Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAATACCAACACAATTCCTGGATTTTCTATTAAGAAAACAATGTCATACAAAAAAAACTAATGTCCTTGCTTTCAACTTTAATGGACATATAGCAGAATTTGAGCTGAAAGAATTTTGTTTTGTGATTGGACTAAAAGGTCACAAATTCCTTGAGTTAAATCTAGGAAAAGGAAAAGAAAATGGTTTGAAAAATGCCCTTTTCCGTCATGATGACTTTATAACAAGAAGAGATATAGAAAGAACTTTCAAAGCGTTGTGCAACAAGGAAGATTGGTTGAAAGAAAAACTAGTTAACTTCTATATCTTAGAAGCATTTTTAATTCCCAAGCAATACAACCACATAAATCTCCAACATCTAGACATATTGGATGATGAAGAAACCTTCAAAGACTATCCTTGGGGAAGGCTATTATACATCCTAACATATCAATTCTTGAAAAAAGCATCCTACAGTGACAAGGATACTGTATACCTTCAAAGGTTTCCCCTAGCCTTAGTCTATTGGGCTTTTGAGAAAATATCAAGACTTTCCAATTTAGATGTTGGGTTTGGAAGAAAGCTTGCAATTGAAGGGCCACCAATTGTAACATGGGATGTTTGGAAACTAGTGACTGGAGGACTCTAA
mRNA sequence
ATGGCCAAAATACCAACACAATTCCTGGATTTTCTATTAAGAAAACAATGTCATACAAAAAAAACTAATGTCCTTGCTTTCAACTTTAATGGACATATAGCAGAATTTGAGCTGAAAGAATTTTGTTTTGTGATTGGACTAAAAGGTCACAAATTCCTTGAGTTAAATCTAGGAAAAGGAAAAGAAAATGGTTTGAAAAATGCCCTTTTCCGTCATGATGACTTTATAACAAGAAGAGATATAGAAAGAACTTTCAAAGCGTTGTGCAACAAGGAAGATTGGTTGAAAGAAAAACTAGTTAACTTCTATATCTTAGAAGCATTTTTAATTCCCAAGCAATACAACCACATAAATCTCCAACATCTAGACATATTGGATGATGAAGAAACCTTCAAAGACTATCCTTGGGGAAGGCTATTATACATCCTAACATATCAATTCTTGAAAAAAGCATCCTACAGTGACAAGGATACTGTATACCTTCAAAGGTTTCCCCTAGCCTTAGTCTATTGGGCTTTTGAGAAAATATCAAGACTTTCCAATTTAGATGTTGGGTTTGGAAGAAAGCTTGCAATTGAAGGGCCACCAATTGTAACATGGGATGTTTGGAAACTAGTGACTGGAGGACTCTAA
Coding sequence (CDS)
ATGGCCAAAATACCAACACAATTCCTGGATTTTCTATTAAGAAAACAATGTCATACAAAAAAAACTAATGTCCTTGCTTTCAACTTTAATGGACATATAGCAGAATTTGAGCTGAAAGAATTTTGTTTTGTGATTGGACTAAAAGGTCACAAATTCCTTGAGTTAAATCTAGGAAAAGGAAAAGAAAATGGTTTGAAAAATGCCCTTTTCCGTCATGATGACTTTATAACAAGAAGAGATATAGAAAGAACTTTCAAAGCGTTGTGCAACAAGGAAGATTGGTTGAAAGAAAAACTAGTTAACTTCTATATCTTAGAAGCATTTTTAATTCCCAAGCAATACAACCACATAAATCTCCAACATCTAGACATATTGGATGATGAAGAAACCTTCAAAGACTATCCTTGGGGAAGGCTATTATACATCCTAACATATCAATTCTTGAAAAAAGCATCCTACAGTGACAAGGATACTGTATACCTTCAAAGGTTTCCCCTAGCCTTAGTCTATTGGGCTTTTGAGAAAATATCAAGACTTTCCAATTTAGATGTTGGGTTTGGAAGAAAGCTTGCAATTGAAGGGCCACCAATTGTAACATGGGATGTTTGGAAACTAGTGACTGGAGGACTCTAA
Protein sequence
MAKIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKGKENGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQYNHINLQHLDILDDEETFKDYPWGRLLYILTYQFLKKASYSDKDTVYLQRFPLALVYWAFEKISRLSNLDVGFGRKLAIEGPPIVTWDVWKLVTGGL
Homology
BLAST of MELO3C032772 vs. NCBI nr
Match:
KAA0038287.1 (DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa])
HSP 1 Score: 164.1 bits (414), Expect = 1.3e-36
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 113 QYNHINLQHLDILDDEETFKDYPWGRLLYILTYQFLKKASYSDKDTVYLQRFPLALVYWA 172
Q+NHINL HLDIL++EE FK YPWGRL YILTYQFLKKASY+DKD VYLQ FPLALVYWA
Sbjct: 234 QHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVYWA 293
Query: 173 FEKISRLSNLDVGFGRKLAIEGPPIVTWDVWK 205
EKI R SNLDVGFGRKLAIEGPPIVTW+ K
Sbjct: 294 LEKIPRFSNLDVGFGRKLAIEGPPIVTWECLK 325
BLAST of MELO3C032772 vs. NCBI nr
Match:
XP_024031030.1 (uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031032.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031033.1 uncharacterized protein LOC21394043 [Morus notabilis])
HSP 1 Score: 109.8 bits (273), Expect = 3.0e-20
Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 0
Query: 3 KIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKGKE 62
K P+Q + L+ +QC K N L F+ G I +F +KEF + GL + + + E
Sbjct: 138 KFPSQLIHHLILRQCPQAKKNELWFDIEGAIVKFGMKEFALITGLNCSNYPFIFEKQLPE 197
Query: 63 NGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINLQH 122
+ K FR + R + F+A D KL Y LE+ LIPK+ N+I+ H
Sbjct: 198 STTKRKFFRKGKSVQRIKLNDVFRANRGGTDEDIVKLAKLYCLESLLIPKKIENNIDPNH 257
Query: 123 LDILDDEETFKDYPWGRLLYILTYQFLKKASYSDKDTVY-LQRFPLALVYWAFEKISRLS 182
L ++D+ E F +YPWGRL Y +T ++K++ S + Y + FP A++ WA+E I L
Sbjct: 258 LKMVDNPELFDNYPWGRLSYEMTIAYIKRSIKSQEAEAYGIGGFPYAVIVWAYETIPTLI 317
Query: 183 NLDVGFGRKLAIEGPPIVTWD 202
++ +++ P I+ W+
Sbjct: 318 KKNI--AKRIGNGIPRIINWE 336
BLAST of MELO3C032772 vs. NCBI nr
Match:
XP_022132727.1 (uncharacterized protein LOC111005524 [Momordica charantia] >XP_022132728.1 uncharacterized protein LOC111005524 [Momordica charantia] >XP_022132729.1 uncharacterized protein LOC111005524 [Momordica charantia] >XP_022132730.1 uncharacterized protein LOC111005524 [Momordica charantia])
HSP 1 Score: 109.8 bits (273), Expect = 3.0e-20
Identity = 64/202 (31.68%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 1 MAKIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKG 60
+ K +Q L+R+QC +K N L FN G + +F +K+F + G+ + +++ K
Sbjct: 294 ITKFSSQLFYHLIRRQCSSKNPNELWFNLEGRVHKFGIKDFALITGMNCGELPTIDMSKI 353
Query: 61 KENGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINL 120
+ F + I R + F + D K+ YILE FL+ KQ IN
Sbjct: 354 QRAWFSKRYFGGERTIKRTKLPEIFMEMDKGRDKDVVKMAKLYILEMFLLGKQITTGINH 413
Query: 121 QHLDILDDEETFKDYPWGRLLYILTYQFLKKASYS-DKDTVYLQRFPLALVYWAFEKISR 180
++ ++DD+E F+ YPWGR+ Y +T F+KKA S D + + FP AL+ WA+E I
Sbjct: 414 EYTLLIDDDEQFEGYPWGRVSYEITIDFVKKAIKSNDASAIGIGGFPYALLVWAYETIPL 473
Query: 181 LSNLDVGFGRKLAIEGPPIVTW 201
LS F K++ P + W
Sbjct: 474 LSLNSNLFATKISSGMPRMNNW 495
BLAST of MELO3C032772 vs. NCBI nr
Match:
EXC30509.1 (hypothetical protein L484_010758 [Morus notabilis])
HSP 1 Score: 109.8 bits (273), Expect = 3.0e-20
Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 0
Query: 3 KIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKGKE 62
K P+Q + L+ +QC K N L F+ G I +F +KEF + GL + + + E
Sbjct: 138 KFPSQLIHHLILRQCPQAKKNELWFDIEGAIVKFGMKEFALITGLNCSNYPFIFEKQLPE 197
Query: 63 NGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINLQH 122
+ K FR + R + F+A D KL Y LE+ LIPK+ N+I+ H
Sbjct: 198 STTKRKFFRKGKSVQRIKLNDVFRANRGGTDEDIVKLAKLYCLESLLIPKKIENNIDPNH 257
Query: 123 LDILDDEETFKDYPWGRLLYILTYQFLKKASYSDKDTVY-LQRFPLALVYWAFEKISRLS 182
L ++D+ E F +YPWGRL Y +T ++K++ S + Y + FP A++ WA+E I L
Sbjct: 258 LKMVDNPELFDNYPWGRLSYEMTIAYIKRSIKSQEAEAYGIGGFPYAVIVWAYETIPTLI 317
Query: 183 NLDVGFGRKLAIEGPPIVTWD 202
++ +++ P I+ W+
Sbjct: 318 KKNI--AKRIGNGIPRIINWE 336
BLAST of MELO3C032772 vs. NCBI nr
Match:
TYK12922.1 (uncharacterized protein E5676_scaffold255G005170 [Cucumis melo var. makuwa])
HSP 1 Score: 106.3 bits (264), Expect = 3.3e-19
Identity = 61/202 (30.20%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 1 MAKIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKG 60
++K +Q L+R+QC +K + L FN G I +F +K+F + GL + +++ K
Sbjct: 680 VSKFSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKI 739
Query: 61 KENGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINL 120
++ F + I R + F + + K+ YILE F++ KQ IN
Sbjct: 740 QKGKFNKRYFGGEKTIRRTKLHEVFTEMDKGRNKDVVKMAKLYILEMFILGKQLRTGINH 799
Query: 121 QHLDILDDEETFKDYPWGRLLYILTYQFLKKASYS-DKDTVYLQRFPLALVYWAFEKISR 180
++ ++DD+E F YPWGR+ Y +T F+KKA S D + + FP AL WA+E I
Sbjct: 800 EYTLLIDDKEQFDSYPWGRISYEITIDFVKKAIKSNDASAIGVGGFPFALCVWAYETIPL 859
Query: 181 LSNLDVGFGRKLAIEGPPIVTW 201
L+ F +++ P + W
Sbjct: 860 LALNSNFFAMRISFGTPRMNNW 881
BLAST of MELO3C032772 vs. ExPASy TrEMBL
Match:
A0A5A7T9I0 (DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001480 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 6.4e-37
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 0
Query: 113 QYNHINLQHLDILDDEETFKDYPWGRLLYILTYQFLKKASYSDKDTVYLQRFPLALVYWA 172
Q+NHINL HLDIL++EE FK YPWGRL YILTYQFLKKASY+DKD VYLQ FPLALVYWA
Sbjct: 234 QHNHINLLHLDILNNEEIFKGYPWGRLSYILTYQFLKKASYNDKDVVYLQGFPLALVYWA 293
Query: 173 FEKISRLSNLDVGFGRKLAIEGPPIVTWDVWK 205
EKI R SNLDVGFGRKLAIEGPPIVTW+ K
Sbjct: 294 LEKIPRFSNLDVGFGRKLAIEGPPIVTWECLK 325
BLAST of MELO3C032772 vs. ExPASy TrEMBL
Match:
A0A6J1BX50 (uncharacterized protein LOC111005524 OS=Momordica charantia OX=3673 GN=LOC111005524 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 64/202 (31.68%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 1 MAKIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKG 60
+ K +Q L+R+QC +K N L FN G + +F +K+F + G+ + +++ K
Sbjct: 294 ITKFSSQLFYHLIRRQCSSKNPNELWFNLEGRVHKFGIKDFALITGMNCGELPTIDMSKI 353
Query: 61 KENGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINL 120
+ F + I R + F + D K+ YILE FL+ KQ IN
Sbjct: 354 QRAWFSKRYFGGERTIKRTKLPEIFMEMDKGRDKDVVKMAKLYILEMFLLGKQITTGINH 413
Query: 121 QHLDILDDEETFKDYPWGRLLYILTYQFLKKASYS-DKDTVYLQRFPLALVYWAFEKISR 180
++ ++DD+E F+ YPWGR+ Y +T F+KKA S D + + FP AL+ WA+E I
Sbjct: 414 EYTLLIDDDEQFEGYPWGRVSYEITIDFVKKAIKSNDASAIGIGGFPYALLVWAYETIPL 473
Query: 181 LSNLDVGFGRKLAIEGPPIVTW 201
LS F K++ P + W
Sbjct: 474 LSLNSNLFATKISSGMPRMNNW 495
BLAST of MELO3C032772 vs. ExPASy TrEMBL
Match:
W9SF50 (DUF1985 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_010758 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 64/201 (31.84%), Postives = 104/201 (51.74%), Query Frame = 0
Query: 3 KIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKGKE 62
K P+Q + L+ +QC K N L F+ G I +F +KEF + GL + + + E
Sbjct: 138 KFPSQLIHHLILRQCPQAKKNELWFDIEGAIVKFGMKEFALITGLNCSNYPFIFEKQLPE 197
Query: 63 NGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINLQH 122
+ K FR + R + F+A D KL Y LE+ LIPK+ N+I+ H
Sbjct: 198 STTKRKFFRKGKSVQRIKLNDVFRANRGGTDEDIVKLAKLYCLESLLIPKKIENNIDPNH 257
Query: 123 LDILDDEETFKDYPWGRLLYILTYQFLKKASYSDKDTVY-LQRFPLALVYWAFEKISRLS 182
L ++D+ E F +YPWGRL Y +T ++K++ S + Y + FP A++ WA+E I L
Sbjct: 258 LKMVDNPELFDNYPWGRLSYEMTIAYIKRSIKSQEAEAYGIGGFPYAVIVWAYETIPTLI 317
Query: 183 NLDVGFGRKLAIEGPPIVTWD 202
++ +++ P I+ W+
Sbjct: 318 KKNI--AKRIGNGIPRIINWE 336
BLAST of MELO3C032772 vs. ExPASy TrEMBL
Match:
A0A5D3CNI7 (TF-B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005170 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 61/202 (30.20%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 1 MAKIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKG 60
++K +Q L+R+QC +K + L FN G I +F +K+F + GL + +++ K
Sbjct: 680 VSKFSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKI 739
Query: 61 KENGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINL 120
++ F + I R + F + + K+ YILE F++ KQ IN
Sbjct: 740 QKGKFNKRYFGGEKTIRRTKLHEVFTEMDKGRNKDVVKMAKLYILEMFILGKQLRTGINH 799
Query: 121 QHLDILDDEETFKDYPWGRLLYILTYQFLKKASYS-DKDTVYLQRFPLALVYWAFEKISR 180
++ ++DD+E F YPWGR+ Y +T F+KKA S D + + FP AL WA+E I
Sbjct: 800 EYTLLIDDKEQFDSYPWGRISYEITIDFVKKAIKSNDASAIGVGGFPFALCVWAYETIPL 859
Query: 181 LSNLDVGFGRKLAIEGPPIVTW 201
L+ F +++ P + W
Sbjct: 860 LALNSNFFAMRISFGTPRMNNW 881
BLAST of MELO3C032772 vs. ExPASy TrEMBL
Match:
A0A1S3B0L9 (uncharacterized protein LOC103484737 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103484737 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 61/202 (30.20%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 1 MAKIPTQFLDFLLRKQCHTKKTNVLAFNFNGHIAEFELKEFCFVIGLKGHKFLELNLGKG 60
++K +Q L+R+QC +K + L FN G I +F +K+F + GL + +++ K
Sbjct: 588 VSKFSSQLFYHLIRRQCCSKNRHELWFNLEGRIHKFGMKDFALITGLNCGELPAIDMSKI 647
Query: 61 KENGLKNALFRHDDFITRRDIERTFKALCNKEDWLKEKLVNFYILEAFLIPKQY-NHINL 120
++ F + I R + F + + K+ YILE F++ KQ IN
Sbjct: 648 QKGKFNKRYFGGEKTIRRTKLHEVFTEMDKGRNKDVVKMAKLYILEMFILGKQLRTGINH 707
Query: 121 QHLDILDDEETFKDYPWGRLLYILTYQFLKKASYS-DKDTVYLQRFPLALVYWAFEKISR 180
++ ++DD+E F YPWGR+ Y +T F+KKA S D + + FP AL WA+E I
Sbjct: 708 EYTLLIDDKEQFDSYPWGRISYEITIDFVKKAIKSNDASAIGVGGFPFALCVWAYETIPL 767
Query: 181 LSNLDVGFGRKLAIEGPPIVTW 201
L+ F +++ P + W
Sbjct: 768 LALNSNFFAMRISFGTPRMNNW 789
BLAST of MELO3C032772 vs. TAIR 10
Match:
AT3G31910.1 (Domain of unknown function (DUF1985) )
HSP 1 Score: 42.0 bits (97), Expect = 7.0e-04
Identity = 24/75 (32.00%), Postives = 38/75 (50.67%), Query Frame = 0
Query: 127 DEETFKDYPWGRLLYILTYQFLKKASYSDKDTVYLQRFPLALVYWAFEKISRLSNLDVGF 186
D F+ YPWGR+ + +K Y DKD+ +QR ALV W +E + L + G
Sbjct: 139 DPVGFERYPWGRVAFESLINSVKIVDY-DKDSYVIQRCVHALVIWIYESVPGLGEI-YGM 198
Query: 187 GRKLAIEGPPIVTWD 202
R + + P++ W+
Sbjct: 199 KRDI-LTCIPLLDWN 210
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0038287.1 | 1.3e-36 | 82.61 | DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa] | [more] |
| XP_024031030.1 | 3.0e-20 | 31.84 | uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacte... | [more] |
| XP_022132727.1 | 3.0e-20 | 31.68 | uncharacterized protein LOC111005524 [Momordica charantia] >XP_022132728.1 uncha... | [more] |
| EXC30509.1 | 3.0e-20 | 31.84 | hypothetical protein L484_010758 [Morus notabilis] | [more] |
| TYK12922.1 | 3.3e-19 | 30.20 | uncharacterized protein E5676_scaffold255G005170 [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T9I0 | 6.4e-37 | 82.61 | DNA-directed RNA polymerase I subunit RPA1-like OS=Cucumis melo var. makuwa OX=1... | [more] |
| A0A6J1BX50 | 1.4e-20 | 31.68 | uncharacterized protein LOC111005524 OS=Momordica charantia OX=3673 GN=LOC111005... | [more] |
| W9SF50 | 1.4e-20 | 31.84 | DUF1985 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_010758 PE... | [more] |
| A0A5D3CNI7 | 1.6e-19 | 30.20 | TF-B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S3B0L9 | 1.6e-19 | 30.20 | uncharacterized protein LOC103484737 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G31910.1 | 7.0e-04 | 32.00 | Domain of unknown function (DUF1985) | [more] |
