MELO3C000609.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C000609.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	HMG-Y-related protein A
Location	chr09: 18944938 .. 18945771 (-)
Sequence length	741
RNA-Seq Expression	MELO3C000609.1
Synteny	MELO3C000609.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTCTCTCTCTCTCTAGAATCACATCATCTAAGCCATCTCCTCTGCGACCATGGCTACCGACGACCAACTCAACAACCCACCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGGTACTTCAATTTCTCTTTCTTTCTATTTCTCGCTCTCTGCCATTTCTTTAATTTTCTTTTTAACTTTAATTTCCGTGAAATTTCTTTCCACAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACAAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACTCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGGCGTCCACCCAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCCCCACGCCCACGTGGCCGTCCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACTACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAATACCCCAAACCGGCCCCCACCTCTGCTCCTCCCGTCGCCGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCAGCCGTGGCCCCTGTTGGTTGTTGAACGGAACGAAACTAAAAACAGAGGATGAGAGAGAGAGAAATAGAAATTAGAGAGAGAGAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTG

mRNA sequence

TCCCTCTCTCTCTCTCTAGAATCACATCATCTAAGCCATCTCCTCTGCGACCATGGCTACCGACGACCAACTCAACAACCCACCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACAAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACTCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGGCGTCCACCCAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCCCCACGCCCACGTGGCCGTCCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACTACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAATACCCCAAACCGGCCCCCACCTCTGCTCCTCCCGTCGCCGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCAGCCGTGGCCCCTGTTGGTTGTTGAACGGAACGAAACTAAAAACAGAGGATGAGAGAGAGAGAAATAGAAATTAGAGAGAGAGAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTG

Coding sequence (CDS)

ATGGCTACCGACGACCAACTCAACAACCCACCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACAAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACTCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGGCGTCCACCCAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCCCCACGCCCACGTGGCCGTCCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACTACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAATACCCCAAACCGGCCCCCACCTCTGCTCCTCCCGTCGCCGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCAGCCGTGGCCCCTGTTGGTTGTTGA

Protein sequence

MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC

Homology

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BLAST of MELO3C000609.1 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related protein A [Cucumis melo var. makuwa] >TYK30498.1 HMG-Y-related protein A [Cucumis melo var. makuwa])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

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BLAST of MELO3C000609.1 vs. NCBI nr
Match: XP_004150116.1 (HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_008586 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 185/186 (99.46%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

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BLAST of MELO3C000609.1 vs. NCBI nr
Match: XP_038906720.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.0e-93
Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIM AI+SLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  STLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTT GSGRPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTPGSGRPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 185

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BLAST of MELO3C000609.1 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016774.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 173/186 (93.01%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAP+GC
Sbjct: 181 VAPIGC 186

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BLAST of MELO3C000609.1 vs. NCBI nr
Match: XP_023550058.1 (HMG-Y-related protein A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 173/186 (93.01%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MVTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAP+GC
Sbjct: 181 VAPIGC 186

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BLAST of MELO3C000609.1 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 113/184 (61.41%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT++   N PQ      SLP YPEMI+  +++LN+ NG +KSAI+K IE+TYG+LP A 
Sbjct: 1   MATEEV--NKPQ------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RP  PKDP AP   PK K T GSGRPRGRP K P+    +AP      R RGRPPKVKP 
Sbjct: 121 RP--PKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPV 185
           +  V
Sbjct: 181 LTEV 172

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BLAST of MELO3C000609.1 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 115/189 (60.85%), Postives = 132/189 (69.84%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AI+SLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK------PAPTSAPPVAGPPRGRGRPPKVK 187
           PKDP  P   P++K  +GSGRPRGRPPK P+       AP  A    G  RGRGRPPKVK
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 198

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BLAST of MELO3C000609.1 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-39
Identity = 94/152 (61.84%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 33  SLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAP 92
           +LN+ +G +KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP  PKDP AP   PK K T  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 YPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPV 185
             +     +P      R RGRPPKVKP +  V
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

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BLAST of MELO3C000609.1 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-34
Identity = 102/197 (51.78%), Postives = 126/197 (63.96%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATD+     P PP        YPEMI+AAI+ L+DK+G +KSAI+K IE  YG LPPA 
Sbjct: 1   MATDEATKPSPIPP--------YPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSP 120
            +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK   P  P P P +  S 
Sbjct: 61  ASLLTAHLARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSST 120

Query: 121 PRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPK------PAPTSAPPVAGP-- 180
            R RGRPPK K   +P+    K+ T+G  +PRGRPPK  K      P+P+ AP  AG   
Sbjct: 121 GRGRGRPPKAK---SPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGS 180

Query: 181 ---PRGRGRPPKVKPAV 182
               RGRGRPPKV+PAV
Sbjct: 181 TPGKRGRGRPPKVRPAV 186

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BLAST of MELO3C000609.1 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.2e-05
Identity = 59/180 (32.78%), Postives = 85/180 (47.22%), Query Frame = 0


Query: 19  SLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLL 78
           S P + EMI  AI +L ++ G S+ AI K +E  +  LP  F  LL  HL  +  +G+L+
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLV 109

Query: 79  FVKNNYMKPDPNAPPKRGRGRP---PKPKVPLPPGTVVSPPRPRGR---------PPKPK 138
            VKN++  P   A P     +    PKPKV   P T     +P+ +           K  
Sbjct: 110 KVKNSFKLPSARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTKTV 169

Query: 139 DPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRP-PKVKPAVAPVG 186
               P ++PK KT   +G+P+    K  K A T+A  VA P + +  P  KVK   +P G
Sbjct: 170 AKKIPAAKPKAKT---AGKPKTVAAKPAKVAKTAA--VASPGKKKAVPVKKVKTVKSPAG 224

[Close]

BLAST of MELO3C000609.1 vs. ExPASy TrEMBL
Match: A0A5D3E3W3 (HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00410 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.8e-98
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

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BLAST of MELO3C000609.1 vs. ExPASy TrEMBL
Match: A0A1S3CSD8 (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.8e-98
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of MELO3C000609.1 vs. ExPASy TrEMBL
Match: A0A0A0KPG4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.5e-98
Identity = 185/186 (99.46%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of MELO3C000609.1 vs. ExPASy TrEMBL
Match: A0A6J1FDA7 (HMG-Y-related protein A OS=Cucurbita moschata OX=3662 GN=LOC111444711 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.0e-92
Identity = 173/186 (93.01%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           M T+DQLNNPPQPPPPAPSLPHYPEMIM AI++LNDKNGVSK+AITKQIESTYGDLPPAF
Sbjct: 1   MGTEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDKNGVSKTAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAP+GC
Sbjct: 181 VAPIGC 186

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BLAST of MELO3C000609.1 vs. ExPASy TrEMBL
Match: A0A6J1I8X7 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111472076 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 172/186 (92.47%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60
           MAT+DQLNNPPQPPPPAPSLPHYPEMIM AI++LND NGVSK+AITKQIES YGDLPPAF
Sbjct: 1   MATEDQLNNPPQPPPPAPSLPHYPEMIMTAIEALNDINGVSKTAITKQIESIYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLL HHLDVMKQTG+LLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVV PPRPRG
Sbjct: 61  TTLLAHHLDVMKQTGKLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVPPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKKT++GSGRPRGRPPK PKPAPTSAPPVAGPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTSTGSGRPRGRPPKSPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 187
           VAP+GC
Sbjct: 181 VAPIGC 186

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BLAST of MELO3C000609.1 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 184.5 bits (467), Expect = 7.8e-47
Identity = 115/189 (60.85%), Postives = 132/189 (69.84%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AI+SLNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ VKNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKTTSGSGRPRGRPPKYPK------PAPTSAPPVAGPPRGRGRPPKVK 187
           PKDP  P   P++K  +GSGRPRGRPPK P+       AP  A    G  RGRGRPPKVK
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 198

[Close]

BLAST of MELO3C000609.1 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-10
Identity = 72/203 (35.47%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 11  PQPP----PPAPSLPH--YPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI AAI +LN+ +G SK AI++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  THHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
           THHL  +K +G L  VK +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVSP-PRPRGRPPKPKDPF--APISQ-PKKKTTSGSGRPRGRPPKYPKPAPTSAPPV 185
            G+   P  R RGRPPKPK      P+ Q P       +G+P     +   P P   P  
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

[Close]

BLAST of MELO3C000609.1 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-10
Identity = 76/211 (36.02%), Postives = 91/211 (43.13%), Query Frame = 0


Query: 2   ATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFT 61
           A   Q    P PP P+ S P Y +MI  AI +LN+ +G SK AI++ IE  Y  +P A  
Sbjct: 57  APPQQPQTSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHG 116

Query: 62  TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP---------------PKPKVP 121
            LLTHHL  +K +G L+ VK +Y       PP      P               P P   
Sbjct: 117 ALLTHHLKTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPV 176

Query: 122 LPPGTVVSPPRPRGRPPKPKDPFAPISQP---KKKTTSGSGRPRGR-------PPKYP-- 181
           L   T  +  R RGRPPK K P     QP    K T   S  P  R       PP+ P  
Sbjct: 177 LASSTPQTIKRGRGRPPKAK-PDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQ 236

Query: 182 KPAPTSAPPVAGPPRGRGRPPKVKPAVAPVG 186
              P   PP  G PR  G  P VKPA +  G
Sbjct: 237 PQQPVKRPP--GRPRKDGTSPTVKPAASVSG 264

The following BLAST results are available for this feature:

BLAST of MELO3C000609.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466945.1	1.2e-97	100.00	PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related pr...	[more]
XP_004150116.1	1.6e-97	99.46	HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_0...	[more]
XP_038906720.1	1.0e-93	97.31	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_022938491.1	1.7e-91	93.01	HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein...	[more]
XP_023550058.1	1.7e-91	93.01	HMG-Y-related protein A [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C000609.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	1.5e-47	61.41	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	1.1e-45	60.85	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q10370	2.0e-39	61.84	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FYS5	2.5e-34	51.78	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
Q9M5W4	7.2e-05	32.78	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]

BLAST of MELO3C000609.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3W3	5.8e-98	100.00	HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSD8	5.8e-98	100.00	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
A0A0A0KPG4	7.5e-98	99.46	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV...	[more]
A0A6J1FDA7	8.0e-92	93.01	HMG-Y-related protein A OS=Cucurbita moschata OX=3662 GN=LOC111444711 PE=4 SV=1	[more]
A0A6J1I8X7	1.2e-90	92.47	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111472076 PE=4 SV...	[more]

BLAST of MELO3C000609.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	7.8e-47	60.85	high mobility group A	[more]
AT3G18035.1	3.4e-10	35.47	winged-helix DNA-binding transcription factor family protein	[more]
AT1G48620.1	7.6e-10	36.02	high mobility group A5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 186..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..186
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..184
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 94..104 score: 77.27 coord: 142..152 score: 69.32 coord: 114..125 score: 65.97
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 168..180 e-value: 1.1 score: 15.1 coord: 116..128 e-value: 23.0 score: 7.6 coord: 144..156 e-value: 2.2 score: 13.3 coord: 94..106 e-value: 11.0 score: 9.3
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 65.93 coord: 107..118 score: 41.67 coord: 133..152 score: 49.29 coord: 118..129 score: 50.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 e-value: 2.0E-20 score: 83.8
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..82 e-value: 4.4E-10 score: 39.8
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 19..88 score: 22.243177
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 16..97 e-value: 1.9E-13 score: 52.3
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..184
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 15..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C000609	MELO3C000609	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C000609.1:exon:276089	MELO3C000609.1:exon:276089	exon
MELO3C000609.1:exon:276088	MELO3C000609.1:exon:276088	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C000609.1:three_prime_utr	MELO3C000609.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C000609.1:cds	MELO3C000609.1:cds	CDS
MELO3C000609.1:cds	MELO3C000609.1:cds_2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C000609.1:five_prime_utr	MELO3C000609.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C000609.1	MELO3C000609.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding