|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGTAAATAATGTACTGACTCACACAGACACACGTGCCATTAAAGTGCGGCTTTTGGAGAAGTCTGAGCCTTAATTAATAACAACTTTCTCATTTTACAAATATGATAAATAATTTAGACATAGTTTTATTATTATTATTATTATTTTACTTAAAACATTTATTTATAAATATGTAAAAAGAAACTAGTTTTTGGTTGTTGTATAGATTTTTGAAGAAGCATGTTGAAGCCTTAAAAATCAATTAAGCAATTAATCAAAGCACACTCCAACCACCCAACTAAGGTTTCAAGTAACAAATAAAAATACAAAAAAAGAAAAAAATCCTACCATTTTAAAATTTTGAAATAGTAAAAATACTTTAATTTTTTTTTTTAAAAAAAAAGCAATAGAAAATAAAATTTTATGGATAATGAAAAATACGTAATAAAAAGTTATAATTGAAATTTATTATTTAAAAAAAAAAAAAAAAAAAAAAAGAGGAAGAATTGATCGAGAAATTGGCTGGATCCATTTAAGGTCGAGAAGGCTGGGCCATGTTTTCTGATTGAAGCTCTTAGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTGTTCACTTCCCGATGGCGATGGTTGAGGTTTCTGTTATGACGTCGAGCACGGGATCTGAGATTTTGATGTAGCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTTTCTCCTTCGAAATTTTTAGCAGCATTTTCGTATCGTTAGGTTTTTTATGGAGTCAATGATAGCCGGCGTGTGAGATTTCCGAATCTGTATTCTTTGGGGATTGAAAGATTCCCGGATCCCTACTTAGGTTTTGTGACCTAGCCTGGAATTCTTAGTCGACGTCTACGAGACGTCCTGTTTTTGTCTGGAAATGGAGGAAAAAGTTCATTTGAAGGAGATAAGGATTTGTAAATTTTTCTTTTTGCGGTTGCCAAGAGGGGATTGTGATCTGCCCTTGTCCATATCACATGCTTGACCAAATTAATGTTGAAATAGCCGTATCAATTTGTATCTATGGACCCTTTTAATTGGAGTAAGCGTCGATGTTGCAAGTTAAGTTCGTTGAATAAGCAGTATGAATGGCTGCACTAGTTAAATAAATAGTTGGAACGTTAGGCTATGAAAACACACATTTTGGGCTTTTTCCACTTTTTGAGACTGCCATCTATCCTTTTATTGTTTGCTTCGTCATTCAACTTTCTCCACTATGTGTTTGAATCAGGTTGGTCGGTAG mRNA sequence ATGGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTCGGTAG Coding sequence (CDS) ATGGCCTCTGGTGGTGGTGGTCAAGCACTCGTTTGCTTCGCTGTTCGAGTCTCACCCACTTCTTCAGCCTCTTCTTTGCTCCAATTCCGAATTTGTGATGCTTGTTTGACGATTTTTCATGCCTGGACGTGTTTCTCCGAATCGATCTATGTTCTTCTTCTGATCTGGAGGTTCTTGCTTTCTCAACGAGTCTCTGCATCCTTTTTCAGGGGGCATTGTGGACGGGCTGCTCTGAGTTTGAGCTATTTTGTGTTTTCGATCTGCCTGATCTCTGAACAGGTTGGTCGGTAG Protein sequence MASGGGGQALVCFAVRVSPTSSASSLLQFRICDACLTIFHAWTCFSESIYVLLLIWRFLLSQRVSASFFRGHCGRAALSLSYFVFSICLISEQVGR
Homology
BLAST of CmoCh04G008020.1 vs. NCBI nr
Match: KAG6577215.1 (Tubby-like F-box protein 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07 Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0
Query: 45 FSESIYVLLLIWRFLLSQRVSASFFRGHCGRAALSLSYFVFSICLISEQ 94
F +SI+ LLLI +FLLSQR SF RGHCGR LSLS FV SICLI EQ
Sbjct: 23 FLDSIHALLLIRKFLLSQRAPGSFLRGHCGRGVLSLSCFVLSICLIFEQ 71
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6577215.1 | 1.7e-07 | 69.39 | Tubby-like F-box protein 5, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmoCh04G008020.1:exon:4540 | CmoCh04G008020.1:exon:4540 | exon |
| CmoCh04G008020.1:exon:4541 | CmoCh04G008020.1:exon:4541 | exon |
| CmoCh04G008020.1:exon:4542 | CmoCh04G008020.1:exon:4542 | exon |
| CmoCh04G008020.1:exon:4543 | CmoCh04G008020.1:exon:4543 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmoCh04G008020.1:cds | CmoCh04G008020.1:cds | CDS |
| CmoCh04G008020.1:cds | CmoCh04G008020.1:cds_2 | CDS |
| CmoCh04G008020.1:cds | CmoCh04G008020.1:cds_3 | CDS |
| CmoCh04G008020.1:cds | CmoCh04G008020.1:cds_4 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmoCh04G008020.1 | CmoCh04G008020.1-protein | polypeptide |
|
