MELO3C035041 (gene) Melon (DHL92) v4

Overview


Name	MELO3C035041
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 17129153 .. 17131757 (-)
RNA-Seq Expression	MELO3C035041
Synteny	MELO3C035041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTACAAGCTTTCAGAGCCAGATGGAAATGGATTGAAGGTGGAATGTGGGTTTGACAATAACAAGTAAACTTTCTTGCATGGTGCGATGCATGGATAGATTTTGTTCTGTAATATTTACATACAAAAATGGAAAGTTGGTTCGAGGAAGGAAAATAACATTTACATGTAAAATCATTTACAATCAATGTATAAGAACTTTTTTGAACTTCTCTGTTTTGTACTTGTTAAACATTTACATTTAATCGTTTTGCATTAACTACGAGATCGTTTAAATTGTATAAAATTATAGCTTAAATGTTGTAAAACGATCATTTAATATAATTAATATTAACGATTAAATGTTGTCAAATGGTTGTTTGAGAAAATTAACATTATCACTTGAATGTTGTAAATGATAGTTTAAAATAATTAACTTTATCGTTTGGTTGTTATTAATCGATCGTTAGATCAAATTTGTAATTTTAAATATCGATTATGCTTTGAAGATCGTTTGGGTTTATTATTAAATCGTTTAGTCACATAAACGATCGTTTATAGAGTAATACAAGATTGTTTATGACTACCAACCTAATCATTTATAGTTTATTTGTAATAACAAGATCATTTAGACCTAGTATACAATCATTTTAACTAAGACCAACGTTCTGGGTTAACATGACTGTACAATTGTTTTGGTGCTTGGTATAGAACCATAGGAATTTTTGGTTGCTAAAGATGAAGAAGGAGATTGAGAGCAAGAACAAAGAATATGAGTTGCTATAAAATAAATACAAGTTTTTGAGGCTTGACAATCTTACTGATGATTCCATGGTCGGCGAAGACAAGATTGAGGTCAATTGAGGAGTTGAAGGAGATGAGAGTGAAATTTAACAACTCAAGGAATTGTACACGTTTGAATATTTCTCTGTATTACACTTGGTAAAGAAAAACATGTAACTACATATTGTAAAACAATCGTTTAAAATAAAGAATATAAACATTCATTTAGAACGTTTGGATTTTATTATTAGATCATTTAGTTGCATAAACATTCATTTATAGAATATCAAATGATCATTTATGACTAACAAACCAATCGTTCAAAGGTTATTGAATGATCGTTTAAATTTAATGATAATATCGTTTAGATCTACTTAAATATCTTTTTAACATGAATGCGCGATCCTTTCCGATAACGACATAATCGTTTACATGTTGTAAATAATCGTTTAGTTACAGAATCATTTAAGATATACTAAACGATAAGTGTAAACGATGGTTTGTGGGTGAAAAAGGTTGTTGAATAAGAAATTTTGGAACCAATCACAAATTGCCACATCATTTACTAAAATAATTATATTTGGGATTAACTAAAAATTGGCATGTGTCCCAAATTAAATTTAAAGATAAATTGGACAATTCTAATGAGGTCACGTGTCTTTGTTATGGCAATTGGGTCAAATTAATTATTTTGATTCAATTAAATATTATTTAGTTGGGCTAGAAATCAATTGAGCCCAAAAATAAGCTTAATTTGGCCCAAAATTAAGTATGACCCAAATCCATGTGATTAAGTCCATGGGTATGGTCCATGGACTAGACCAACCCAAGTCTATAAAAGCCCACCAGGGAACTTTATAAATAGAGGAGTTCTTTTCATTTGCGGGGGTTGGAAATTTTTGACTCCAGAAGGTCTAGAGAGAATTCTCCCAAGAAATAGAAGCCTCCTCAACTCCTGAAGTCGACCACCCTCGAAGATTGAAGCTTCTTCGAAGATACAAGCTTTCTTCGAAGACTCCAATTTTAAGAACACCCTCAAAGATTGAAGCTCCTTTAAAGATACAAGCTTTCTTCCAAGACTCCAACTTTAAGAACATTCTCAAAGATTGAAGCTTCTTTGAAGATATAAGCTTTCTTCCAAGACTCCAACTTCAAGAACACCCTCAAAGGTTAAAGCTCCTTTGAAGATACAATCTTTCTTCCAAGACTCCAACTTCAAGAACAACCCCAAAGGTTGAAGCTCCTTTGAAGATACAAGCTTTCTTCCAAGACTCCAACTTTAAGAACACCCTCAAAGATTGAAGCTTCTTTGAAGATACAAGCTTTCTTCCAAGACTCCAACTTCAAGAACATCCTCAAAGGTTAAAGCTCCTTGAAGATACAGTCTTTCTTCCAAGACTCCAACTTCAAGAACTCCCCTAAAGGTTGAAGCTCCTTTGAAGATACAAGCTTTCTTCCAAGACTCCAACTTCAAGAACATCCTCAAAGGTTAAAGCTCCTTGAAGATACAGTCTTTCTTCCAAGACTCCAACTTCAAGAACACCCCTAAAGGTTGAAGCTCCTTTGAAGATACAAGCTTTCTTCCAAGATTCCAACTTCAAGAACATCACGTGCTTCGCTTCCTTAAATCAAGCACAAGCATCTAGCCGAGAGAGAATCAGAGGATCAAATTCTAGAGATCGAACCACATCGCATCAAACCAATGTAGATACAATATCAACAAAAGTTCAACTCCATGAATCGAATTTCTCCAGAAATCTCGTGTGAACAAAGGTTAATAACCATGTTGTTTACATGTTGTTTTAAAGATCGTTTTCATTTTATTAACAAATCGTTTACAT

mRNA sequence

ATGGGTTACAAGCTTTCAGAGCCAGATGGAAATGGATTGAAGGTGGAATGTGGGTTTGACAATAACAAATACAGTCTTTCTTCCAAGACTCCAACTTCAAGAACACCCCTAAAGGTTGAAGCTCCTTTGAAGATACAAGCTTTCTTCCAAGATTCCAACTTCAAGAACATCACGTGCTTCGCTTCCTTAAATCAAGCACAAGCATCTAGCCGAGAGAGAATCAGAGGATCAAATTCTAGAGATCGAACCACATCGCATCAAACCAATGTAGATACAATATCAACAAAAGTTCAACTCCATGAATCGAATTTCTCCAGAAATCTCGTGTGAACAAAGGTTAATAACCATGTTGTTTACATGTTGTTTTAAAGATCGTTTTCATTTTATTAACAAATCGTTTACAT

Coding sequence (CDS)

ATGGGTTACAAGCTTTCAGAGCCAGATGGAAATGGATTGAAGGTGGAATGTGGGTTTGACAATAACAAATACAGTCTTTCTTCCAAGACTCCAACTTCAAGAACACCCCTAAAGGTTGAAGCTCCTTTGAAGATACAAGCTTTCTTCCAAGATTCCAACTTCAAGAACATCACGTGCTTCGCTTCCTTAAATCAAGCACAAGCATCTAGCCGAGAGAGAATCAGAGGATCAAATTCTAGAGATCGAACCACATCGCATCAAACCAATGTAGATACAATATCAACAAAAGTTCAACTCCATGAATCGAATTTCTCCAGAAATCTCGTGTGA

Protein sequence

MGYKLSEPDGNGLKVECGFDNNKYSLSSKTPTSRTPLKVEAPLKIQAFFQDSNFKNITCFASLNQAQASSRERIRGSNSRDRTTSHQTNVDTISTKVQLHESNFSRNLV

Homology

[Close]

BLAST of MELO3C035041 vs. NCBI nr
Match: TYK05006.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 26 LSSKTPTSRTPLKVEAPLKIQAFFQDSNFKNITCFASLNQAQAS 70
          LSSKTPTSRTP K EAPLKIQAFF+DSNFKNITCFAS NQ   S
Sbjct: 33 LSSKTPTSRTPSKFEAPLKIQAFFEDSNFKNITCFASSNQVGTS 76

[Close]

BLAST of MELO3C035041 vs. NCBI nr
Match: KAA0054154.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.9e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 19  FDNNKYSLSSKTPTSRTPLKVEAPLKIQAFFQDSNFKNITCFASLNQAQASS--RERIRG 78
           F +    LSSK+ TSRTP K+EA  KIQ FFQDSNFKNITCFAS NQA++    +E+ +G
Sbjct: 57  FSHRGSKLSSKSSTSRTPSKIEASSKIQPFFQDSNFKNITCFASSNQARSKGIIQEQDQG 116

[Close]

BLAST of MELO3C035041 vs. NCBI nr
Match: KAA0047202.1 (hypothetical protein E6C27_scaffold83G00860 [Cucumis melo var. makuwa] >TYK01320.1 hypothetical protein E5676_scaffold69G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.6e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 23  KYSLSSKTPTSRTPLKVEAPLKIQAFFQDSNFKN 57
           ++ LSSKTP SRTP K+EAPLKIQAFFQ  NFKN
Sbjct: 97  QHYLSSKTPISRTPSKIEAPLKIQAFFQVFNFKN 130

[Close]

BLAST of MELO3C035041 vs. ExPASy TrEMBL
Match: A0A5D3C3J8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 37/44 (84.09%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 26 LSSKTPTSRTPLKVEAPLKIQAFFQDSNFKNITCFASLNQAQAS 70
          LSSKTPTSRTP K EAPLKIQAFF+DSNFKNITCFAS NQ   S
Sbjct: 33 LSSKTPTSRTPSKFEAPLKIQAFFEDSNFKNITCFASSNQVGTS 76

[Close]

BLAST of MELO3C035041 vs. ExPASy TrEMBL
Match: A0A5A7UG56 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00780 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 19  FDNNKYSLSSKTPTSRTPLKVEAPLKIQAFFQDSNFKNITCFASLNQAQASS--RERIRG 78
           F +    LSSK+ TSRTP K+EA  KIQ FFQDSNFKNITCFAS NQA++    +E+ +G
Sbjct: 57  FSHRGSKLSSKSSTSRTPSKIEASSKIQPFFQDSNFKNITCFASSNQARSKGIIQEQDQG 116

[Close]

BLAST of MELO3C035041 vs. ExPASy TrEMBL
Match: A0A5D3BQI1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69G00070 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.7e-04
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 23  KYSLSSKTPTSRTPLKVEAPLKIQAFFQDSNFKN 57
           ++ LSSKTP SRTP K+EAPLKIQAFFQ  NFKN
Sbjct: 97  QHYLSSKTPISRTPSKIEAPLKIQAFFQVFNFKN 130

The following BLAST results are available for this feature:

BLAST of MELO3C035041 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035041 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05006.1	3.2e-10	84.09	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054154.1	7.9e-09	61.29	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047202.1	7.6e-04	76.47	hypothetical protein E6C27_scaffold83G00860 [Cucumis melo var. makuwa] >TYK01320...	[more]

BLAST of MELO3C035041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3J8	1.6e-10	84.09	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UG56	3.8e-09	61.29	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BQI1	3.7e-04	76.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C035041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035041.1	MELO3C035041.1	mRNA