MELO3C000031 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000031
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	FBD domain-containing protein
Location	chr11: 22610573 .. 22610911 (-)
RNA-Seq Expression	MELO3C000031
Synteny	MELO3C000031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAGGAAGCCAAGTGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCAAAAAATGGCGATTTCCGTGGCCTTAGGAAGTACCTCAAGACCGTTATGATATATGGATATGTAACTGAGCCATATGTATTGGAGCTTATTGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTCCGATCAGGAGGATCGATTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCCTCCAAGTCTGCT

mRNA sequence

ACTGAGGAAGCCAAGTGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCAAAAAATGGCGATTTCCGTGGCCTTAGGAAGTACCTCAAGACCGTTATGATATATGGATATGTAACTGAGCCATATGTATTGGAGCTTATTGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTCCGATCAGGAGGATCGATTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCCTCCAAGTCTGCT

Coding sequence (CDS)

ATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCAAAAAATGGCGATTTCCGTGGCCTTAGGAAGTACCTCAAGACCGTTATGATATATGGATATGTAACTGAGCCATATGTATTGGAGCTTATTGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTCCGATCAGGAGGATCGATTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCCTCCAAGTCTGCT

Protein sequence

MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVISTKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA

Homology

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BLAST of MELO3C000031 vs. NCBI nr
Match: KAA0054510.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa] >TYJ98285.1 F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 388 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 447

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 448 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 494

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BLAST of MELO3C000031 vs. NCBI nr
Match: XP_016903698.1 (PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 38  MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 97

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 98  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 144

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BLAST of MELO3C000031 vs. NCBI nr
Match: XP_038902589.1 (uncharacterized protein LOC120089239 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           MEAYDFDGKDYWKS  GDFR LRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK+VIS
Sbjct: 142 MEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKVVIS 201

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           TKRTLQPIHQYELFKDAV DQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 202 TKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSA 248

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BLAST of MELO3C000031 vs. NCBI nr
Match: XP_004143230.1 (putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN47014.1 hypothetical protein Csa_020781 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 7.2e-47
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFR-GLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVI 60
           MEAYDFDGK YWKS+NGDFR GLRKYLKTV IYGYVTEPYVLELIEFLLKNALVLEKMVI
Sbjct: 400 MEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALVLEKMVI 459

Query: 61  STKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           STK+TLQPIHQYELFKDAV DQEDRFTP+ELLQFSQKLLTLPRASKSA
Sbjct: 460 STKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSA 507

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BLAST of MELO3C000031 vs. NCBI nr
Match: KAA8524482.1 (hypothetical protein F0562_010905 [Nyssa sinensis])

HSP 1 Score: 127.5 bits (319), Expect = 7.0e-26
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           ++AYDFD  +YW S+  +F  L  +LKT+MIYGY+TEPYV+EL+EFLLK A VLEKMV S
Sbjct: 397 IQAYDFDDVNYWNSQEANFTCLTHHLKTIMIYGYITEPYVIELVEFLLKRATVLEKMVFS 456

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           T +TLQP H Y  F  AV  Q+  FT E+LL  SQ+LL++PRAS  A
Sbjct: 457 TSKTLQPEHPYYFFAAAVDRQKHHFTSEKLLAISQRLLSIPRASTRA 503

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BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match: A0A5A7UGX2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00310 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 388 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 447

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 448 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 494

[Close]

BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match: A0A1S4E641 (uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 38  MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 97

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 98  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 144

[Close]

BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match: A0A0A0KDY5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.5e-47
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFR-GLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVI 60
           MEAYDFDGK YWKS+NGDFR GLRKYLKTV IYGYVTEPYVLELIEFLLKNALVLEKMVI
Sbjct: 400 MEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALVLEKMVI 459

Query: 61  STKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           STK+TLQPIHQYELFKDAV DQEDRFTP+ELLQFSQKLLTLPRASKSA
Sbjct: 460 STKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSA 507

[Close]

BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match: A0A5J5A3U5 (FBD domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010905 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
           ++AYDFD  +YW S+  +F  L  +LKT+MIYGY+TEPYV+EL+EFLLK A VLEKMV S
Sbjct: 397 IQAYDFDDVNYWNSQEANFTCLTHHLKTIMIYGYITEPYVIELVEFLLKRATVLEKMVFS 456

Query: 61  TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           T +TLQP H Y  F  AV  Q+  FT E+LL  SQ+LL++PRAS  A
Sbjct: 457 TSKTLQPEHPYYFFAAAVDRQKHHFTSEKLLAISQRLLSIPRASTRA 503

[Close]

BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match: A0A1R3H5K0 (FBD domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21467 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 4   YDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVISTKR 63
           YDFDG ++W+ + G F  L K LKT+ IYGY+TEPYV++ +EFLLKNA VLEK+ ISTK+
Sbjct: 406 YDFDGGNFWRLQEGTFHCLEKQLKTIKIYGYITEPYVIDTVEFLLKNATVLEKLEISTKK 465

Query: 64  TLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
           TL+  HQ        S Q+   + E+ L+FSQKL +LPRAS  A
Sbjct: 466 TLKHSHQAN-----SSCQKVELSAEQRLEFSQKLSSLPRASPRA 504

The following BLAST results are available for this feature:

BLAST of MELO3C000031 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C000031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054510.1	1.3e-51	100.00	F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa] >TYJ98285.1 F-box/FBD/LR...	[more]
XP_016903698.1	1.3e-51	100.00	PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo]	[more]
XP_038902589.1	8.5e-48	95.33	uncharacterized protein LOC120089239 [Benincasa hispida]	[more]
XP_004143230.1	7.2e-47	93.52	putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN47014.1 hypoth...	[more]
KAA8524482.1	7.0e-26	58.88	hypothetical protein F0562_010905 [Nyssa sinensis]	[more]

BLAST of MELO3C000031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGX2	6.1e-52	100.00	F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S4E641	6.1e-52	100.00	uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=...	[more]
A0A0A0KDY5	3.5e-47	93.52	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 ...	[more]
A0A5J5A3U5	3.4e-26	58.88	FBD domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010905 PE=4 S...	[more]
A0A1R3H5K0	1.4e-19	53.85	FBD domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21467...	[more]

BLAST of MELO3C000031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006566	FBD domain	PFAM	PF08387	FBD	coord: 22..59 e-value: 6.4E-8 score: 32.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000031.1	MELO3C000031.1	mRNA