Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCACCTTCAAAGAATACGCCACCTTTTAAGGGTAAGCACTACAAGAGCATTCCATTTTGTTGCCTGTTCAAGAGAGTTGTCATTTAGATGCGACTACTAATGAAAATCTTCACATTCCATTGAACATTCCTGCTCGAAGTGCACATGCAGGTAAGTCCTCTGACCCAGTATCGCCAATTACTGTAAAGAAGGAGGTTTTTGATGTCTCTCTACCACAAACCACTTAACCATATGCTTCGTCCTCTATTCCGAGACCTAGGGTTTCAATTGAAACAGTGGTTCTAGATTTCGATTCATCGGATGGTGATGACTCTATTGTTCTCTCGAAGCTTCTTCATCGGTTTAAGCTTGGGAATTGATCTGGTACTTTGTCCCCTCCAGCTCCAACTGTCCAAGGTTCTCGTTCACCGTCTCGTGCTGTTTCACCTCCTCGAGATATACCTTCACGGTCTACAAATCGTGGTAAGTTCTCTATTACCCCACCGTCTCCTCCATCCCTACACGAATCATTTCAAACTGATGATGACGAGACAAGTGATGATATTAACGAGGACTACGTCCCTATCTCCGAAAAAACTCCCACACCAAAAGAAACCACTGTCTCTGTTGATGATCCTACTTCTTCTCCTGACAATCGAACGTCTGAGCCTCTGTCAACTGAGGTGCTTGGTGAATCTTCCAAACCACTGTTACCTCAAGGTCATGTTGGTTTTTCCTTCAGACCTCAACGTCTCCCAGTCAAAAGGCAACGAGTAGTGTCCACCAAGGCGGGTCGTCGGAAGATACCTCCAAATGTTCCCTCTGTGCCAATTGATGGTATGTCCTTTCATTCTGAGGAAGGGGCTCACAAGTGTAAGTATGTAGTCAGACGGCGCATTGCTGATGAGTCGAGCATCTCTGACTAG
mRNA sequence
ATGGCTTCATCACCTTCAAAGAATACGCCACCTTTTAAGGAGAGTTGTCATTTAGATGCGACTACTAATGAAAATCTTCACATTCCATTGAACATTCCTGCTCGAAGTGCACATGCAGCTCCAACTGTCCAAGGTTCTCGTTCACCGTCTCGTGCTGTTTCACCTCCTCGAGATATACCTTCACGGTCTACAAATCGTGGTAAGTTCTCTATTACCCCACCGTCTCCTCCATCCCTACACGAATCATTTCAAACTGATGATGACGAGACAAGTGATGATATTAACGAGGACTACGTCCCTATCTCCGAAAAAACTCCCACACCAAAAGAAACCACTGTCTCTGTTGATGATCCTACTTCTTCTCCTGACAATCGAACGTCTGAGCCTCTGTCAACTGAGGTGCTTGGTGAATCTTCCAAACCACTGTTACCTCAAGGTCATGTTGGTTTTTCCTTCAGACCTCAACGTCTCCCAGTCAAAAGGCAACGAGTAGTGTCCACCAAGGCGGGTCGTCGGAAGATACCTCCAAATGTTCCCTCTGTGCCAATTGATGGTATGTCCTTTCATTCTGAGGAAGGGGCTCACAAGTGTAAGTATGTAGTCAGACGGCGCATTGCTGATGAGTCGAGCATCTCTGACTAG
Coding sequence (CDS)
ATGGCTTCATCACCTTCAAAGAATACGCCACCTTTTAAGGAGAGTTGTCATTTAGATGCGACTACTAATGAAAATCTTCACATTCCATTGAACATTCCTGCTCGAAGTGCACATGCAGCTCCAACTGTCCAAGGTTCTCGTTCACCGTCTCGTGCTGTTTCACCTCCTCGAGATATACCTTCACGGTCTACAAATCGTGGTAAGTTCTCTATTACCCCACCGTCTCCTCCATCCCTACACGAATCATTTCAAACTGATGATGACGAGACAAGTGATGATATTAACGAGGACTACGTCCCTATCTCCGAAAAAACTCCCACACCAAAAGAAACCACTGTCTCTGTTGATGATCCTACTTCTTCTCCTGACAATCGAACGTCTGAGCCTCTGTCAACTGAGGTGCTTGGTGAATCTTCCAAACCACTGTTACCTCAAGGTCATGTTGGTTTTTCCTTCAGACCTCAACGTCTCCCAGTCAAAAGGCAACGAGTAGTGTCCACCAAGGCGGGTCGTCGGAAGATACCTCCAAATGTTCCCTCTGTGCCAATTGATGGTATGTCCTTTCATTCTGAGGAAGGGGCTCACAAGTGTAAGTATGTAGTCAGACGGCGCATTGCTGATGAGTCGAGCATCTCTGACTAG
Protein sequence
MASSPSKNTPPFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIPSRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTSSPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPSVPIDGMSFHSEEGAHKCKYVVRRRIADESSISD
Homology
BLAST of MELO3C021847 vs. NCBI nr
Match:
TYK06511.1 (putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 364.4 bits (934), Expect = 6.8e-97
Identity = 190/196 (96.94%), Postives = 190/196 (96.94%), Query Frame = 0
Query: 1 MASSPSKNTPPFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIP 60
MASSPSKNTPPFK DATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIP
Sbjct: 226 MASSPSKNTPPFK-----DATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIP 285
Query: 61 SRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTS 120
SRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTS
Sbjct: 286 SRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTS 345
