CmoCh02G008220 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G008220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	histone H4
Location	Cmo_Chr02: 5010884 .. 5013465 (+)
RNA-Seq Expression	CmoCh02G008220
Synteny	CmoCh02G008220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGAATCTAATCTCTTACTGTTCGTTCTCCTTAATCGTTCGTGAAAATGTCTGGACGCGGTAAGGGAGGCAAGGGCTTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGACAACATTCAGGGAATCACCAAGCCTGCTATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGGAGGACTTTGTATGGTTTCGGAGGTTAGGTTATGGCTTGATTTTAAGAATGATTGTATAGTATGTCTCAGAAATGCTACTTATCTTTGTTTCTGCGAGTTGTTTTGCGTTGGAGAAGACACTGGTTTATTGTCAAATTATGCTTCTTATGTACTGATCGTTTGTCTCTCTCCTTCATCTGTCTATCTGATTCGTCAACTAGAAAATTGAATCTGTAATCTGATCTTAAACGTCTCATCTTTTACAAGAAACTACAGATCGGTCTCGCCATCACACGTTTAATGTTTCCTTTACAATCGATAAATTTAAGGCATTATGGCGTTAAATATAATTGATGAAATTCGAATTGTTGAACGAATGAACCAGCTACATCACGAATTTTTTTGCAATGAGCAAGAACCGGTATTCTTAGGCAACTGGAAACTTTATCTCTGGAGGTATCTTGTTAGTTTTAGAAATTTTCAAATCCAATAAGTAACATCAATCCATTGCATTGTTTGAACGTGTATCTTCTGAATGTAAGAGATTCTTGATAATTGCAATGTATGCCAATACGGAAATTCAAGAATAATTGTAGCCTCATATTTTTATGGAGTTGTGAAAATACGATATTATTTAATCATGTTTGATATGAACTAAGATAACCCCGAACCGTTGTTTGGATTCATGTGAAGTTCATCGGATTGAATTGCTCTATTACCACCAGATGACTCTTTGTCCTTGACTCTCTAGTTAGATCAACTTCATATGCTCTAGGAATTTGCATGTGAACCTCCTGGAAAAAAACATCTCTTACAGAACTTTGTTGGCATCAAAGAAGAAACAATTTTTAGTTTCTTTGTTTCTGGCTGGTATGGATTTCAGGCATTATGCAATTCTGAGTTTAGAATTTGAAAAACTCCTGTTCATATCCAGTGATAGATGTACTTCATAAATTTTCTTATTTCATCACTGTTGAAGCATTTATTTTTCTTTTGATCATGTGTGTATGTAGTAATTTAGTTAACGATTTTGCAGGTTGACAAGCCTATGGAGTTCCGGTTACTATTCTTATGATGCGTTTTGAAACACTCCATTTTTATAGATCTGTTCGATCCAGAAGCTAGTAGCAACTTTGTTCAAACAACTTTGTTTAAAGTGATGTTTGTTCGATAAACACGACTCTCCACAATGGTATGTTATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGCTTATCATTTCTTAAATTAGCCGACGTGGGACTTTCATCCAACACTTCCCCTCGAACAAAGTATGCCTCCCCTTAGTTGAGGCTCGACTCTATTTCTTTTGGAGTCTTCGTCCTTTTTTTACTATGCCTTCGAGGAGTCTTGACTCCCTTTTCTTTTGGAATCCTTTGTTCGATATTTGAGGATTCTATTGACATGACTAAGTTTAGGGCACGACTCTGATACCAAGTTAAATGAACACGACTCTCCACAATAATATGATATTCTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTACCTCAAAAGGTCTCATTCCATAGAGATAGTATTCTTTGATTATAAACCCATGATCATTCCTTAAATTAGTAGACGTGGGATTTTCATCCAACAATGTTAAGCCATTGTCTCTTTCAAATGGTGTTGTATGTGTAAGAGCAGCGTACAGATGTTCAAATTTTCTCAACGGGAGTCGCTTCTCCTAGTTCGGGGTCGGGTATGACTCCTGAAGTTGATGTTTGTTGTGTATATATATTAAGTTGCTTCGTGGGTGCTTCTTGCTGCAAAGCAATTTGAAAGAATGTTATTCAGGATCCAATTTCTCTTAACCACAGTAGAAATGCTTTGATGCAGTTTGATAATTCATATTTTTCGTGCTTCAAGTTGAATATGCTAGAGATTTGTTAGAACTCAGAAGGTTCAGAAAGTCTACTTAACATTTTTGTAAGCGAGACCTTAAGGCTTTGCAGGTTTTTTGCTAATCATCATTGAAGTGGGTATAGAGGTGGGATTCTCTCAAGCGGTCAAGGGCATGCGTGCAGGTCTGTGATCTTTAACTTCTTGATTTATTGCCATCATCTGTTCCTGATTTTCATCTCAACTTAGTCCAATTTAGTTTTTGTTAGAGAACTTATCTAGATCCTATCCTCAATTGGACATGGCTCATGGCTCAGAAAAGGACTTAGACCATCTAGGAACCGGCACCAGCCTGCCCAAAACGGAACCGCTGGAAATACTCATTTGA

mRNA sequence

TTTCGAATCTAATCTCTTACTGTTCGTTCTCCTTAATCGTTCGTGAAAATGTCTGGACGCGGTAAGGGAGGCAAGGGCTTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGACAACATTCAGGGAATCACCAAGCCTGCTATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGGAGGACTTTGTATGGTTTCGGAGGTTTTTTGCTAATCATCATTGAAGTGGGTATAGAGGTGGGATTCTCTCAAGCGGTCAAGGGCATGCGTGCAGAGAACTTATCTAGATCCTATCCTCAATTGGACATGGCTCATGGCTCAGAAAAGGACTTAGACCATCTAGGAACCGGCACCAGCCTGCCCAAAACGGAACCGCTGGAAATACTCATTTGA

Coding sequence (CDS)

ATGTCTGGACGCGGTAAGGGAGGCAAGGGCTTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTGAGAGACAACATTCAGGGAATCACCAAGCCTGCTATTCGCCGTTTGGCTCGTAGAGGTGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATCTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGGAGGACTTTGTATGGTTTCGGAGGTTTTTTGCTAATCATCATTGAAGTGGGTATAGAGGTGGGATTCTCTCAAGCGGTCAAGGGCATGCGTGCAGAGAACTTATCTAGATCCTATCCTCAATTGGACATGGCTCATGGCTCAGAAAAGGACTTAGACCATCTAGGAACCGGCACCAGCCTGCCCAAAACGGAACCGCTGGAAATACTCATTTGA

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQAVKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTEPLEILI

Homology

[Close]

BLAST of CmoCh02G008220 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. ExPASy TrEMBL
Match: A0A075AEX9 (Histone H4 OS=Opisthorchis viverrini OX=6198 GN=T265_05709 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.0e-49
Identity = 113/164 (68.90%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQA 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG F         +  FS+ 
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGVF---------DAKFSRV 120

Query: 121 VKGMRAENLSRS-----YPQLDMAHGSEKDLDHLGTGTSLPKTE 160
            +    + + RS     YP  D +H  ++    L   ++ P+TE
Sbjct: 121 TRHNLVDLIVRSKGRVVYPWPDGSHAHKRSPRALAENSNTPRTE 155

[Close]

BLAST of CmoCh02G008220 vs. ExPASy TrEMBL
Match: A0A5N5MRH8 (Histone H4 OS=Salix brachista OX=2182728 GN=DKX38_007710 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.4e-49
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQ 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG +L+ +   ++   S+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGLVLLALGASVKESTSE 119

[Close]

BLAST of CmoCh02G008220 vs. ExPASy TrEMBL
Match: A0A498L9T6 (Histone H4 OS=Labeo rohita OX=84645 GN=ROHU_033702 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.4e-49
Identity = 111/159 (69.81%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQA 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG  L           SQ 
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGKELSATSEEKHFPDSQQ 120

Query: 121 VKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTE 160
              + + +  R  P+ +   GS +D D L     +  ++
Sbjct: 121 DSNVDSTSSLRENPETEEKQGSGEDSDVLSINAEIDDSD 159

[Close]

BLAST of CmoCh02G008220 vs. ExPASy TrEMBL
Match: A0A5N5L9S0 (Histone H4 OS=Salix brachista OX=2182728 GN=DKX38_016419 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.5e-49
Identity = 108/124 (87.10%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFL----LIIIEVGIEVG 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG +      ++  GIE G
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGLIKEMGCAMLSAGIEKG 120

[Close]

BLAST of CmoCh02G008220 vs. ExPASy TrEMBL
Match: A0A6J3B9V3 (Histone H4 OS=Vicugna pacos OX=30538 GN=LOC107035021 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 114/157 (72.61%), Postives = 127/157 (80.89%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQA 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG+      V  ++  ++A
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGW-----SVRSDLA-TEA 120

Query: 121 VKGMRAENLSRSYPQLDMAHGSEK-DLDHLGTGTSLP 157
           V+G      S +   +D  HG ++  L  LG G  +P
Sbjct: 121 VEG-----ASLALESVDHVHGRDRLALGVLGVGDRVP 146

[Close]

BLAST of CmoCh02G008220 vs. NCBI nr
Match: XP_009169046.1 (hypothetical protein T265_05709 [Opisthorchis viverrini] >KER27174.1 hypothetical protein T265_05709 [Opisthorchis viverrini])

HSP 1 Score: 205.3 bits (521), Expect = 4.1e-49
Identity = 113/164 (68.90%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQA 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG F         +  FS+ 
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGVF---------DAKFSRV 120

