Cmc12g0322041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc12g0322041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr12: 9433811 .. 9434617 (+)
RNA-Seq Expression	Cmc12g0322041
Synteny	Cmc12g0322041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGTTTGACTAATGCTCCTACGGTATTCATGGTCTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGATTACTTCTTGATTTACTCCAAGACTGAGGTTGAGCATGAGAAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGATTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATGGATCCAGCAAAGATCGAAACGGTTACCAATTGGCCTCGACCATCTACAGTTAGAGAGATTCGTAGTTTCCTTTGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCCTTGACCCAGTTGACCACGAAGGGAACCCCTTTTGTTTGGAGCCCAACTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTAGTAACTGCACCAGTCCTGACAGTCCCCGATGGGTCGGACAGTTTTGTGATCTACAGTGATGCCTCCAAAAAGGGACTGGGCTGTGTGTTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTAGAGTTGGCAGCAGTGGTCTTTGCACTGAAGATATGGAGGCACTATCTGTATGGTGAGAAGATACAGATCTTCACTGATCATAAGAGCTTGAAGTACTTCTTCACCCAGAATGAGCTAAACATGAGGCAGAGAAGGTGGCTTGAGTTAGTGAAACTGTGA

mRNA sequence

ATGTCTTTTGGTTTGACTAATGCTCCTACGGTATTCATGGTCTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGATTACTTCTTGATTTACTCCAAGACTGAGGTTGAGCATGAGAAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGATTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATGGATCCAGCAAAGATCGAAACGGTTACCAATTGGCCTCGACCATCTACAGTTAGAGAGATTCGTAGTTTCCTTTGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCCTTGACCCAGTTGACCACGAAGGGAACCCCTTTTGTTTGGAGCCCAACTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTAGTAACTGCACCAGTCCTGACAGTCCCCGATGGGTCGGACAGTTTTGTGATCTACAGTGATGCCTCCAAAAAGGGACTGGGCTGTGTGTTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTAGAGTTGGCAGCAGTGGTCTTTGCACTGAAGATATGGAGGCACTATCTGTATGGTGAGAAGATACAGATCTTCACTGATCATAAGAGCTTGAAGTACTTCTTCACCCAGAATGAGCTAAACATGAGGCAGAGAAGGTGGCTTGAGTTAGTGAAACTGTGA

Coding sequence (CDS)

ATGTCTTTTGGTTTGACTAATGCTCCTACGGTATTCATGGTCTTGATGAACAAGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTTTTCATTGATTACTTCTTGATTTACTCCAAGACTGAGGTTGAGCATGAGAAGCACTTGCACCAAGTTTTGGAGACTCTTCGAGCCAATAGATTGTATGCCAAGTTCTCCAAGTGCGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATGGATCCAGCAAAGATCGAAACGGTTACCAATTGGCCTCGACCATCTACAGTTAGAGAGATTCGTAGTTTCCTTTGTTTGGCAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCCTTGACCCAGTTGACCACGAAGGGAACCCCTTTTGTTTGGAGCCCAACTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAAGCTAGTAACTGCACCAGTCCTGACAGTCCCCGATGGGTCGGACAGTTTTGTGATCTACAGTGATGCCTCCAAAAAGGGACTGGGCTGTGTGTTGATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACGACTTAGAGTTGGCAGCAGTGGTCTTTGCACTGAAGATATGGAGGCACTATCTGTATGGTGAGAAGATACAGATCTTCACTGATCATAAGAGCTTGAAGTACTTCTTCACCCAGAATGAGCTAAACATGAGGCAGAGAAGGTGGCTTGAGTTAGTGAAACTGTGA

Protein sequence

MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQNELNMRQRRWLELVKL

Homology

[Close]

BLAST of Cmc12g0322041 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.0 bits (1281), Expect = 4.9e-137
Identity = 247/267 (92.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIF
Sbjct: 853 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 913 TDHKSLKYFFTQKELNMRQRRWLELVK 939

[Close]

BLAST of Cmc12g0322041 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 498.0 bits (1281), Expect = 4.9e-137
Identity = 247/267 (92.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIF
Sbjct: 853 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 913 TDHKSLKYFFTQKELNMRQRRWLELVK 939

[Close]

BLAST of Cmc12g0322041 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.4e-137
Identity = 246/267 (92.13%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVK 787

[Close]

BLAST of Cmc12g0322041 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 497.3 bits (1279), Expect = 8.4e-137
Identity = 246/267 (92.13%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSD
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 861

