Cmc07g0205141 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc07g0205141
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	UDP-glucuronic acid decarboxylase 1
Location	CMiso1.1chr07: 26129789 .. 26130777 (+)
RNA-Seq Expression	Cmc07g0205141
Synteny	Cmc07g0205141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGTCAGCAAAAACCTTGCTCCAACTCTCTTCGCTAATCCCAACATGTTCAAAGTTCCGACCACATTGGTCTTGTGAAATTCCGGAGTCAAAGAAAAACAAAACCCAATACTCGAATTCAAGATAAAAATAAAACCAGAGTTGAAGTATTGAAAATTTGAAGAATTAAAAGGATATGATTGTCTTGACAGGGTTGAATTTGTAATGAACAGGGGAAGCAGGGCAAGCCAAATGGTAGATCTGGTCTACTTCAAGAAGAAGCGGTTCAACAACATCGTGTCGAATCAATTCAAATCTCGGGTTCCCGAAATGATGCATCACGTTTTCTTTCCGTCCGGTGAAGAAATTATCCACCACGATCACGCTGTCGCCTCTCTCGATCAAACGGTCCACAAGATGCGACCCGACGAACCCAGCCCCGCCGGTCACCACGATCCGGAGGCCTTTCCGCTTCAGCCCAAGTGGGATCTTGCCGCCGGAGTTCATTACACGGTGGACTTGGAAGCCGGCTCGGTGTTCGTACGACGGCGTATTGGACCACCGGGCAAGTTCAGTGGGGATCGGGTCGTATCCGACCCGGGAAGGATAATTGGAAGAGGGTAAGAGGGCGAAAACGAAAGTGGCGATGGCAATGCCGACGAGGACGAAAAGGAGGCGCTGTTCACGGAGCATGTAGCGAATCGGACGGGTGACGGACAGCCATGGTTTTGGGGGTTTTGGGGAATATGCGTCCGCCGCCGGTTGGGTCTCGTCGTGTCCTCTGAATATTAACTCCGATCCCATTTTTGGACTTCAAATTCGATCGGAACAGAACAGGGTTTAGAGGTCTTCTTTTATCTTTTCCTGCGCCGGCGACGGCGGAGGCAGGATGGCCGGGAATTGGGGGCCACGAGCGGCGGAGGCGAGGAGAGGAGAGGGGACTTTTTTTTGTTTACCGATGGGGGAAAGGGCCGATTTAGGAGGGTCTTAAAGGGAGAGAGGGTAGAGAA

mRNA sequence

CTGGTCAGCAAAAACCTTGCTCCAACTCTCTTCGCTAATCCCAACATGTTCAAAGTTCCGACCACATTGGTCTTGGGAAGCAGGGCAAGCCAAATGGTAGATCTGGTCTACTTCAAGAAGAAGCGGTTCAACAACATCGTGTCGAATCAATTCAAATCTCGGGTTCCCGAAATGATGCATCACGTTTTCTTTCCGTCCGGTGAAGAAATTATCCACCACGATCACGCTGTCGCCTCTCTCGATCAAACGGTCCACAAGATGCGACCCGACGAACCCAGCCCCGCCGGTCACCACGATCCGGAGGCCTTTCCGCTTCAGCCCAAGTGGGATCTTGCCGCCGGAGTTCATTACACGGTGGACTTGGAAGCCGGCTCGGTGTTCGTACGACGGCGTATTGGACCACCGGGCAAGTTCAGTGGGGATCGGGTCGTATCCGACCCGGGAAGGATAATTGGAAGAGGGTAAGAGGGCGAAAACGAAAGTGGCGATGGCAATGCCGACGAGGACGAAAAGGAGGCGCTGTTCACGGAGCATGTAGCGAATCGGACGGGTGACGGACAGCCATGGTTTTGGGGGTTTTGGGGAATATGCGTCCGCCGCCGGTTGGGTCTCGTCGTGTCCTCTGAATATTAACTCCGATCCCATTTTTGGACTTCAAATTCGATCGGAACAGAACAGGGTTTAGAGGTCTTCTTTTATCTTTTCCTGCGCCGGCGACGGCGGAGGCAGGATGGCCGGGAATTGGGGGCCACGAGCGGCGGAGGCGAGGAGAGGAGAGGGGACTTTTTTTTGTTTACCGATGGGGGAAAGGGCCGATTTAGGAGGGTCTTAAAGGGAGAGAGGGTAGAGAA

Coding sequence (CDS)

ATGTTCAAAGTTCCGACCACATTGGTCTTGGGAAGCAGGGCAAGCCAAATGGTAGATCTGGTCTACTTCAAGAAGAAGCGGTTCAACAACATCGTGTCGAATCAATTCAAATCTCGGGTTCCCGAAATGATGCATCACGTTTTCTTTCCGTCCGGTGAAGAAATTATCCACCACGATCACGCTGTCGCCTCTCTCGATCAAACGGTCCACAAGATGCGACCCGACGAACCCAGCCCCGCCGGTCACCACGATCCGGAGGCCTTTCCGCTTCAGCCCAAGTGGGATCTTGCCGCCGGAGTTCATTACACGGTGGACTTGGAAGCCGGCTCGGTGTTCGTACGACGGCGTATTGGACCACCGGGCAAGTTCAGTGGGGATCGGGTCGTATCCGACCCGGGAAGGATAATTGGAAGAGGGTAA

Protein sequence

MFKVPTTLVLGSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVHKMRPDEPSPAGHHDPEAFPLQPKWDLAAGVHYTVDLEAGSVFVRRRIGPPGKFSGDRVVSDPGRIIGRG

Homology

[Close]

BLAST of Cmc07g0205141 vs. NCBI nr
Match: KAG6581267.1 (hypothetical protein SDJN03_21269, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 85/129 (65.89%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 17  MVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVHKMRPDE 76
           MVDLV+FKK+R N++VSN+ KS +P+M+HHVF PSGEEI+HH H VASL+QTVH++RP E
Sbjct: 1   MVDLVHFKKQRLNHVVSNELKSWIPKMVHHVFLPSGEEIVHHYHTVASLNQTVHEVRPHE 60

Query: 77  PSPAGHHDPEAFPLQPKWDLAAGVHYTVDLEAGSVFVRRRIGPPGKFSGDRVVS------ 136
           P PA H+DPE   LQP+WDL +GVH  VDLE+ SV VR RIGPPGK   DRVVS      
Sbjct: 61  PGPACHYDPEPLSLQPQWDLTSGVHDPVDLESSSVLVRWRIGPPGKVGWDRVVSVSVSVA 120

Query: 137 DPGRIIGRG 140
           DPGR IGRG
Sbjct: 121 DPGRGIGRG 129

[Close]

BLAST of Cmc07g0205141 vs. NCBI nr
Match: RDX76085.1 (hypothetical protein CR513_43964, partial [Mucuna pruriens])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 11  GSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVH 70
           GSRAS+MVDL+  +++R +++VS++ +SRVP+MMHHV  PS EEI+HHDHAV S +Q +H
Sbjct: 4   GSRASEMVDLIDLEQERLDDVVSDELESRVPKMMHHVLLPSREEIVHHDHAVPSRNQPIH 63

Query: 71  KMRPDEPSPAGHHDPEAFPLQPKWDLAAGVHYTVDLEAGSVFVRRRIG 119
           ++RP EP    HHDPE  PL P+  L   VH        +V VRR++G
Sbjct: 64  QVRPHEPRATRHHDPEPLPLNPQRHLPHRVH-----RRCTVLVRRKLG 106

[Close]

BLAST of Cmc07g0205141 vs. NCBI nr
Match: KZN10176.1 (hypothetical protein DCAR_002832 [Daucus carota subsp. sativus])

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 12  SRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVHK 71
           SRAS+M+DL+ FK++  N++VS+  K RVP+MMHH+     E+IIHH+H +    Q VH+
Sbjct: 5   SRASEMIDLIDFKQQGLNDVVSDHLKPRVPKMMHHILLAPSEKIIHHNHTIPPRHQPVHQ 64

Query: 72  MRPDEPSPAGHHDPEAFPLQPKWDLAAGVH 102
           M PDEP  AG H+P    L+P+ DL AG H
Sbjct: 65  MAPDEPGAAGDHNPPPLGLEPQRDLPAGAH 94

[Close]

BLAST of Cmc07g0205141 vs. NCBI nr
Match: KAF5800579.1 (hypothetical protein HanXRQr2_Chr06g0238431 [Helianthus annuus])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 45/85 (52.94%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 1  MFKVPTTLVLGSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDH 60
          MF VPTT VLGSRAS+++DL+ FK++R N++VSN+FKSRV ++MH V   +GEEII+++H
Sbjct: 1  MFNVPTTFVLGSRASKVIDLIDFKQQRLNDVVSNKFKSRVSKVMHDVILITGEEIINNNH 60

Query: 61 AVASLDQTVHKMRPDEPSPAGHHDP 86
           ++S +Q +++M   E   AGHH P
Sbjct: 61 TISSRNQPINQMTSHETCTAGHHYP 85

[Close]

BLAST of Cmc07g0205141 vs. NCBI nr
Match: GER28647.1 (UDP-glucuronic acid decarboxylase 1 [Striga asiatica])

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-15
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 11 GSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVH 70
          G RA QMVDL+ F++ R ++IV +QF+ RVPE MHHV  P  EEI+HHDH V S DQ VH
Sbjct: 4  GRRAGQMVDLIDFQQNRLHHIVPDQFEPRVPEQMHHVLLPPREEIVHHDHVVPSGDQLVH 63

Query: 71 KMRPDEPSPAGHHDP 86
          +M PDE   AG  DP
Sbjct: 64 QMAPDETRAAGDDDP 78

[Close]

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL
Match: A0A371FCR1 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_43964 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 11  GSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVH 70
           GSRAS+MVDL+  +++R +++VS++ +SRVP+MMHHV  PS EEI+HHDHAV S +Q +H
Sbjct: 4   GSRASEMVDLIDLEQERLDDVVSDELESRVPKMMHHVLLPSREEIVHHDHAVPSRNQPIH 63

Query: 71  KMRPDEPSPAGHHDPEAFPLQPKWDLAAGVHYTVDLEAGSVFVRRRIG 119
           ++RP EP    HHDPE  PL P+  L   VH        +V VRR++G
Sbjct: 64  QVRPHEPRATRHHDPEPLPLNPQRHLPHRVH-----RRCTVLVRRKLG 106

[Close]

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL
Match: A0A162AK56 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002832 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 12  SRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVHK 71
           SRAS+M+DL+ FK++  N++VS+  K RVP+MMHH+     E+IIHH+H +    Q VH+
Sbjct: 5   SRASEMIDLIDFKQQGLNDVVSDHLKPRVPKMMHHILLAPSEKIIHHNHTIPPRHQPVHQ 64

Query: 72  MRPDEPSPAGHHDPEAFPLQPKWDLAAGVH 102
           M PDEP  AG H+P    L+P+ DL AG H
Sbjct: 65  MAPDEPGAAGDHNPPPLGLEPQRDLPAGAH 94

[Close]

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL
Match: A0A2P2M447 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 14  ASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVHKMR 73
           ASQ+VDL+ F++ R ++IVSN+ KSR+P+ MH VFFPSGE++I+HD+ + + DQ +H+M 
Sbjct: 52  ASQVVDLINFQQNRLDDIVSNELKSRIPKQMHQVFFPSGEKVINHDNLIPARDQLIHEMA 111

Query: 74  PDEPSPAGHHDPEAFPLQPKWDLAAGVHYTVDLEAGSVFVRRRIGPPGKFSG 126
            D+P P G+H+P      P+ D +   H  +  +AG   VR +    GK  G
Sbjct: 112 ADKPGPTGNHNPGPPAPDPRRDPSR--HRALGEQAGGGGVRAKTCAGGKGGG 161

[Close]

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL
Match: A0A1D1Y5R8 (Uncharacterized protein (Fragment) OS=Anthurium amnicola OX=1678845 GN=g.108191 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 40/83 (48.19%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 11  GSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVH 70
           G  A ++VD+V  +++  +++V++Q ++RV E++HHV  P  EE++H+DHAV SL Q VH
Sbjct: 94  GGGAGEVVDVVDLEEEGLHHVVTDQLEARVAEVVHHVLLPPREEVVHNDHAVPSLHQQVH 153

Query: 71  KMRPDEPSPAGHHDPEAFPLQPK 94
           ++RP EP P+ HHDP+A PLQP+
Sbjct: 154 QVRPHEPHPSRHHDPQALPLQPQ 176

[Close]

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL
Match: A0A5A7P7L1 (UDP-glucuronic acid decarboxylase 1 OS=Striga asiatica OX=4170 GN=STAS_04449 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.0e-16
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 11 GSRASQMVDLVYFKKKRFNNIVSNQFKSRVPEMMHHVFFPSGEEIIHHDHAVASLDQTVH 70
          G RA QMVDL+ F++ R ++IV +QF+ RVPE MHHV  P  EEI+HHDH V S DQ VH
Sbjct: 4  GRRAGQMVDLIDFQQNRLHHIVPDQFEPRVPEQMHHVLLPPREEIVHHDHVVPSGDQLVH 63

Query: 71 KMRPDEPSPAGHHDP 86
          +M PDE   AG  DP
Sbjct: 64 QMAPDETRAAGDDDP 78

The following BLAST results are available for this feature:

BLAST of Cmc07g0205141 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581267.1	1.7e-40	65.89	hypothetical protein SDJN03_21269, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RDX76085.1	2.1e-22	50.93	hypothetical protein CR513_43964, partial [Mucuna pruriens]	[more]
KZN10176.1	4.1e-18	50.00	hypothetical protein DCAR_002832 [Daucus carota subsp. sativus]	[more]
KAF5800579.1	1.3e-16	52.94	hypothetical protein HanXRQr2_Chr06g0238431 [Helianthus annuus]	[more]
GER28647.1	1.5e-15	58.67	UDP-glucuronic acid decarboxylase 1 [Striga asiatica]	[more]

BLAST of Cmc07g0205141 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371FCR1	1.0e-22	50.93	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_43964 P...	[more]
A0A162AK56	2.0e-18	50.00	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002832 ...	[more]
A0A2P2M447	2.2e-17	42.86	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A1D1Y5R8	1.8e-16	48.19	Uncharacterized protein (Fragment) OS=Anthurium amnicola OX=1678845 GN=g.108191 ...	[more]
A0A5A7P7L1	7.0e-16	58.67	UDP-glucuronic acid decarboxylase 1 OS=Striga asiatica OX=4170 GN=STAS_04449 PE=...	[more]

BLAST of Cmc07g0205141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc07g0205141.1	Cmc07g0205141.1	mRNA