MELO3C033142 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033142
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr12: 18072370 .. 18072910 (-)
RNA-Seq Expression	MELO3C033142
Synteny	MELO3C033142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATCATGTTTTCAATTGCATTGCCGTTTCCAAACATGGTGCATCTGTATGCGACTGTGAGTAAGGTAGATTTGGCCATAAACTTAAATATAGAGTAGGAATATGTTGAAGAATATGTTGATGTTGACTTGGAGTCAGATGCACAACCAGTGTGCCATGAAGAAGAAATGGTAGCTAACAACGAATACAGAGAGTTTAGAACAGAAACTAATGGTGAATTCAAAGAGATGCACTTCGATGGCCGTGAATATGAAGTTCCATCCAATACATTCACTGAGTTGGACATGAATGCAGTAGATAACATTTAAGAACACGATCCAATTATAGTTTCGATGGTGACTGACAACACGAAATTGTACAAGGAAATGATTTGTGAAAACAAAGAAATGTTGCAACATATGGTTAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTAGAGTCAACACTGACAAAGTGAGTCATCCGATGTATGAAGTCGAACGAAGGTTGCAGATGGAGACTTCGTGCAATAATGAAAAAATCTCATG

mRNA sequence

ATGAACATCATGTTTTCAATTGCATTGCCGTTTCCAAACATGGTGCATCTGTATGCGACTGTGAGTAAGGTAGATTTGGCCATAAACTTAAATATAGAGTAGGAATATGTTGAAGAATATGTTGATGTTGACTTGGAGTCAGATGCACAACCAGTGTGCCATGAAGAAGAAATGGTAGCTAACAACGAATACAGAGAGTTTAGAACAGAAACTAATGGTGAATTCAAAGAGATGCACTTCGATGGCCGTGAATATGAAGTTCCATCCAATACATTCACTGAGTTGGACATGAATGCAGTAGATAACATTTAAGAACACGATCCAATTATAGTTTCGATGGTGACTGACAACACGAAATTGTACAAGGAAATGATTTGTGAAAACAAAGAAATGTTGCAACATATGGTTAAGTGTTTTGCTATTAAAAGTCACGCACCATATGAAGTAGTAGAGTCAACACTGACAAAGTGAGTCATCCGATGTATGAAGTCGAACGAAGGTTGCAGATGGAGACTTCGTGCAATAATGAAAAAATCTCATG

Coding sequence (CDS)

ATGGTAGCTAACAACGAATACAGAGAGTTTAGAACAGAAACTAATGGTGAATTCAAAGAGATGCACTTCGATGGCCGTGAATATGAAGTTCCATCCAATACATTCACTGAGTTGGACATGAATGCAGTAGATAACATTTAA

Protein sequence

MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI

Homology

[Close]

BLAST of MELO3C033142 vs. NCBI nr
Match: KAA0047088.1 (uncharacterized protein E6C27_scaffold466G00530 [Cucumis melo var. makuwa] >TYK05067.1 uncharacterized protein E5676_scaffold1317G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI
Sbjct: 32 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 77

[Close]

BLAST of MELO3C033142 vs. NCBI nr
Match: TYJ97998.1 (uncharacterized protein E5676_scaffold487G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          MVANNEYREFRTET+ EF+EMHF+GREYEVPSNTF ELDMNAVD+I
Sbjct: 7  MVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSI 52

[Close]

BLAST of MELO3C033142 vs. NCBI nr
Match: KAA0053568.1 (uncharacterized protein E6C27_scaffold190G001350 [Cucumis melo var. makuwa] >TYK19159.1 uncharacterized protein E5676_scaffold522G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          MVANNEYRE RTE + EFK+MHFDGREYEVPSNTFTELDMNAVD+I
Sbjct: 1  MVANNEYRELRTEIDDEFKKMHFDGREYEVPSNTFTELDMNAVDSI 46

[Close]

BLAST of MELO3C033142 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
           MVA NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 58  MVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 103

[Close]

BLAST of MELO3C033142 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 6.1e-11
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          M+A NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 1  MIATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 46

[Close]

BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match: A0A5D3BZT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00370 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI
Sbjct: 32 MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 77

[Close]

BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match: A0A5D3BII2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00210 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-14
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          MVANNEYREFRTET+ EF+EMHF+GREYEVPSNTF ELDMNAVD+I
Sbjct: 7  MVANNEYREFRTETDDEFEEMHFNGREYEVPSNTFIELDMNAVDSI 52

[Close]

BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match: A0A5D3D6H6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00860 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          MVANNEYRE RTE + EFK+MHFDGREYEVPSNTFTELDMNAVD+I
Sbjct: 1  MVANNEYRELRTEIDDEFKKMHFDGREYEVPSNTFTELDMNAVDSI 46

[Close]

BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-11
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
           MVA NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 58  MVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 103

[Close]

BLAST of MELO3C033142 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  MVANNEYREFRTETNGEFKEMHFDGREYEVPSNTFTELDMNAVDNI 47
          M+A NEY EFRTET+ EF+EM FDG EYEVPSNTFT+LDMNAVD+I
Sbjct: 1  MIATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDI 46

The following BLAST results are available for this feature:

BLAST of MELO3C033142 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C033142 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047088.1	3.3e-17	100.00	uncharacterized protein E6C27_scaffold466G00530 [Cucumis melo var. makuwa] >TYK0...	[more]
TYJ97998.1	1.7e-13	86.96	uncharacterized protein E5676_scaffold487G00210 [Cucumis melo var. makuwa]	[more]
KAA0053568.1	2.2e-13	86.96	uncharacterized protein E6C27_scaffold190G001350 [Cucumis melo var. makuwa] >TYK...	[more]
TYK23115.1	4.6e-11	80.43	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK27427.1	6.1e-11	78.26	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MELO3C033142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZT0	1.6e-17	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BII2	8.3e-14	86.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D6H6	1.1e-13	86.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DHR2	2.3e-11	80.43	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DUI1	2.9e-11	78.26	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO3C033142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033142.1	MELO3C033142.1	mRNA