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 862 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 921

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 922 TDHKSLKYFFTQKELNMRQRRWLELVK 948

[Close]

BLAST of Cmc12g0322041 vs. NCBI nr
Match: KAA0039594.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 496.9 bits (1278), Expect = 1.1e-136
Identity = 247/267 (92.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAPTVFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 600 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWLKKV+FLGHVVSSEGVS++PAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 660 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIAS LTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS SFVIY+D
Sbjct: 720 RFVEDFSRIASLLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYND 779

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 780 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 839

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 840 TDHKSLKYFFTQKELNMRQRRWLELVK 866

[Close]

BLAST of Cmc12g0322041 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.1e-49
Identity = 100/263 (38.02%), Postives = 155/263 (58.94%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           M FGL NAP  F   MN + +  L+   +V++D  +++S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           L  +  KCEF  ++ +FLGHV++ +G+  +P KIE +  +P P+  +EI++FL L GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTTKGTPF-VWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYS 180
           +F+ +F+ IA P+T+   K       +P  +S+F++LK  +   P+L VPD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI 240
           DAS   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 FTDHKSLKYFFTQNELNMRQRRW 263
            +DH+ L + +   + N +  RW
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRW 596

[Close]

BLAST of Cmc12g0322041 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.9e-46
Identity = 95/263 (36.12%), Postives = 149/263 (56.65%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           M FGL NAP  F   MN + +  L+   +V++D  +I+S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           L  +  KCEF  K+ +FLGH+V+ +G+  +P K++ + ++P P+  +EIR+FL L GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTTKGTPF-VWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYS 180
           +F+ +++ IA P+T    K T           +F++LK  ++  P+L +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI 240
           DAS   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 FTDHKSLKYFFTQNELNMRQRRW 263
            +DH+ L++     E   +  RW
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERW 595

[Close]

BLAST of Cmc12g0322041 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 4.3e-43
Identity = 96/275 (34.91%), Postives = 155/275 (56.36%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           + FGL NA ++F   ++ V ++ +     V++D  +I+S+ E +H +H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           +     K  F+ + V +LG +VS +G   DP K++ +  +P P  V ++RSFL LA YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLTQL-----------TTKGTPFVWSPTCESSFQELKQKLVTAPV-LTV 180
            F++DF+ IA P+T +            +K  P  ++ T  ++FQ L+  L +  V L  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDGSDSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIW 240
           PD    F + +DAS  G+G VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

Query: 241 RHYLYGEK-IQIFTDHKSLKYFFTQNELNMRQRRW 263
           +++LYG + I IFTDH+ L +       N + +RW
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583

[Close]

BLAST of Cmc12g0322041 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-40
Identity = 88/278 (31.65%), Postives = 153/278 (55.04%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           + FGL NAP +F  +++ + ++ +     V+ID  +++S+    H K+L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           L     K  F   +V FLG++V+++G+  DP K+  ++  P P++V+E++ FL +  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLT-----------TKGTPFVWSPTCESSFQELKQKLVTAPVLTVP 180
           +F++D++++A PLT LT           +   P     T   SF +LK  L ++ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGSDSFVIYSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFAL 240
             +  F + +DAS   +G VL Q    + + +AY SR L   E+NY T + E+ A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

Query: 241 KIWRHYLYGE-KIQIFTDHKSLKYFFTQNELNMRQRRW 263
              R YLYG   I+++TDH+ L +       N + +RW
Sbjct: 490 DNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRW 527

[Close]

BLAST of Cmc12g0322041 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-38
Identity = 94/270 (34.81%), Postives = 150/270 (55.56%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
            M FGL NAP+ F   M   F+D    FV V++D  LI+S++  EH KHL  VLE L+   
Sbjct: 744  MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 803

Query: 61   LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
            L  K  KC+F  ++  FLG+ +  + ++    K   + ++P P TV++ + FL +  YYR
Sbjct: 804  LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYR 863

Query: 121  RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
            RF+ + S+IA P+       +   W+   + + ++LK  L  +PVL   +   ++ + +D
Sbjct: 864  RFIPNCSKIAQPIQLFICDKSQ--WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTD 923

Query: 181  ASKKGLGCVLMQQGK------VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG 240
            ASK G+G VL +         VV Y S+ L+S ++NYP  +LEL  ++ AL  +R+ L+G
Sbjct: 924  ASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHG 983

Query: 241  EKIQIFTDHKSLKYFFTQNELNMRQRRWLE 265
            +   + TDH SL     +NE   R +RWL+
Sbjct: 984  KHFTLRTDHISLLSLQNKNEPARRVQRWLD 1009

[Close]

BLAST of Cmc12g0322041 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.4e-137
Identity = 247/267 (92.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIF
Sbjct: 853 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 913 TDHKSLKYFFTQKELNMRQRRWLELVK 939

[Close]

BLAST of Cmc12g0322041 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.4e-137
Identity = 247/267 (92.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT +GTPFVWSPTCESSFQ+LKQKLVTAPVLTVPDGS SFVIYSD
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGSGSFVIYSD 852

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLY EKIQIF
Sbjct: 853 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYDEKIQIF 912

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 913 TDHKSLKYFFTQKELNMRQRRWLELVK 939

[Close]

BLAST of Cmc12g0322041 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.1e-137
Identity = 246/267 (92.13%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVK 787

[Close]

BLAST of Cmc12g0322041 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 497.3 bits (1279), Expect = 4.1e-137
Identity = 246/267 (92.13%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAP VFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWL+KV+FLGHVVSSEGVS+DPAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIASPLTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS +FVIYSD
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 861

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLK HEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 862 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 921

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 922 TDHKSLKYFFTQKELNMRQRRWLELVK 948

[Close]

BLAST of Cmc12g0322041 vs. ExPASy TrEMBL
Match: A0A5A7T804 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00700 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.3e-137
Identity = 247/267 (92.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMVLMNKVFKDFLDSFVIVFIDYFLIYSKTEVEHEKHLHQVLETLRANR 60
           MSFGLTNAPTVFM LMN+VFKDFLDSFVIVFID  LIYSKTE EHE+HLHQVLETLRAN+
Sbjct: 600 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCEFWLKKVSFLGHVVSSEGVSMDPAKIETVTNWPRPSTVREIRSFLCLAGYYR 120
           LYAKFSKCEFWLKKV+FLGHVVSSEGVS++PAKIE VTNWPRPSTV EIRSFL LAGYYR
Sbjct: 660 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVNPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPVLTVPDGSDSFVIYSD 180
           RFVEDFSRIAS LTQLT KGTPFVWSP CESSFQELKQKLVTAPVLTVPDGS SFVIY+D
Sbjct: 720 RFVEDFSRIASLLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGSFVIYND 779

Query: 181 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 780 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 839

Query: 241 TDHKSLKYFFTQNELNMRQRRWLELVK 268
           TDHKSLKYFFTQ ELNMRQRRWLELVK
Sbjct: 840 TDHKSLKYFFTQKELNMRQRRWLELVK 866

[Close]

BLAST of Cmc12g0322041 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-25
Identity = 55/131 (41.98%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 48  HLHQVLETLRANRLYAKFSKCEFWLKKVSFLG--HVVSSEGVSMDPAKIETVTNWPRPST 107
           HL  VL+    ++ YA   KC F   ++++LG  H++S EGVS DPAK+E +  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VREIRSFLCLAGYYRRFVEDFSRIASPLTQLTTKGTPFVWSPTCESSFQELKQKLVTAPV 167
             E+R FL L GYYRRFV+++ +I  PLT+L  K +   W+     +F+ LK  + T PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LTVPDGSDSFV 177
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc12g0322041 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051719.1	4.9e-137	92.51	pol protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	4.9e-137	92.51	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	8.4e-137	92.13	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	8.4e-137	92.13	pol protein [Cucumis melo var. makuwa]	[more]
KAA0039594.1	1.1e-136	92.51	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc12g0322041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.1e-49	38.02	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.9e-46	36.12	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	4.3e-43	34.91	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
Q8I7P9	1.2e-40	31.65	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	2.4e-38	34.81	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc12g0322041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UE01	2.4e-137	92.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5D3BSV9	2.4e-137	92.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5A7VMR4	4.1e-137	92.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UHL7	4.1e-137	92.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7T804	5.3e-137	92.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]

BLAST of Cmc12g0322041 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.4e-25	41.98	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 172..265 e-value: 5.0E-34 score: 116.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 1.8E-13 score: 50.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 3.1E-30 score: 106.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..182 e-value: 2.7E-31 score: 109.4
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 93..265
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 93..265
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 6.48569E-36 score: 124.245
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 176..265 e-value: 7.95657E-46 score: 148.024
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc12g0322041.1	Cmc12g0322041.1	mRNA