Cmc04g0120631 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0120631
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr04: 36097999 .. 36098898 (+)
RNA-Seq Expression	Cmc04g0120631
Synteny	Cmc04g0120631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGAAGAATATAGATAATCCAAAATCTATAGCCTTGAGAGGGGAATTCTCCTTCTTGTTAGCGAACAAGAAATTTTCAGGCTTCAAGTCTCTGTGAATTACCCCATGCTTATGGCATAGTTGCACAACCTCAACGATTGTTCTCATAACAGCCGCAGCTGCTCGTTCCGTGTAATGTCCTCTTGCAACAATTCGATCAAAAAGCTCGCCACCCTCACACAATTCCATCACCAAATGCACAGCATTCTCATCCTCACAAGCTTCCTTCAAGCTCACAATACTCGAATTCTTAGGCAAATGCTTCATAATTGCAACTTCACGCCTCACATCCTCAATATCCACAGCCGTCCTCAACTTCCGCTTCGAAATACTCTTACAAGCCAATAAATCCCTCGTTTGACGGTCTATACAAAGATAAGTAACACCAAACTCACCTCGACCAAGCTCCCGATCCACCATATACTTCTCCTCAATATTCTCCTTTGGCACACCATTCAACACCGTAACCGGTACCTTCTTTCCCGCATTCGAGTCCCGACGGCTATGATCCTGTCCCGAAAAACTCGATTTCACATCCTCCCTAGCAACAGCCGCCGGAGATCTACAACAATTCCCCATCAGAGTAGAAAAACCTCAAATCTCCACCGTTGGATCTCCGAAAACCCTCAACCAAAAGCAGTCAGTAAACAGAGAAGCTTTTGAACATTCAGACCATAATGGCGAAACCCTAACCCTAAGAAGAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAAGAAGAAGGTCCCCGTGAAGTGAAATCAAAGAGTAATGTCAGGGAAATGGAACCGTAGAAGGGAAATTGGGAGAGAGAGAGAGAGAGAAAGTGAGTGTTGTTGAAGTAGAGAGAGTGAGTAGAGAGTG

mRNA sequence

GCTTGAAGAATATAGATAATCCAAAATCTATAGCCTTGAGAGGGGAATTCTCCTTCTTGTTAGCGAACAAGAAATTTTCAGGCTTCAAGTCTCTGTGAATTACCCCATGCTTATGGCATAGTTGCACAACCTCAACGATTGTTCTCATAACAGCCGCAGCTGCTCGTTCCGTGTAATGTCCTCTTGCAACAATTCGATCAAAAAGCTCGCCACCCTCACACAATTCCATCACCAAATGCACAGCATTCTCATCCTCACAAGCTTCCTTCAAGCTCACAATACTCGAATTCTTAGGCAAATGCTTCATAATTGCAACTTCACGCCTCACATCCTCAATATCCACAGCCGTCCTCAACTTCCGCTTCGAAATACTCTTACAAGCCAATAAATCCCTCGTTTGACGGTCTATACAAAGATAAGTAACACCAAACTCACCTCGACCAAGCTCCCGATCCACCATATACTTCTCCTCAATATTCTCCTTTGGCACACCATTCAACACCGTAACCGGTACCTTCTTTCCCGCATTCGAGTCCCGACGGCTATGATCCTGTCCCGAAAAACTCGATTTCACATCCTCCCTAGCAACAGCCGCCGGAGATCTACAACAATTCCCCATCAGAGTAGAAAAACCTCAAATCTCCACCGTTGGATCTCCGAAAACCCTCAACCAAAAGCAGTCAGTAAACAGAGAAGCTTTTGAACATTCAGACCATAATGGCGAAACCCTAACCCTAAGAAGAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAAGAAGAAGGTCCCCGTGAAGTGAAATCAAAGAGTAATGTCAGGGAAATGGAACCGTAGAAGGGAAATTGGGAGAGAGAGAGAGAGAGAAAGTGAGTGTTGTTGAAGTAGAGAGAGTGAGTAGAGAGTG

Coding sequence (CDS)

ATGTCCTCTTGCAACAATTCGATCAAAAAGCTCGCCACCCTCACACAATTCCATCACCAAATGCACAGCATTCTCATCCTCACAAGCTTCCTTCAAGCTCACAATACTCGAATTCTTAGGCAAATGCTTCATAATTGCAACTTCACGCCTCACATCCTCAATATCCACAGCCGTCCTCAACTTCCGCTTCGAAATACTCTTACAAGCCAATAA

Protein sequence

MSSCNNSIKKLATLTQFHHQMHSILILTSFLQAHNTRILRQMLHNCNFTPHILNIHSRPQLPLRNTLTSQ

Homology

[Close]

BLAST of Cmc04g0120631 vs. NCBI nr
Match: RWW16963.1 (hypothetical protein GW17_00019124, partial [Ensete ventricosum])

HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 4   CNNSIKKLATLTQFHHQMHSILILTSFLQAHNTRILRQMLHNCNFTPHILNIHSRPQLPL 63
           CN+ I++L  LT+ HHQ+H  ++L   +Q HN    RQ+ H+ +  PH+L++H RP+L L
Sbjct: 160 CNDPIEELPALTELHHQVHGAVVLPRLVQGHNAGAPRQVAHDGHLPPHVLDVHRRPELAL 219

Query: 64  RNTLTSQ 71
           R+ L  +
Sbjct: 220 RDRLARE 226

[Close]

BLAST of Cmc04g0120631 vs. ExPASy TrEMBL
Match: A0A444F2X8 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00019124 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-07
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 4   CNNSIKKLATLTQFHHQMHSILILTSFLQAHNTRILRQMLHNCNFTPHILNIHSRPQLPL 63
           CN+ I++L  LT+ HHQ+H  ++L   +Q HN    RQ+ H+ +  PH+L++H RP+L L
Sbjct: 160 CNDPIEELPALTELHHQVHGAVVLPRLVQGHNAGAPRQVAHDGHLPPHVLDVHRRPELAL 219

Query: 64  RNTLTSQ 71
           R+ L  +
Sbjct: 220 RDRLARE 226

[Close]

BLAST of Cmc04g0120631 vs. ExPASy TrEMBL
Match: A0A2I0VE34 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028645 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-04
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MSSCNNSIKKLATLTQFHHQMHSILILTSFLQAHNTRILRQMLHNCNFTPHILNIHSRPQ 60
          MS  NN IK+L + T+ HH MHS  +L S    ++  +  QM+H  N  PHI++I  R +
Sbjct: 28 MSPLNNPIKQLPSNTEVHHNMHSYRVLISINNRNHIGMPGQMMHYLNLPPHIIDILLRDK 87

Query: 61 LPLRNTLTSQ 71
          LPL + L S+
Sbjct: 88 LPLGDRLASE 97

The following BLAST results are available for this feature:

BLAST of Cmc04g0120631 vs. NCBI nr


Match Name	E-value	Identity	Description
RWW16963.1	6.2e-07	40.30	hypothetical protein GW17_00019124, partial [Ensete ventricosum]	[more]

BLAST of Cmc04g0120631 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0120631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444F2X8	3.0e-07	40.30	Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0001912...	[more]
A0A2I0VE34	5.3e-04	41.43	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca028645 PE=4...	[more]

BLAST of Cmc04g0120631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0120631.1	Cmc04g0120631.1	mRNA