Query: 121 VKGMRAENLSRS-----YPQLDMAHGSEKDLDHLGTGTSLPKTE 160
            +    + + RS     YP  D +H  ++    L   ++ P+TE
Sbjct: 121 TRHNLVDLIVRSKGRVVYPWPDGSHAHKRSPRALAENSNTPRTE 155

[Close]

BLAST of CmoCh02G008220 vs. NCBI nr
Match: KAB5556801.1 (hypothetical protein DKX38_007710 [Salix brachista])

HSP 1 Score: 204.1 bits (518), Expect = 9.0e-49
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQ 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG +L+ +   ++   S+
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGLVLLALGASVKESTSE 119

[Close]

BLAST of CmoCh02G008220 vs. NCBI nr
Match: RXN04959.1 (histone H4-like protein [Labeo rohita])

HSP 1 Score: 204.1 bits (518), Expect = 9.0e-49
Identity = 111/159 (69.81%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQA 120
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG  L           SQ 
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGKELSATSEEKHFPDSQQ 120

Query: 121 VKGMRAENLSRSYPQLDMAHGSEKDLDHLGTGTSLPKTE 160
              + + +  R  P+ +   GS +D D L     +  ++
Sbjct: 121 DSNVDSTSSLRENPETEEKQGSGEDSDVLSINAEIDDSD 159

[Close]

BLAST of CmoCh02G008220 vs. NCBI nr
Match: KAE8646972.1 (hypothetical protein Csa_021021 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-48
Identity = 109/126 (86.51%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFLLIIIEVGIEVGFSQA 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG F L  I+     G S  
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVFFLFKID-----GGSAV 120

Query: 121 VKGMRA 127
           +KG+++
Sbjct: 121 LKGLKS 121

[Close]

BLAST of CmoCh02G008220 vs. NCBI nr
Match: KAB5538886.1 (hypothetical protein DKX38_016419 [Salix brachista])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 108/124 (87.10%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFL----LIIIEVGIEVG 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG +      ++  GIE G
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGLIKEMGCAMLSAGIEKG 120

[Close]

BLAST of CmoCh02G008220 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CmoCh02G008220 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 104
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of CmoCh02G008220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	2.2e-50	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	2.2e-50	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	2.2e-50	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	2.2e-50	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	2.2e-50	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of CmoCh02G008220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A075AEX9	2.0e-49	68.90	Histone H4 OS=Opisthorchis viverrini OX=6198 GN=T265_05709 PE=3 SV=1	[more]
A0A5N5MRH8	4.4e-49	88.24	Histone H4 OS=Salix brachista OX=2182728 GN=DKX38_007710 PE=3 SV=1	[more]
A0A498L9T6	4.4e-49	69.81	Histone H4 OS=Labeo rohita OX=84645 GN=ROHU_033702 PE=3 SV=1	[more]
A0A5N5L9S0	7.5e-49	87.10	Histone H4 OS=Salix brachista OX=2182728 GN=DKX38_016419 PE=3 SV=1	[more]
A0A6J3B9V3	1.3e-48	72.61	Histone H4 OS=Vicugna pacos OX=30538 GN=LOC107035021 PE=3 SV=1	[more]

BLAST of CmoCh02G008220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_009169046.1	4.1e-49	68.90	hypothetical protein T265_05709 [Opisthorchis viverrini] >KER27174.1 hypothetica...	[more]
KAB5556801.1	9.0e-49	88.24	hypothetical protein DKX38_007710 [Salix brachista]	[more]
RXN04959.1	9.0e-49	69.81	histone H4-like protein [Labeo rohita]	[more]
KAE8646972.1	1.2e-48	86.51	hypothetical protein Csa_021021 [Cucumis sativus]	[more]
KAB5538886.1	1.5e-48	87.10	hypothetical protein DKX38_016419 [Salix brachista]	[more]

BLAST of CmoCh02G008220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	1.6e-51	100.00	Histone superfamily protein	[more]
AT1G07820.1	1.6e-51	100.00	Histone superfamily protein	[more]
AT1G07820.2	1.6e-51	100.00	Histone superfamily protein	[more]
AT2G28740.1	1.6e-51	100.00	histone H4	[more]
AT3G45930.1	1.6e-51	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 89..100 score: 97.79 coord: 77..89 score: 90.05 coord: 62..76 score: 95.1 coord: 20..39 score: 93.38 coord: 5..16 score: 95.59 coord: 40..60 score: 93.56
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..101 e-value: 5.37532E-49 score: 151.114
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 38..96 e-value: 6.2E-8 score: 32.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..103 e-value: 2.8E-58 score: 196.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..102
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 1..103
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..103
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G008220.1	CmoCh02G008220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090114	COPII-coated vesicle budding
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0030127	COPII vesicle coat
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046982	protein heterodimerization activity