CmoCh10G002060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G002060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CLAVATA3/ESR-RELATED
Location	Cmo_Chr10: 924449 .. 924739 (-)
RNA-Seq Expression	CmoCh10G002060
Synteny	CmoCh10G002060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCTTGTTTTGCAGGAAAGTTTTGTTCTTTCTGTTTCTTCTTGCTGGTTTTGTCTTCACTCTCCAGCCTCAAACCGCATCTGGGCTCGCCACCATTGATGTTGCTCTCAAATGGGTGGCCTTCAAATCCCCTGCTATCCACACCCACAAGGCTGATGATTCTGTGAAGAAGTTGAACATGAAGAACATGAACGTGGCTCCCTCTCCCACCATGAACTTCGACCCCAACCAATCCAACAAAAGAAGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATGCTAG

mRNA sequence

ATGGGTTTCTTGTTTTGCAGGAAAGTTTTGTTCTTTCTGTTTCTTCTTGCTGGTTTTGTCTTCACTCTCCAGCCTCAAACCGCATCTGGGCTCGCCACCATTGATGTTGCTCTCAAATGGGTGGCCTTCAAATCCCCTGCTATCCACACCCACAAGGCTGATGATTCTGTGAAGAAGTTGAACATGAAGAACATGAACGTGGCTCCCTCTCCCACCATGAACTTCGACCCCAACCAATCCAACAAAAGAAGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATGCTAG

Coding sequence (CDS)

ATGGGTTTCTTGTTTTGCAGGAAAGTTTTGTTCTTTCTGTTTCTTCTTGCTGGTTTTGTCTTCACTCTCCAGCCTCAAACCGCATCTGGGCTCGCCACCATTGATGTTGCTCTCAAATGGGTGGCCTTCAAATCCCCTGCTATCCACACCCACAAGGCTGATGATTCTGTGAAGAAGTTGAACATGAAGAACATGAACGTGGCTCCCTCTCCCACCATGAACTTCGACCCCAACCAATCCAACAAAAGAAGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATGCTAG

Protein sequence

MGFLFCRKVLFFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSVKKLNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC

Homology

[Close]

BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1  MGFLFCRKVLFFLFLLAGF---VFTLQPQ-TASGLATIDVALKWVAFKSP-AIHTHKADD 60
          MG LF RK L F+F++A F   V   QPQ TA+GL+TID ALKWVAFKS   I+THKAD 
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SVKKLNMKNMNV-APSPTMNFDPNQSNKRRVKKGSDPIHNR 96
          S    + KN+N+ APSP MNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 S----DEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97

[Close]

BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match: A0A067ENV6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
          F L +  GF+ +LQPQ  SGL +ID+ L+W     PA+   +   +V  K L M N ++A
Sbjct: 9  FILLVCIGFL-SLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68

Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MGFLFCRKVLFFLFLLAGFVFTLQPQTASGLATIDVALKW----VAFKSPAIHTHKADDS 60
          MGFL  R  +  LF+  GF+  LQP+  SGL ++D+AL+W    ++F   ++H  KA  +
Sbjct: 1  MGFLAYRSAV--LFVCIGFL-ALQPEKVSGLRSMDLALRWDKGHMSFLK-SLHLVKA-VA 60

Query: 61 VKKLNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          V+ L  K +++AP+P+M FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 61 VEDLQAK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1  MGFLFCRKVLFFLFLLAGFVFTLQPQTASGLATIDVALKW----VAFKSPAIHTHKADDS 60
          MGFL  R  +  LF+  GF+  LQP+  SGL ++D+AL+W    ++F   ++H  KA  +
Sbjct: 1  MGFLAYRSAV--LFVCIGFL-ALQPEKVSGLRSMDLALRWDKGHMSFLK-SLHLVKA-VA 60

Query: 61 VKKLNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          V+ L  K +++AP+P+M FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 61 VEDLQAK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match: V4VM13 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023845mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
          F L +  GF+ +LQPQ  SGL +ID  L+W     PA+   +   +V  K L M N ++A
Sbjct: 9  FILLVCIGFL-SLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68

Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CmoCh10G002060 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MGFLFCRKVLFFLFLLAGFVFT-LQPQTASGLATIDVALKWVAFKSPAIHTHKADDSVKK 60
          MGFLFCRKVLFFLFLLAGFVF+ LQPQTASGLATIDVALKWVAFKSPAIHTHKADDS KK
Sbjct: 1  MGFLFCRKVLFFLFLLAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKK 60

Query: 61 LNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          LNMKNMNVAPSP MNFDPNQSNKRRVKKGSDPIHNRC
Sbjct: 61 LNMKNMNVAPSPAMNFDPNQSNKRRVKKGSDPIHNRC 97

[Close]

BLAST of CmoCh10G002060 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 8  KVLFFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSVKKLNMKNMNV 67
          K L F  LLAG    +QPQTASGL TID+ALKWVAFKSP  +TH   DSVKKL MKNM++
Sbjct: 5  KALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHN-PDSVKKLKMKNMSL 64

Query: 68 APSPTMNFDPNQSNKRRVKKGSDPIHNR 96
          APSP M+FDPNQSNKR VKKGSDPIHNR
Sbjct: 65 APSPAMHFDPNQSNKRGVKKGSDPIHNR 91

[Close]

BLAST of CmoCh10G002060 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1  MGFLFCRKVLFFLFLLAGF---VFTLQPQ-TASGLATIDVALKWVAFKSP-AIHTHKADD 60
          MG LF RK L F+F++A F   V   QPQ TA+GL+TID ALKWVAFKS   I+THKAD 
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 SVKKLNMKNMNV-APSPTMNFDPNQSNKRRVKKGSDPIHNR 96
          S    + KN+N+ APSP MNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 S----DEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97

[Close]

BLAST of CmoCh10G002060 vs. NCBI nr
Match: KDO55565.1 (hypothetical protein CISIN_1g039594mg [Citrus sinensis])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
          F L +  GF+ +LQPQ  SGL +ID+ L+W     PA+   +   +V  K L M N ++A
Sbjct: 9  FILLVCIGFL-SLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68

Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CmoCh10G002060 vs. NCBI nr
Match: XP_006440599.1 (CLAVATA3/ESR (CLE)-related protein 45 [Citrus clementina] >ESR53839.1 hypothetical protein CICLE_v10023845mg [Citrus clementina])

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
          F L +  GF+ +LQPQ  SGL +ID  L+W     PA+   +   +V  K L M N ++A
Sbjct: 9  FILLVCIGFL-SLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68

Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
          P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94

The following BLAST results are available for this feature:

BLAST of CmoCh10G002060 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G002060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5	2.1e-19	66.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1	[more]
A0A067ENV6	7.2e-12	51.14	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1	[more]
M5WYZ5	1.2e-11	50.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	1.2e-11	50.00	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]
V4VM13	1.2e-11	51.14	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023845mg PE=4 ...	[more]

BLAST of CmoCh10G002060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589506.1	2.8e-42	95.88	hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6587538.1	1.2e-24	73.86	hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63668.1	4.3e-19	66.34	hypothetical protein Csa_014085 [Cucumis sativus]	[more]
KDO55565.1	1.5e-11	51.14	hypothetical protein CISIN_1g039594mg [Citrus sinensis]	[more]
XP_006440599.1	2.6e-11	51.14	CLAVATA3/ESR (CLE)-related protein 45 [Citrus clementina] >ESR53839.1 hypothetic...	[more]

BLAST of CmoCh10G002060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..96
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 1..96
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G002060.1	CmoCh10G002060.1	mRNA