI +PEPSPTGKKKLA+LFR+SSR  +D QAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHGIDDQTPITIPEPSPTGKKKLADLFRESSRNGTDRQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           E P+VS TNSVC SSERT NGDVW EKERP GS QCCLPSL  C SFGDRRKKA PAI V
Sbjct: 181 ETPYVSGTNSVC-SSERTPNGDVWAEKERPFGSVQCCLPSLRSCHSFGDRRKKASPAIAV 219

[Close]

BLAST of CmoCh11G016270 vs. ExPASy TrEMBL
Match: A0A6J1J5K2 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111481493 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 9.1e-72
Identity = 154/240 (64.17%), Postives = 171/240 (71.25%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHRNSDSA+KFRLS GSK N + IPPSPIKDN+  I G             GGV
Sbjct: 1   MGSCVSIHRNSDSAVKFRLSNGSKPNGLPIPPSPIKDNDTPIIGNPPIH--------GGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQ SPS             GW+            YS+    DFTPS+GNTPV  SFS
Sbjct: 61  FVKSQSSPSHFGSKDDAFFDSRGWLD----SDCEDDFYSV--NGDFTPSQGNTPVRTSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVHV+++ TPIA+P+PSPTGKKKLAELFRDSSR  ++IQ KPTLNELALQSNP
Sbjct: 121 SGTPRINQVHVVNDLTPIAMPKPSPTGKKKLAELFRDSSRNGTEIQTKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           E P++S TNSVCSS   ++ GDVW EKER  GSAQCCLPSLG  RSFGDRRKKA PAI V
Sbjct: 181 ETPYMSGTNSVCSSERTSNGGDVWIEKERRFGSAQCCLPSLGSRRSFGDRRKKASPAIAV 226

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: XP_022928326.1 (uncharacterized protein At3g27210-like [Cucurbita moschata])

HSP 1 Score: 407.5 bits (1046), Expect = 7.8e-110
Identity = 211/240 (87.92%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV
Sbjct: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHPSFS
Sbjct: 61  FVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHPSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV
Sbjct: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 234

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: KAG7022674.1 (hypothetical protein SDJN02_16408, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.0 bits (1003), Expect = 7.6e-105
Identity = 207/243 (85.19%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGE---GGV 60
           MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGE   GGV
Sbjct: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60

Query: 61  GGVFVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHP 120
           GGVFVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHP
Sbjct: 61  GGVFVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHP 120

Query: 121 SFSSGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQ 180
           SFSS TPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQ
Sbjct: 121 SFSSSTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQ 180

Query: 181 SNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPA 240
           SNPEK HVSRTNSVCSSS RTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKA PA
Sbjct: 181 SNPEKSHVSRTNSVCSSSGRTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKACPA 237

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: KAG6588909.1 (hypothetical protein SDJN03_17474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 385.2 bits (988), Expect = 4.2e-103
Identity = 202/240 (84.17%), Postives = 204/240 (85.00%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGG  G  G GGVGGV
Sbjct: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGVDGEGGVGGVGGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHPSFS
Sbjct: 61  FVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHPSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           S TPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP
Sbjct: 121 SSTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           EK HVSRTNSVCSSSERTSN DVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKA PAIVV
Sbjct: 181 EKSHVSRTNSVCSSSERTSNRDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKAHPAIVV 234

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: XP_022989721.1 (uncharacterized protein At3g27210-like [Cucurbita maxima])

HSP 1 Score: 370.9 bits (951), Expect = 8.1e-99
Identity = 197/240 (82.08%), Postives = 200/240 (83.33%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSI RNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALI+G        G GGVGGV
Sbjct: 1   MGSCVSIQRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALING--------GAGGVGGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHPSFS
Sbjct: 61  FVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHPSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           S TP INQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP
Sbjct: 121 SNTPWINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           EK HVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV
Sbjct: 181 EKSHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 226

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: XP_023530812.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.0 bits (946), Expect = 3.1e-98
Identity = 197/240 (82.08%), Postives = 199/240 (82.92%), Query Frame = 0


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISG        G GGVGGV
Sbjct: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISG--------GAGGVGGV 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           FVKSQRSPSQL           GW+            YS+    DFTPSRGNTPVHPSFS
Sbjct: 61  FVKSQRSPSQLGSKDEAFFDSRGWLD----SDCEDDFYSV--NGDFTPSRGNTPVHPSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVHVI NQTPIAV EPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHVIANQTPIAVSEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           EK HVSRTNSVCSSSE TSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKAR AIVV
Sbjct: 181 EKSHVSRTNSVCSSSESTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARSAIVV 226

[Close]

BLAST of CmoCh11G016270 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06
Identity = 45/131 (34.35%), Postives = 59/131 (45.04%), Query Frame = 0


Query: 105 DFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSP-TGKKKLAELFRDSSRKDS 164
           DFTPS GNTP   SFS   PR + +   + +       P+P   +KKL ELFRDS R++ 
Sbjct: 106 DFTPSLGNTP-KSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIREER 165

Query: 165 DIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGP 224
           +        E    S    P++S  N    S E         EK++       CLP    
Sbjct: 166 E--------ESGSSSAISTPYLSGAN----SREFNDTAIEKEEKKKSNWHHHRCLPGFSS 223

Query: 225 C-RSFGDRRKK 234
           C  SF +RRKK
Sbjct: 226 CGGSFMERRKK 223

[Close]

BLAST of CmoCh11G016270 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 0


Query: 100 IAMAADFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSPT-GKKKLAELFRDS 159
           +++  +FTPSRG TPVH  F   TP   +    +N+      E SPT  KK+L ELF+++
Sbjct: 83  MSVGGEFTPSRGTTPVHHKFCDQTPHQGE----ENKHGEEEEEASPTDNKKRLLELFKET 142

Query: 160 SRKDSDIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERT--SNGDVWTEKERPVGSAQC 219
             ++ + +      E  +     +  +     V SS+  T  +N     +K + V SA  
Sbjct: 143 QDEEDEEE------EDYVAEGKARACLWIRTPVRSSAPATPYNNNKERQQKFKRVRSAAL 202

Query: 220 --CLPSLGPCRSFGDRRK 233
             C+P L  C SF DRR+
Sbjct: 203 GRCVPRLVSCSSFTDRRR 210

[Close]

BLAST of CmoCh11G016270 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 0


Query: 100 IAMAADFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSPT-GKKKLAELFRDS 159
           +++  +FTPSRG TPVH  F   TP   +    +N+      E SPT  KK+L ELF+++
Sbjct: 19  MSVGGEFTPSRGTTPVHHKFCDQTPHQGE----ENKHGEEEEEASPTDNKKRLLELFKET 78

Query: 160 SRKDSDIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERT--SNGDVWTEKERPVGSAQC 219
             ++ + +      E  +     +  +     V SS+  T  +N     +K + V SA  
Sbjct: 79  QDEEDEEE------EDYVAEGKARACLWIRTPVRSSAPATPYNNNKERQQKFKRVRSAAL 138

Query: 220 --CLPSLGPCRSFGDRRK 233
             C+P L  C SF DRR+
Sbjct: 139 GRCVPRLVSCSSFTDRRR 146

The following BLAST results are available for this feature:

BLAST of CmoCh11G016270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LK32	4.2e-05	34.35	Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV...	[more]

BLAST of CmoCh11G016270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EK04	3.8e-110	87.92	uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1JKY5	3.9e-99	82.08	uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC1114867...	[more]
A0A0A0LB55	1.5e-74	64.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588480 PE=4 SV=1	[more]
A0A1S3BP47	5.7e-74	64.58	uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103491777 P...	[more]
A0A6J1J5K2	9.1e-72	64.17	uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC1114814...	[more]

BLAST of CmoCh11G016270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928326.1	7.8e-110	87.92	uncharacterized protein At3g27210-like [Cucurbita moschata]	[more]
KAG7022674.1	7.6e-105	85.19	hypothetical protein SDJN02_16408, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6588909.1	4.2e-103	84.17	hypothetical protein SDJN03_17474, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022989721.1	8.1e-99	82.08	uncharacterized protein At3g27210-like [Cucurbita maxima]	[more]
XP_023530812.1	3.1e-98	82.08	uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh11G016270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27210.1	3.0e-06	34.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G01860.1	1.1e-05	31.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT3G01860.2	1.1e-05	31.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..200
None	No IPR available	PANTHER	PTHR34280:SF13	SUBFAMILY NOT NAMED	coord: 103..240
None	No IPR available	PANTHER	PTHR34280:SF13	SUBFAMILY NOT NAMED	coord: 1..52
IPR038947	At3g27210-like	PANTHER	PTHR34280	OS01G0920100 PROTEIN	coord: 103..240 coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G016270.1	CmoCh11G016270.1	mRNA