CmoCh01G002210.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh01G002210.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr01: 971586 .. 974442 (-)
Sequence length	252
RNA-Seq Expression	CmoCh01G002210.1
Synteny	CmoCh01G002210.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATATCAAGGTGAGTTAAGATGAGTTGAACAACCCATGCTTATCAACAAAGCAAAACAAAACAATTTCAAACAAACCCATTCATTGTGATTTAATCATAATCTATAACCCTTAACTAATGTAATATTAGTAATTTTTCAAAAAAAAAAAAAAAACATAATCATATGCTATTGGTTACTTGTTCTAACCTAGCTAACTAGTTAGTCGTGAAAAATTCGGATATCACGGACAATGTCGGCGTATGCTCAGTGTCACAACCATACTATGAAGAGAGTAGGTTGTGACCCTCACGCCATGACAAGCAAAGCGGCGTCCCTCATGAGGCGCCCATCCGCCCATATGCGGGCCAATATAGAAGAGTGCCATTATGCGATCGTGGAGGACGATGCATCATCCAACACACTACCACGCAAAGTGGGCATTGAAGACATGTTGAGACCTAAACACACCAACACACCACCACTCGGGTCTCGAGTCACGTTTGAGATAAATGTTTTAGATATCACGTAACTTTAGGGTAGGGAGAATTTGATCGTATAACTCTGAAAGCTTGATCAACCCAACTTTATCTATATGGTTGAGTTGGGTTCATTACTTTCTTAGAATTGTTTAGGTTAAAAAAATTTACAATTCGAACAATTAGGTTCGGTCTAAAGAAACTTCGACTGGACCTAACTAAAATTTAAGATTACGCAACCGATTTTATATATTATATTTTTTAAAATGGTGACTCATATAAAAATAATATGGACATAAAAAAGCTTTTAAAAATAGAAGGAAAAAAATAAAATAGAGGCAATAATATAAAAATAATGGGTGTGACATTTAGACCCCTTATGCATGATTGATGTTTGTAAGATTCAATGATTAAAAATAATTTCAAACATTATCCATTAAATCTTTGATGTGTAGCAAAAGAAACTCAACATTTTTGAATGTCTATAAATGTAAGCTAAGATCTTGGCCACATCACATGCAAATCCATTGAAACAATAAAAACACAATAATTTTGAAAGTTTTTAAATGTTTTTGAGCCACAAAATATTTATCAACTGGATCTTAGATCAGAAACGGTTATGATGGGTTTCGGGTTCCCATGTGATGTCTATAAAGTCGTTTTTTGACCAATTTTAGTTAACATAATACGTTATAAATACGATCGGTTAATGCATCTTAAGCTGTATATTGTTTTGCTAGGGTGACTGTATTCTCTTCACCAATCATTATCATATAGTTGGTTTTGTTAAAACTAATGATCGAAATGTGATATGGTTTGTGATTTAAAGAGAAATGTGACGAAATGATTGCTCGAGGACGGGCGTATGAAAAGGAAAGACTTAATTTTTTTTTTTGTGAGGGAAAAAACAGAAAATAATGCTATGAATTTGGGAAGCAAAGAAGAGGAAGGACCATGTTTGTATCATGTGAGGATTGTCCCCTTTGCCATGTGCATTAATTTTCCTCAATTTTTCCCCAATTTCTCACCTATTTTTCCCCTTCTCACTTTTAAATGGTGGAAAAAAAAAACTGTTTATTATTATTTTGTGGGTTAAGAAATATATCGTTAGAGTCGAAACCTTATAGAGGATAATATCTATTAGTGGTGGACTTAGACTATTATAAATGACATCAGAGACAGACACTGGGTGATGTGCTAGTGAGGACGTGAACCCTAAAGGGAGATGAACACTGGACAGTGTGCTAGTGAGAACGTTAGGCCCCAAAGGGGGTGGACATTGAATAGTGTGCCAACGAGGATGTTGGGTTCGAAAGAGTCACGTGTGAATTATAAAAAACAACCCCAACTATAAAAAAAAAAAAAAAAAGGAAAACAAATTATGAAATCAAATAGAGGTAAGAATAATTGGGCCAGAAGATTAAAGAAACTTGGCCCAAAAGTTTCATCTTCGTCTTCTGGGGATAGGCCCACAAATGAATGGATTGGGCCTTTGTTACAAACACTGAAATTTACAACTTCACAATGACAAAAACAAATTATAACTAATAGATTCAAAGTAATTTCTAATAATATAAGGATTTAGTCAATACAGAATTTACAATTTGACCTAAAAATATGAAGTTGGGATGGAAAGATGATCACAAATATGACTATTTTCTTCACCAAGTCTATCTGTTAAACGTCAAATGGCGCAAACTTGATTGAAGCCGTCTTTTGGTGATGAACTTTTTCTTCCTAAAAAAGGGTTCATGAGATGATCCAACGAAATCTTTGTCCGTATTTGCCACCATTGTACCCAACATTCAATCTATATATAAGCATTCAACAATCTTCAGAGAGGGTCTTCCTTCCATCCTTCACACTCTCTTTTTCCTCTCTCTCTCTCTCTTCATTTTTCTGGATCCACAAGCACTCTCAGATCTCAATCGCCGCCCTTCTCCTCCGTCTTAAATTCCATTGGATTCTGATCCACTTCCCCAATTCGCCTCTACAAGGTAAGTTTCCCCAACCCCACTTGTTATTTCATAGTTCTGTTGATTACAGATTGTTATATTTGCTTGTTTTCCATGTAATCGAATTGGGTTGTTGTTGTTTGTTCATTTCTTCTCATTTTGGTTACGTGCTGCTCTCCCAGATCGTGGGGCTTTGTTGTATTGTCTGAATTGGACTTGTGTAGTGTTATCTTTAGATTGGGTTGTGAGTTTTTGTTTTGTAGCTTACGATCCATTAGTAATGGCATTGGTATTTGTTAATTAGTATTGGATCTGCTTTATATGAGTGAATATGAATGAGGATTGGGATTTGGGATTGAGGGTTTAGGGTTTATGAATGTTCTTGTTGTTGTTCACTTCAGAAGGGTGCCTATATGCGTTTAATCATTTTAAATCTGTGA

mRNA sequence

ATGGTTGATATCAAGATTGTTATATTTGCTTGTTTTCCATGTAATCGAATTGGGTTGTTGTTGTTTGTTCATTTCTTCTCATTTTGGTTACGTGCTGCTCTCCCAGATCGTGGGGCTTTGTTGTATTGTCTGAATTGGACTTGTGTAGTGTTATCTTTAGATTGGGTTGTGAGTTTTTGTTTTGTAGCTTACGATCCATTAGTAATGGCATTGAAGGGTGCCTATATGCGTTTAATCATTTTAAATCTGTGA

Coding sequence (CDS)

ATGGTTGATATCAAGATTGTTATATTTGCTTGTTTTCCATGTAATCGAATTGGGTTGTTGTTGTTTGTTCATTTCTTCTCATTTTGGTTACGTGCTGCTCTCCCAGATCGTGGGGCTTTGTTGTATTGTCTGAATTGGACTTGTGTAGTGTTATCTTTAGATTGGGTTGTGAGTTTTTGTTTTGTAGCTTACGATCCATTAGTAATGGCATTGAAGGGTGCCTATATGCGTTTAATCATTTTAAATCTGTGA

Protein sequence

MVDIKIVIFACFPCNRIGLLLFVHFFSFWLRAALPDRGALLYCLNWTCVVLSLDWVVSFCFVAYDPLVMALKGAYMRLIILNL

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh01G002210.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002210.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002210.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh01G002210.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G002210	CmoCh01G002210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002210.1:exon:2441	CmoCh01G002210.1:exon:2441	exon
CmoCh01G002210.1:exon:2442	CmoCh01G002210.1:exon:2442	exon
CmoCh01G002210.1:exon:2443	CmoCh01G002210.1:exon:2443	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002210.1:cds	CmoCh01G002210.1:cds_3	CDS
CmoCh01G002210.1:cds	CmoCh01G002210.1:cds_2	CDS
CmoCh01G002210.1:cds	CmoCh01G002210.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G002210.1	CmoCh01G002210.1-protein	polypeptide