MELO3C001968 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001968
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	transcription factor PRE5-like
Location	chr12: 25726868 .. 25727632 (-)
RNA-Seq Expression	MELO3C001968
Synteny	MELO3C001968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCGTTGATTTGTCGCAACAAAAGTGAGACCGTAGAAGGGATCTTCTCGTAGAAACGACAGGTGTTCGATTGTCGTAAGCTGATGGGCTTTGATTGTGGGCCTTCTCACTGTTCATATTGTAAGAAAATGGGCCAGCCGTGATTGGAACTTTCTCTTCTACCCTTTTTAAAACCTCATTCTTCCCCTCTCCCTAGAAGCTAAAACACAAACAACATTCCTTTTTTGTTCTCTCCAAATTTGCTTCTTTTTTTTCTTTTCATCCATGGCTTCCTCCAAATTAGGTGATAATGAGCTTAAAAATCTTGTCTCCAAATTGCGAACTTTGCTCCCTCAACTCAACCATAAGCCCGACAACTCCTCCGAGGTACTTAATCTCGTTGTCGTCTACTTAATTTCTTCTTTAACTTAACTTAACTAAGGGTAAATATAATTAGTTTTTGAGTTTAGTAGTGATTAAGGTGTGTTATGTGTATAGGCATCGACGGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTAATTTTTACTTAATTAGTCTCATTTGTATGCGTTTGTATTTTGAAACTGATGAGTTTGGTCTCTTCAGCGTTACCAAACAACCGACAGTTGAGAGAGAAAAAGGGTTGTGGATTCTATAATATTTCTATATATATTATATGTATTTTTCTA

mRNA sequence

GTGCGTTGATTTGTCGCAACAAAAGTGAGACCGTAGAAGGGATCTTCTCGTAGAAACGACAGGTGTTCGATTGTCGTAAGCTGATGGGCTTTGATTGTGGGCCTTCTCACTGTTCATATTGTAAGAAAATGGGCCAGCCGTGATTGGAACTTTCTCTTCTACCCTTTTTAAAACCTCATTCTTCCCCTCTCCCTAGAAGCTAAAACACAAACAACATTCCTTTTTTGTTCTCTCCAAATTTGCTTCTTTTTTTTCTTTTCATCCATGGCTTCCTCCAAATTAGGTGATAATGAGCTTAAAAATCTTGTCTCCAAATTGCGAACTTTGCTCCCTCAACTCAACCATAAGCCCGACAACTCCTCCGAGGCATCGACGGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTAATTTTTACTTAATTAGTCTCATTTGTATGCGTTTGTATTTTGAAACTGATGAGTTTGGTCTCTTCAGCGTTACCAAACAACCGACAGTTGAGAGAGAAAAAGGGTTGTGGATTCTATAATATTTCTATATATATTATATGTATTTTTCTA

Coding sequence (CDS)

ATGGCTTCCTCCAAATTAGGTGATAATGAGCTTAAAAATCTTGTCTCCAAATTGCGAACTTTGCTCCCTCAACTCAACCATAAGCCCGACAACTCCTCCGAGGCATCGACGGGGGAGATATTGAAGGAGACGTGTGATTATATAAAGAAATTGCAAAAGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTGTTGACTTTGAAATGGTTAAAGATCTTCTAATTTTTACTTAA

Protein sequence

MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQLDSMGVDFEMVKDLLIFT

Homology

[Close]

BLAST of MELO3C001968 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-10
Identity = 32/70 (45.71%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 3  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 62
          +S++ D+++ +LVSKLR  LP++ H+   S + S  ++L+ETC+YI+KL +EVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGVD 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of MELO3C001968 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.6e-10
Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 2  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSER 61
          ++ ++ DN++ +LVSKLR +LP++  +   S +AS  ++L+ETC+YI+ L +EVD+LSER
Sbjct: 11 SAPRISDNQMIDLVSKLRQILPEIGQR-RRSDKASASKVLQETCNYIRNLNREVDNLSER 70

Query: 62 LWKQLDSMGVD 73
          L + L+S+  D
Sbjct: 71 LSQLLESVDED 80

[Close]

BLAST of MELO3C001968 vs. ExPASy Swiss-Prot
Match: A2X9L8 (Transcription factor ILI5 OS=Oryza sativa subsp. indica OX=39946 GN=ILI5 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-09
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 63
          + + E+  L+SKL++LLP  N +   SS+AST ++LKETC+YIK L +EVDDLS+RL
Sbjct: 11 ISEEEINELISKLQSLLP--NSRRRGSSQASTTKLLKETCNYIKSLHREVDDLSDRL 65

[Close]

BLAST of MELO3C001968 vs. ExPASy Swiss-Prot
Match: Q6YUX0 (Transcription factor ILI5 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI5 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-09
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 63
          + + E+  L+SKL++LLP  N +   SS+AST ++LKETC+YIK L +EVDDLS+RL
Sbjct: 11 ISEEEINELISKLQSLLP--NSRRRGSSQASTTKLLKETCNYIKSLHREVDDLSDRL 65

[Close]

BLAST of MELO3C001968 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-09
Identity = 32/81 (39.51%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 3  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 62
          SS++ D+++ +LVSKL+ L+P+L  +   S + S  ++L+ETC+YI+ L +EVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRR--RSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGVDFEMVKDLL 81
           + L   D    +  +++ LL
Sbjct: 74 SELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of MELO3C001968 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKDLLIFT 84
          RLWKQLDSMGVDFEMVKDLLIFT
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLIFT 83

[Close]

BLAST of MELO3C001968 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 4.6e-33
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKDLLIFT 84
          RLWKQLDSMG+DFEMVKDLL FT
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLSFT 83

[Close]