Query: 121 SPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPS 180
SPDNRTSEPLSTEVLGESSKPLLPQGHVGFSF PQRLPVKRQRVVSTKAGRRKIPPNVPS
Sbjct: 346 SPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFGPQRLPVKRQRVVSTKAGRRKIPPNVPS 405
Query: 181 VPIDGMSFHSEEGAHK 197
VPIDGMSFHSEEGAHK
Sbjct: 406 VPIDGMSFHSEEGAHK 416
BLAST of MELO3C021847 vs. NCBI nr
Match:
KAA0058484.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 179.9 bits (455), Expect = 2.4e-41
Identity = 107/208 (51.44%), Postives = 132/208 (63.46%), Query Frame = 0
Query: 11 PFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGS-----RSPSRAVSPPRDIPSRSTN 70
PFK+ A T+ H L P R + + SPS SP +D+PSR+T+
Sbjct: 25 PFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFDSSDVLHSPSWVASPRKDVPSRTTD 84
Query: 71 RGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTSSPDNR 130
GK S TP P S S TDDDE SDDI+EDYVP++++T +ET S +D SSPDNR
Sbjct: 85 HGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNR 144
Query: 131 TSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPSVPIDG 190
T EP ST+ GESS + P HVG S RP R V+ QRVVSTK G RKIP N+P + IDG
Sbjct: 145 TPEPQSTKAPGESSISMSPLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDG 204
Query: 191 MSFHSEEGAHKCKYVVRRRIADESSISD 214
+SFHSEEGAHK KYVV+R I DE+++SD
Sbjct: 205 VSFHSEEGAHKWKYVVKRCIVDEANLSD 232
BLAST of MELO3C021847 vs. NCBI nr
Match:
XP_008464024.1 (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])
HSP 1 Score: 172.6 bits (436), Expect = 3.8e-39
Identity = 105/203 (51.72%), Postives = 129/203 (63.55%), Query Frame = 0
Query: 11 PFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIPSRSTNRGKFS 70
PFK+ A T+ H L P R + TV S + D+PSR+T+ GK S
Sbjct: 17 PFKKIRRSVAATDATQHSLLKNPVRV--SVETVVLDFDSSDGID--NDVPSRTTDHGKSS 76
Query: 71 ITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTSSPDNRTSEPL 130
TP P S S TDDDE SDDI+EDYVP++++T +ET S +D SSPDNRT EP
Sbjct: 77 ATPSFPASPQVSLPTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQ 136
Query: 131 STEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPSVPIDGMSFHS 190
ST+ GESS + P HVG S RP R V+ QRVVSTK G RKIP N+P + IDG+SFHS
Sbjct: 137 STKAPGESSISMSPLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHS 196
Query: 191 EEGAHKCKYVVRRRIADESSISD 214
EEGAHK KYVV+R I DE+++SD
Sbjct: 197 EEGAHKWKYVVKRCIVDEANLSD 215
BLAST of MELO3C021847 vs. NCBI nr
Match:
KAA0062468.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 149.4 bits (376), Expect = 3.4e-32
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 46 SRSPSRAVSPPRDIPSRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKT 105
S SP R S +++P R+T++GK S P P +S TD D+ SD+ +EDYV +E+T
Sbjct: 601 SSSPPRDASLSKEVPPRTTDQGKSSAAPSYLP---DSLPTDVDDASDETDEDYVLGTEET 660
Query: 106 PTPKETTVSVDDPTSSPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVV 165
P+ET+ S + SS +NR EP S E ESS P+ P HVG S P+R PVK RV+
Sbjct: 661 TVPEETSTSSEASVSSSENRPLEPRSPEGSRESSIPMSPPRHVGSSSGPRRPPVKGHRVI 720
Query: 166 STKAGRRKIPPNVPSVPIDGMSFHSEEGAHKCKYVVRRRIADESSISD 214
STKA +RKIP NVPS IDG+SFHSEE AHK KYVV+RRIADE++ISD
Sbjct: 721 STKADQRKIPLNVPSFLIDGVSFHSEEDAHKWKYVVKRRIADEANISD 765
BLAST of MELO3C021847 vs. NCBI nr
Match:
TYK27414.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 149.4 bits (376), Expect = 3.4e-32
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 46 SRSPSRAVSPPRDIPSRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKT 105
S SP R S +++P R+T++GK S P P +S TD D+ SD+ +EDYV +E+T
Sbjct: 594 SSSPPRDASLSKEVPPRTTDQGKSSAAPSYLP---DSLPTDVDDASDETDEDYVLGTEET 653
Query: 106 PTPKETTVSVDDPTSSPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVV 165
P+ET+ S + SS +NR EP S E ESS P+ P HVG S P+R PVK RV+
Sbjct: 654 TVPEETSTSSEASVSSSENRPLEPRSPEGSRESSIPMSPPRHVGSSSGPRRPPVKGHRVI 713
Query: 166 STKAGRRKIPPNVPSVPIDGMSFHSEEGAHKCKYVVRRRIADESSISD 214
STKA +RKIP NVPS IDG+SFHSEE AHK KYVV+RRIADE++ISD
Sbjct: 714 STKADQRKIPLNVPSFLIDGVSFHSEEDAHKWKYVVKRRIADEANISD 758
BLAST of MELO3C021847 vs. ExPASy TrEMBL
Match:
A0A5D3C3N3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00430 PE=4 SV=1)
HSP 1 Score: 364.4 bits (934), Expect = 3.3e-97
Identity = 190/196 (96.94%), Postives = 190/196 (96.94%), Query Frame = 0
Query: 1 MASSPSKNTPPFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIP 60
MASSPSKNTPPFK DATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIP
Sbjct: 226 MASSPSKNTPPFK-----DATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIP 285
Query: 61 SRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTS 120
SRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTS
Sbjct: 286 SRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTS 345
Query: 121 SPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPS 180
SPDNRTSEPLSTEVLGESSKPLLPQGHVGFSF PQRLPVKRQRVVSTKAGRRKIPPNVPS
Sbjct: 346 SPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFGPQRLPVKRQRVVSTKAGRRKIPPNVPS 405
Query: 181 VPIDGMSFHSEEGAHK 197
VPIDGMSFHSEEGAHK
Sbjct: 406 VPIDGMSFHSEEGAHK 416
BLAST of MELO3C021847 vs. ExPASy TrEMBL
Match:
A0A5D3C7L1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001600 PE=4 SV=1)
HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 107/208 (51.44%), Postives = 132/208 (63.46%), Query Frame = 0
Query: 11 PFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGS-----RSPSRAVSPPRDIPSRSTN 70
PFK+ A T+ H L P R + + SPS SP +D+PSR+T+
Sbjct: 25 PFKKIRRSVAATDATQHSLLKNPVRVSVETVVLDFDSSDVLHSPSWVASPRKDVPSRTTD 84
Query: 71 RGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTSSPDNR 130
GK S TP P S S TDDDE SDDI+EDYVP++++T +ET S +D SSPDNR
Sbjct: 85 HGKSSATPSFPASPQVSLPTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNR 144
Query: 131 TSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPSVPIDG 190
T EP ST+ GESS + P HVG S RP R V+ QRVVSTK G RKIP N+P + IDG
Sbjct: 145 TPEPQSTKAPGESSISMSPLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDG 204
Query: 191 MSFHSEEGAHKCKYVVRRRIADESSISD 214
+SFHSEEGAHK KYVV+R I DE+++SD
Sbjct: 205 VSFHSEEGAHKWKYVVKRCIVDEANLSD 232
BLAST of MELO3C021847 vs. ExPASy TrEMBL
Match:
A0A1S3CL10 (uncharacterized protein LOC103502008 OS=Cucumis melo OX=3656 GN=LOC103502008 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 105/203 (51.72%), Postives = 129/203 (63.55%), Query Frame = 0
Query: 11 PFKESCHLDATTNENLHIPLNIPARSAHAAPTVQGSRSPSRAVSPPRDIPSRSTNRGKFS 70
PFK+ A T+ H L P R + TV S + D+PSR+T+ GK S
Sbjct: 17 PFKKIRRSVAATDATQHSLLKNPVRV--SVETVVLDFDSSDGID--NDVPSRTTDHGKSS 76
Query: 71 ITPPSPPSLHESFQTDDDETSDDINEDYVPISEKTPTPKETTVSVDDPTSSPDNRTSEPL 130
TP P S S TDDDE SDDI+EDYVP++++T +ET S +D SSPDNRT EP
Sbjct: 77 ATPSFPASPQVSLPTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQ 136
Query: 131 STEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVVSTKAGRRKIPPNVPSVPIDGMSFHS 190
ST+ GESS + P HVG S RP R V+ QRVVSTK G RKIP N+P + IDG+SFHS
Sbjct: 137 STKAPGESSISMSPLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHS 196
Query: 191 EEGAHKCKYVVRRRIADESSISD 214
EEGAHK KYVV+R I DE+++SD
Sbjct: 197 EEGAHKWKYVVKRCIVDEANLSD 215
BLAST of MELO3C021847 vs. ExPASy TrEMBL
Match:
A0A5D3DV74 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001030 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 46 SRSPSRAVSPPRDIPSRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKT 105
S SP R S +++P R+T++GK S P P +S TD D+ SD+ +EDYV +E+T
Sbjct: 594 SSSPPRDASLSKEVPPRTTDQGKSSAAPSYLP---DSLPTDVDDASDETDEDYVLGTEET 653
Query: 106 PTPKETTVSVDDPTSSPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVV 165
P+ET+ S + SS +NR EP S E ESS P+ P HVG S P+R PVK RV+
Sbjct: 654 TVPEETSTSSEASVSSSENRPLEPRSPEGSRESSIPMSPPRHVGSSSGPRRPPVKGHRVI 713
Query: 166 STKAGRRKIPPNVPSVPIDGMSFHSEEGAHKCKYVVRRRIADESSISD 214
STKA +RKIP NVPS IDG+SFHSEE AHK KYVV+RRIADE++ISD
Sbjct: 714 STKADQRKIPLNVPSFLIDGVSFHSEEDAHKWKYVVKRRIADEANISD 758
BLAST of MELO3C021847 vs. ExPASy TrEMBL
Match:
A0A5A7V4G0 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00570 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32
Identity = 90/168 (53.57%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 46 SRSPSRAVSPPRDIPSRSTNRGKFSITPPSPPSLHESFQTDDDETSDDINEDYVPISEKT 105
S SP R S +++P R+T++GK S P P +S TD D+ SD+ +EDYV +E+T
Sbjct: 601 SSSPPRDASLSKEVPPRTTDQGKSSAAPSYLP---DSLPTDVDDASDETDEDYVLGTEET 660
Query: 106 PTPKETTVSVDDPTSSPDNRTSEPLSTEVLGESSKPLLPQGHVGFSFRPQRLPVKRQRVV 165
P+ET+ S + SS +NR EP S E ESS P+ P HVG S P+R PVK RV+
Sbjct: 661 TVPEETSTSSEASVSSSENRPLEPRSPEGSRESSIPMSPPRHVGSSSGPRRPPVKGHRVI 720
Query: 166 STKAGRRKIPPNVPSVPIDGMSFHSEEGAHKCKYVVRRRIADESSISD 214
STKA +RKIP NVPS IDG+SFHSEE AHK KYVV+RRIADE++ISD
Sbjct: 721 STKADQRKIPLNVPSFLIDGVSFHSEEDAHKWKYVVKRRIADEANISD 765
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK06511.1 | 6.8e-97 | 96.94 | putative mitochondrial protein [Cucumis melo var. makuwa] | [more] |
| KAA0058484.1 | 2.4e-41 | 51.44 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07262.1 flocculat... | [more] |
| XP_008464024.1 | 3.8e-39 | 51.72 | PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo] | [more] |
| KAA0062468.1 | 3.4e-32 | 53.57 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
| TYK27414.1 | 3.4e-32 | 53.57 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3C3N3 | 3.3e-97 | 96.94 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5D3C7L1 | 1.1e-41 | 51.44 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S3CL10 | 1.8e-39 | 51.72 | uncharacterized protein LOC103502008 OS=Cucumis melo OX=3656 GN=LOC103502008 PE=... | [more] |
| A0A5D3DV74 | 1.7e-32 | 53.57 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A5A7V4G0 | 1.7e-32 | 53.57 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
