Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTTTACCACCGAGGCAGAAACGGCCGACGGCTGGCCGTGCACGCGGAACTGAGAAGAAGGGCAGTCGGGGACGGCCGTCGCTGATGCTTCCCGCCGGTGATGTGCGGACACAGAAATGGACGGTCGACGAAGGCGTGCGGCGACGTCTGTGTTCGCCGGATGAAGAAGCCGAAGAGAAGAAGACGAAGGAGAAGGGAGGACTGGCGACGTCGGGCGAGGAAGGGAGAGGAAGAAGAAGA A mRNA sequence
ATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTTTACCACCGAGGCAGAAACGGCCGACGGCTGGCCGTGCACGCGGAACTGAGAAGAAGGGCAGTCGGGGACGGCCGTCGCTGATGCTTCCCGCCGGTGATGTGCGGACACAGAAATGGACGGTCGACGAAGGCGTGCGGCGACGTCTGTGTTCGCCGGATGAAGAAGCCGAAGAGAAGAAGACGAAGGAGAAGGGAGGACTGGCGACGTCGGGCGAGGAAGGGAGAGGAAGAAGAAGAA Coding sequence (CDS)
ATGGTTTGCCCGGTTTCTTTCGTCGACGATGGTAATACGACGGCTGACGCTTTACCACCGAGGCAGAAACGGCCGACGGCTGGCCGTGCACGCGGAACTGAGAAGAAGGGCAGTCGGGGACGGCCGTCGCTGATGCTTCCCGCCGGTGATGTGCGGACACAGAAATGGACGGTCGACGAAGGCGTGCGGCGACGTCTGTGTTCGCCGGATGAAGAAGCCGAAGAGAAGAAGACGAAGGAGAAGGGAGGACTGGCGACGTCGGGCGAGGAAGGGAGAGGAAGAAGAAGA Protein sequence
MVCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKKGSRGRPSLMLPAGDVRTQKWTVDEGVRRRLCSPDEEAEEKKTKEKGGLATSGEEGRGRRR
Homology
BLAST of MELO3C027957 vs. NCBI nr
Match:
KAA0067956.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0
Query: 1 MVCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKKGSRGRPSL 45 M CPV++VD NTTADA+PPRQKRP AGRARGT+KK RGR SL Sbjct: 90 MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133
BLAST of MELO3C027957 vs. NCBI nr
Match:
KAA0046516.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 53.9 bits (128), Expect = 8.8e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
Query: 2 VCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKK 37 VCPV++VD TTADA+ PRQ+RP AGRARGT+KK Sbjct: 5 VCPVTYVDARYTTADAVQPRQRRPMAGRARGTQKK 39
BLAST of MELO3C027957 vs. ExPASy TrEMBL
Match:
A0A5A7VN13 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001400 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0
Query: 1 MVCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKKGSRGRPSL 45 M CPV++VD NTTADA+PPRQKRP AGRARGT+KK RGR SL Sbjct: 90 MACPVTYVDASNTTADAVPPRQKRPMAGRARGTQKKNGRGRLSL 133
BLAST of MELO3C027957 vs. ExPASy TrEMBL
Match:
A0A5A7TX05 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00150 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
Query: 2 VCPVSFVDDGNTTADALPPRQKRPTAGRARGTEKK 37 VCPV++VD TTADA+ PRQ+RP AGRARGT+KK Sbjct: 5 VCPVTYVDARYTTADAVQPRQRRPMAGRARGTQKK 39
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0067956.1 1.2e-08 75.00 NBS-LRR type resistance protein [Cucumis melo var. makuwa] [more]
KAA0046516.1 8.8e-04 71.43 gag/pol protein [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7VN13 5.7e-09 75.00 NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TX05 4.3e-04 71.43 Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G0015... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
A T G G T T T G C C C G G T T T C T T T C G T C G A C G A T G G T A A T A C G A C G G C T G A C G C T T T A C C A C C G A G G C A G A A A C G G C C G A C G G C T G G C C G T G C A C G C G G A A C T G A G A A G A A G G G C A G T C G G G G A C G G C C G T C G C T G A T G C T T C C C G C C G G T G A T G T G C G G A C A C A G A A A T G G A C G G T C G A C G A A G G C G T G C G G C G A C G T C T G T G T T C G C C G G A T G A A G A A G C C G A A G A G A A G A A G A C G A A G G A G A A G G G A G G A C T G G C G A C G T C G G G C G A G G A A G G G A G A G G A A G A A G A A G A A 50 100 150 200 250 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..96
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 56..96
Relationships
The following mRNA feature(s) are a part of this gene: