MELO3C016060 (gene) Melon (DHL92) v4

Overview


Name	MELO3C016060
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein no-on-transient A-like
Location	chr01: 31996717 .. 31997360 (+)
RNA-Seq Expression	MELO3C016060
Synteny	MELO3C016060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCCTTATATTCTCATCTCTATCTAACAAAAACCCCTAAAAATGGCTGCCATCAAATCCCTACTTTTCATATCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCGATTGCCGCGGCGCTTCCAATTCTGTTACAGGAATGCTCCGCCGTAACGTCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCATATCAAAAGAGGTGGGGGGGGGCGGATTCGACCTGTAGCGGCTGGCACTGGATTAACTGGCAACCGTAAATCAGCGGCGAGTCGGAGCCAAGTCGCTTCTTTTGGCCTTGGATTTCTCCTCTTCTTCTCACGATTGTTCTTGTAAATTCTGATTGATTTATTGGTTTCTATAAAAAACTGAGATTTGTTTCGGATTTTATTAATTCATTCCGTTCTTTTTTGTTTGATGATAAAAGAATGATATGTTTGTGTCACTGTGTTATGTGTTTATGTCACATCTAGCCAAATGAGCTAAAGGCGACGAGATTGCATTTCCGACTATTGTACTCGATTGTATCGTATACTTATGTCAGGTTATATTGTTTAGTTGTTATTATATAAATGATACATTTAATTTTAAATTTGATTGTTTATTT

mRNA sequence

ACTTCCTTATATTCTCATCTCTATCTAACAAAAACCCCTAAAAATGGCTGCCATCAAATCCCTACTTTTCATATCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCGATTGCCGCGGCGCTTCCAATTCTGTTACAGGAATGCTCCGCCGTAACGTCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCATATCAAAAGAGGTGGGGGGGGGCGGATTCGACCTGTAGCGGCTGGCACTGGATTAACTGGCAACCGTAAATCAGCGGCGAGTCGGAGCCAAGTCGCTTCTTTTGGCCTTGGATTTCTCCTCTTCTTCTCACGATTGTTCTTGTAAATTCTGATTGATTTATTGGTTTCTATAAAAAACTGAGATTTGTTTCGGATTTTATTAATTCATTCCGTTCTTTTTTGTTTGATGATAAAAGAATGATATGTTTGTGTCACTGTGTTATGTGTTTATGTCACATCTAGCCAAATGAGCTAAAGGCGACGAGATTGCATTTCCGACTATTGTACTCGATTGTATCGTATACTTATGTCAGGTTATATTGTTTAGTTGTTATTATATAAATGATACATTTAATTTTAAATTTGATTGTTTATTT

Coding sequence (CDS)

ATGGCTGCCATCAAATCCCTACTTTTCATATCTCTTCTCGCCCTTCTCTTCTTCTCCGAATCCCTATCCACTTCTGCCGCCGATTGCCGCGGCGCTTCCAATTCTGTTACAGGAATGCTCCGCCGTAACGTCCTTCAGACGGCGACTCATGAAATTGCAGATTCGGAAGGGAAGATGAATGTTCATATCAAAAGAGGTGGGGGGGGGCGGATTCGACCTGTAGCGGCTGGCACTGGATTAACTGGCAACCGTAAATCAGCGGCGAGTCGGAGCCAAGTCGCTTCTTTTGGCCTTGGATTTCTCCTCTTCTTCTCACGATTGTTCTTGTAA

Protein sequence

MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMNVHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLLFFSRLFL

Homology

[Close]

BLAST of MELO3C016060 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 5.6e-47
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
           MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60

Query: 61  VHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLLFFSRLFL 110
           VHIKRGGGGRIRPVAAGTG TGNRKSAASRSQVASFGLGFLLFFSRLFL
Sbjct: 61  VHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of MELO3C016060 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_015765 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
           MAAIKSL+ ISLLALLFFSESLSTSAA+CRGASNSVT MLRRN+LQTATHEIADSEGKMN
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61  VHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLLFFSRLFL 110
           V IK+GG GR RP+ AGTG TG R SAA+RS+V SFGLGFLLFF  L L
Sbjct: 61  VRIKKGGLGRFRPIGAGTG-TGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of MELO3C016060 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-19
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADS----- 60
           MAA+KSL+ ++LLALL FSESL+ SA D  G SNS+TGMLRRNVLQTA H+IAD+     
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  -EGKMNVHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLLFFSRLFL 110
            E KMNVHIKR    R+RPVA     TG R SAA+RS++AS G+G +L    LFL
Sbjct: 61  PERKMNVHIKR----RMRPVA-----TGTRSSAANRSRIASIGVGSVLVVLGLFL 106

[Close]

BLAST of MELO3C016060 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 6.9e-13
Identity = 70/142 (49.30%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGA-SNSVTGMLRRNVLQTATHEIA------ 60
           MAAIK+ +FISLLALLFF E L       RGA SNSVTG+L R +LQTA H+ A      
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  DSEGKM-NVHIK----------------------RGGGGRIRP---VAAGTGLTGNRKSA 110
            SE KM NVH+K                       GGGGR R       G G TG+ KSA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of MELO3C016060 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 8.4e-11
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
           MAAIK+LL I+L+ALL F ESL TSAA  RGAS S+ G+LRRN++QT       +E K N
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVAEKKFN 60

Query: 61  VHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLL 103
           VHIKR    R+RPV  G   T    SAA+RS+ A  G+G +L
Sbjct: 61  VHIKR--RMRMRPVLIGRPKT----SAANRSREAFCGVGSML 96

[Close]

BLAST of MELO3C016060 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-47
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
           MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60

Query: 61  VHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLLFFSRLFL 110
           VHIKRGGGGRIRPVAAGTG TGNRKSAASRSQVASFGLGFLLFFSRLFL
Sbjct: 61  VHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFFSRLFL 109

[Close]

BLAST of MELO3C016060 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 89/109 (81.65%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
           MAAIKSL+ ISLLALLFFSESLSTSAA+CRGASNSVT MLRRN+LQTATHEIADSEGKMN
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61  VHIKRGGGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLLFFSRLFL 110
           V IK+GG GR RP+ AGTG TG R SAA+RS+V SFGLGFLLFF  L L
Sbjct: 61  VRIKKGGLGRFRPIGAGTG-TGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of MELO3C016060 vs. ExPASy TrEMBL
Match: A0A1S3BRF6 (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 70/142 (49.30%), Postives = 80/142 (56.34%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGA-SNSVTGMLRRNVLQTATHEIA------ 60
           MAAIK+ +FISLLALLFF E L       RGA SNSVTG+L R +LQTA H+ A      
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  DSEGKM-NVHIK----------------------RGGGGRIRP---VAAGTGLTGNRKSA 110
            SE KM NVH+K                       GGGGR R       G G TG+ KSA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]

BLAST of MELO3C016060 vs. ExPASy TrEMBL
Match: A0A5A7VN87 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00030 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 42/72 (58.33%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 1  MAAIKSLLFISLLALLFFSESLSTSAADCRGA-SNSVTGMLRRNVLQTATHEIA------ 60
          MAAIK+ +FISLLALLFF E L       RGA SNSVTG+L R +LQTA H+ A      
Sbjct: 1  MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61 DSEGKM-NVHIK 65
           SE KM NVH+K
Sbjct: 61 SSERKMNNVHMK 72

[Close]

BLAST of MELO3C016060 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 48/117 (41.03%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIADSEGKMN 60
           MAAI+ L+ I+LLALLFFSESL T        S+S+TG+  RN+L T  H I +   + +
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  VHIKRG-----GGGRIRPVAAGTGLTGNRKSAASRSQVASFGLGFLL---FFSRLFL 110
              K          RIRP+        + KSA +RS+VASF +G +L    F  LFL
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

The following BLAST results are available for this feature:

BLAST of MELO3C016060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068047.1	5.6e-47	99.08	protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no...	[more]
KGN44886.1	2.4e-34	81.65	hypothetical protein Csa_015765 [Cucumis sativus]	[more]
KAG6575859.1	1.7e-19	60.00	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008451666.1	6.9e-13	49.30	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]
KAG6593163.1	8.4e-11	53.92	hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C016060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C016060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLE5	2.7e-47	99.08	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KAQ7	1.2e-34	81.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]
A0A1S3BRF6	3.3e-13	49.30	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]
A0A5A7VN87	1.2e-05	58.33	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3D3Y6	2.8e-04	41.03	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of MELO3C016060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016060.1	MELO3C016060.1	mRNA