BLAST of MELO3C001968 vs. NCBI nr
Match: TYJ98875.1 (transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 7.8e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEM 76
          RLWKQLDSMGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of MELO3C001968 vs. NCBI nr
Match: XP_038895474.1 (transcription factor PRE5-like [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 6.0e-25
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTG--EILKETCDYIKKLQKEVDDL 60
           MASSKL D++L+NLV KL+TLLP LN KPDN S  S    +ILKETCDYIKKLQ+EVDDL
Sbjct: 42  MASSKLADDDLQNLVFKLQTLLPHLNRKPDNDSAVSVSATDILKETCDYIKKLQREVDDL 101

Query: 61  SERLWKQLDSMGVDFEMVKDLLIFT 84
           SERLWKQLDSMGVD EMVKDL++ +
Sbjct: 102 SERLWKQLDSMGVDLEMVKDLILLS 126

[Close]

BLAST of MELO3C001968 vs. NCBI nr
Match: KAG7020038.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASS L D++L+NL+S+L+TLLPQLNH   ++S  ST EILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTL-HTSTVSTAEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKDLL 81
          RLWKQLDSMGVDFEMVK LL
Sbjct: 61 RLWKQLDSMGVDFEMVKHLL 79

[Close]

BLAST of MELO3C001968 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKDLLIFT 84
          RLWKQLDSMGVDFEMVKDLLIFT
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLIFT 83

[Close]

BLAST of MELO3C001968 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKDLLIFT 84
          RLWKQLDSMGVDFEMVKDLLIFT
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLIFT 83

[Close]

BLAST of MELO3C001968 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETCDYIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGVDFEMVKDLLIFT 84
          RLWKQLDSMG+DFEMVKDLL FT
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLSFT 83

[Close]

BLAST of MELO3C001968 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60
          MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGVDFEM 76
          RLWKQLDSMGVDFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of MELO3C001968 vs. ExPASy TrEMBL
Match: A0A5B6V213 (Transcription factor ILI3-like OS=Gossypium australe OX=47621 GN=EPI10_029603 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 2  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSER 61
          AS+K+ D+EL  L+ +L TLLPQLNH     + +ST +ILKETC YI++LQKEVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYIRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGV---DFEMVKDLL 81
          L + LDSM +   D E + +LL
Sbjct: 64 LSQCLDSMDITSSDAEFLTNLL 85

[Close]

BLAST of MELO3C001968 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 32/70 (45.71%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 3  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 62
          +S++ D+++ +LVSKLR  LP++ H+   S + S  ++L+ETC+YI+KL +EVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGVD 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of MELO3C001968 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 2  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSER 61
          ++ ++ DN++ +LVSKLR +LP++  +   S +AS  ++L+ETC+YI+ L +EVD+LSER
Sbjct: 11 SAPRISDNQMIDLVSKLRQILPEIGQR-RRSDKASASKVLQETCNYIRNLNREVDNLSER 70

Query: 62 LWKQLDSMGVD 73
          L + L+S+  D
Sbjct: 71 LSQLLESVDED 80

[Close]

BLAST of MELO3C001968 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-10
Identity = 32/81 (39.51%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 3  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 62
          SS++ D+++ +LVSKL+ L+P+L  +   S + S  ++L+ETC+YI+ L +EVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRR--RSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGVDFEMVKDLL 81
           + L   D    +  +++ LL
Sbjct: 74 SELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of MELO3C001968 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-10
Identity = 28/68 (41.18%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 2  ASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSER 61
          +SS++ D+++ +L+SKLR  +P++      S+  S  ++L+ETC+YI+ L KE DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of MELO3C001968 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 3  SSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERL 62
          +S + D ++ +LV +L  LLP+L +    S + S   +L+ETC YI+ L KEVDDLSERL
Sbjct: 13 ASMITDEQINDLVLQLHRLLPELANN-RRSGKVSASRVLQETCSYIRNLSKEVDDLSERL 72

Query: 63 WKQLDS 69
           + L+S
Sbjct: 73 SQLLES 77

The following BLAST results are available for this feature:

BLAST of MELO3C001968 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJX1	2.5e-10	45.71	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9FLE9	9.6e-10	43.66	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
A2X9L8	2.8e-09	54.39	Transcription factor ILI5 OS=Oryza sativa subsp. indica OX=39946 GN=ILI5 PE=3 SV...	[more]
Q6YUX0	2.8e-09	54.39	Transcription factor ILI5 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI5 PE=1 ...	[more]
Q8GW32	6.2e-09	39.51	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]

BLAST of MELO3C001968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440200.1	4.0e-37	100.00	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
XP_011649678.1	4.6e-33	90.36	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
TYJ98875.1	7.8e-33	100.00	transcription factor PRE5-like [Cucumis melo var. makuwa]	[more]
XP_038895474.1	6.0e-25	74.12	transcription factor PRE5-like [Benincasa hispida]	[more]
KAG7020038.1	1.5e-23	77.50	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MELO3C001968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZP9	1.9e-37	100.00	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	1.9e-37	100.00	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A0A0LQ05	2.2e-33	90.36	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5D3BKI2	3.8e-33	100.00	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5B6V213	5.7e-13	56.10	Transcription factor ILI3-like OS=Gossypium australe OX=47621 GN=EPI10_029603 PE...	[more]

BLAST of MELO3C001968 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28857.1	1.8e-11	45.71	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	6.8e-11	43.66	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G26945.1	4.4e-10	39.51	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	9.9e-10	41.18	BANQUO 2	[more]
AT3G47710.1	1.4e-08	45.45	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..80
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 1..57 e-value: 0.0077 score: 25.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 11..52 e-value: 1.5E-6 score: 28.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..51 score: 9.476738
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 9..75 e-value: 2.3E-10 score: 42.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 9..56
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001968.1	MELO3C001968.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity