MELO3C032723 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032723
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	chr07: 13991543 .. 13993379 (-)
RNA-Seq Expression	MELO3C032723
Synteny	MELO3C032723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATAAAATAGAAACATAACTAGTTAACGAAGTTACATCTAGTGGTTACTATTTCGTGGTCCGATCTTATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGGTACCCAGTCTTATCCCTATACTATAGACCCTTTAAGTTGTATCTCAAATATTACTCCATGTATGTCTCTACATATTGTTTCAGACTCATCAAACAACTTAGGATGTTAGTTTATTGGATTTAAGTTATTAAGAGATGATTCTTGCTAGTGGCACATGGCATAAGTCTCTACGAGAATTAGTGTTTAAAGACACAAGATGAGCAGAAAAAAACGTAGAGGATTCTATATGATGCGACTACGGGTTCTATCATGTATGCCATGCTATCTCACTTAACCAGATGTATCAAACATGCTGAGTTTGACTAGTAGATATCGATCAGATCAAGGTGAAGCACACTAGACAGCAGTGAAAAATATCCTTAAGTACTTAAGAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTAATTATTCTCAATTCTACTACATATGCAAAGTACCTACAAGTGATAATGTAGCAGATCCTTTGACTAAAACTCTTCCTCAATCAAAACATGATTATTATACTTGGAGCATGAGTATTAGATACTTAGCTAATTATATAGAGAGCAAGTGGGAGAACTGTTGGTTTTTTTATTGTGCTCTATAATAATTTTATGGTGTTGGAATTTGTGTCCTGGAACTCGTACTTTGTTATTTGATTCAATAAAATTTATTGTTAAATGCTATAATCTTAAAAACCAATAAATTTAGGTCCCGAGGCTATTTTATTGAGTTTGTCAAATACACTTGAATTTTATGTTAAGACATAAACATGGATTAAGTTCAAGTTAATAGCCTAAATAGTCTATAGTGTATGAATAAGGATGGGTGCCTTATTCAGAATAAACACTATGGATGCGGCCCACTCCGTAGTTAGTACAAACGATGTAATCTTGTATCGTTCATGTAGAGATATGAGAGTAGAGGTGTCCTATGTAAATGGTTTACATAAGACTGGAACCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATAAACTAACTATTTCAATTATGATGACCTAGGTAACTTGATCTTAATCATGAGCTAACTATGAACTTCTGTTCATTCGGTAGTATCCTTAAATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTAAGATCGAGTGGATAGCTAGGGACATAGGGTGCAAGATGGAATTCACTCATACCCACTTCTGGGATAGTAGATAGGTTGTTCCCTTAAGGACTGAATCCAAGTCTTGAACAAGGGGCCCCACCTTCTCATTGACCCGAGAAGGATTCTAGTTTATAGGTTGGACCTTAAACCAATTGTTCAATAGTGGATCAGTGGGTCTTAAGGAGCAAGATATAATCTTGGGGGTAAAAGGGTATTTTGACCCATCCAAGATTACGAACAACCTGTGAAGGATCGACTTACCTATTATGGTTATATTAGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA

mRNA sequence

CTTATAAAATAGAAACATAACTAGTTAACGAAGTTACATCTAGTGGTTACTATTTCGTGGTCCGATCTTATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA

Coding sequence (CDS)

ATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA

Protein sequence

MQTHCIGYPHSHITYTNALDHCVCIKYKVIHIHSVTMIRIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAAQHRWSNKPPISGVDINISIVRGVQLRVFSGMTLWLTNVD

Homology

[Close]

BLAST of MELO3C032723 vs. NCBI nr
Match: KAG8649245.1 (hypothetical protein MANES_08G076375v8 [Manihot esculenta])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KDAFLVYGGLE+ELVV+G+TDASFQ++KDD+RS SG+VF LNGG  SWKSSKQ
Sbjct: 165 RTKDAFLVYGGLEDELVVSGYTDASFQTDKDDFRSQSGFVFNLNGGVVSWKSSKQ 219

[Close]

BLAST of MELO3C032723 vs. NCBI nr
Match: CAD40526.2 (OSJNBa0023J03.14 [Oryza sativa Japonica Group] >CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] >CAH66059.1 OSIGBa0125J07.8 [Oryza sativa] >CAH66155.1 OSIGBa0113B06.1 [Oryza sativa])

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583

[Close]

BLAST of MELO3C032723 vs. NCBI nr
Match: WP_219728013.1 (Ty1/Copia family ribonuclease HI, partial [Pseudomonas asplenii])

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
          R K+ FL+YGG E ELVVNG+TDASFQ++ DD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 28 RTKEMFLIYGGQEGELVVNGYTDASFQTDVDDFRSQSGFVFCLNGGAVSWKSSKQ 82

[Close]

BLAST of MELO3C032723 vs. NCBI nr
Match: WP_219728474.1 (Ty1/Copia family ribonuclease HI, partial [Pseudomonas protegens])

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
           R K+ FL+YGG E ELVVNG+TD SFQ++ DD+RS SG+VFCLNGGA SWKSSKQ  AA
Sbjct: 64  RTKEMFLIYGGQEGELVVNGYTDGSFQTDVDDFRSQSGFVFCLNGGAVSWKSSKQDTAA 122

[Close]

BLAST of MELO3C032723 vs. NCBI nr
Match: ADB85429.1 (putative retrotransposon protein [Phyllostachys edulis])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 39   RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
            R KDAFL+YGG + ELVVNG+TDASFQ++KDDYRS SG+VF LNGGA SWKSSKQ   A
Sbjct: 1139 RTKDAFLIYGG-DEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVA 1196

[Close]

BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: A0A0A9CW99 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
           R KD FLVYGG+E ELVVNG+TDASFQ++KDD++S SGYVFCLNGGA SWKSSKQ   A
Sbjct: 76  RTKDMFLVYGGVE-ELVVNGYTDASFQTDKDDFKSQSGYVFCLNGGAVSWKSSKQETVA 133

[Close]

BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: Q7X7F2 (OSJNBa0023J03.14 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0023J03.14 PE=4 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583

[Close]

BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: Q01M60 (OSIGBa0113B06.1 protein OS=Oryza sativa OX=4530 GN=OSIGBa0113B06.1 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583

[Close]

BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: O23864 (Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 39   RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
            R KD FLVYGG E +LVV+G+TDASFQ++KDDYRS SG+VFCLNGGA SWKSSKQ
Sbjct: 1143 RTKDMFLVYGG-EEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQ 1196

[Close]

BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: D3IVT9 (Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 39   RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
            R KDAFL+YGG + ELVVNG+TDASFQ++KDDYRS SG+VF LNGGA SWKSSKQ   A
Sbjct: 1139 RTKDAFLIYGG-DEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVA 1196

The following BLAST results are available for this feature:

BLAST of MELO3C032723 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8649245.1	4.1e-15	78.18	hypothetical protein MANES_08G076375v8 [Manihot esculenta]	[more]
CAD40526.2	9.2e-15	80.00	OSJNBa0023J03.14 [Oryza sativa Japonica Group] >CAE02400.1 OSJNBa0024J22.4 [Oryz...	[more]
WP_219728013.1	9.2e-15	74.55	Ty1/Copia family ribonuclease HI, partial [Pseudomonas asplenii]	[more]
WP_219728474.1	9.2e-15	71.19	Ty1/Copia family ribonuclease HI, partial [Pseudomonas protegens]	[more]
ADB85429.1	1.6e-14	74.58	putative retrotransposon protein [Phyllostachys edulis]	[more]

BLAST of MELO3C032723 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9CW99	1.2e-15	76.27	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
Q7X7F2	4.5e-15	80.00	OSJNBa0023J03.14 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0023J...	[more]
Q01M60	4.5e-15	80.00	OSIGBa0113B06.1 protein OS=Oryza sativa OX=4530 GN=OSIGBa0113B06.1 PE=4 SV=1	[more]
O23864	7.6e-15	78.18	Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1	[more]
D3IVT9	7.6e-15	74.58	Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1	[more]

BLAST of MELO3C032723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032723.1	MELO3C032723.1	mRNA