Sgr015340 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr015340
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Descriptionhomeobox protein knotted-1-like LET6
Locationtig00003412: 914364 .. 917277 (+)
RNA-Seq ExpressionSgr015340
SyntenySgr015340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGAGGATCCAGTGGAAGCCGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACTGTAGTAACAATAACAGTAATGGACTTTCGACGATGATGATGATGAATAATTCTGCTGCGCCATCGCAAATATTGGAGAACAACAACAACAACAACAAACTATTTCTCCCTCTATCTTGGTCTGCTACTACTAATTCTGAACGCATCGCCACCAACGCTCAAAGGGTATCTGCTTTCGTCCCTCAAGGTCATAACAACAATGATGTTCAAAACAACGACAGCACCGCCACCACCACCAGTTGCAGAGGTAAATCATGGCGCATCCGCTGTTCCCCCGCCTCTTGGCCGCCTATGTCAACTGTCAGAAGGTGAACCCTCGTCGTGGTTTTGTATAATGCTTCTGATTCTTTTTGTAATCATCATTTCATGTGGGGGTGGTGAATATGCTAGTTTTGCTGCGCTGCAGGTGGGTGCGCCACCTGAAGTGGTGGCGAGGCTAGAGCAGGCCTGCGCGGTAGCCGTTGGGAATTGTAGGTCGTCGGCACGTGGGGATGATCCTGCACTCGACCAGTTCATGGAGGCTTACTGTGAGATGTTGACCAAGTACGAGCAAGAGTTGACCAAACCTTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATCGAGTCTCAGCTCAAAGCCCTAGCAGTTTCTTCTACATCGTCTGATGGTGACACTCTCCTCTCCTCTCTCTCTCTCTCTTTCTCTATCCCCTAATTTTTCTGTCTGCTTTCTCTCTCTTTTCTATTTTAATATTTTGTTTCCCTAGAATTATCATTGAAAATATGTTATATGTATTATGGCTTTTTGCCTTCCCTTATATTATGGTTTTAGCTGGGTGTAGGCAGTGGTTTGCAGTTCTAATGTGCCCTTTTACTCTTCTCTTCTCTTTGCGTTTTTCGCTAGGGAGTTTTTCATGTTTTAATTACATATCAAATCAGTTCAGAACTGAGTACTGGTGATATCAAGAAGAAGAAAAAAAAGCTTTTTAGAGATATAGAGAGATCTTTGAATCGAAGATGAAGGCATATCGGTTTGAGTAGTCTAGAAGAGATCAAACCGAGCGATTATATATTCTTTTTGTTTTTCTTGCAACTTTCTTAGTGCTGTGCTTCAAAAGACATAATTTTGTGTTGGGGGCAGCTCAGGCTTGCTGCTGAAAGTTTGAAACCAAACATGCATCTTAGGATAAAAGCCTTGTTTGTGCGTTGAATACAACTGTAAAACCTTAGATTTTCTCCCTGTGCATGGCCATGTCAGGATCCAAGCTTTTCTGGTTGGTTTTGTTTCTCTCTATTTGAGAGGTAAAATGACAAAAAATGGCTAATTATGATATAGAAAAGTGTTTTTTTAACCATCCATCGTATCTATCTATTAGGAGAATCATGCCAGCACGAGCATAGTTCGAGTGGTTAGATACCTTTACCTCATGGTCAGAAGTTGAAATTTGCTTTTCTTTATTTGCTATGTAATATTCTTTTTAAAACAATTAGTGCGGTTATTTTGAATAATTTCTCTTAAATTGATGGGATAGATTTTCAGTTGGATATATATGCTTAAAGATGTTAATGAATAACTGCATAAATTTCCTTTTACATGGAGAAATGCATTTATTAAGATGGGTTATTGCTGAGGTGAAGGAACTTTTTATTTAAAAGTAGTTGGAATGTATTATGAGAAATTATTCAAATTGATAGATGCAATGTTATAGAGATTAAAACATATAATATTTTTTTTATCATACATCTAATGGTTTACCACTCCTAATAATTTCTTGTCTATTACATAGTAGTTTCATCATTTAATTTTAACTTTCCAACTGACAAAATGTCTTTGGTTTTGATTTAACTTTTAAAGTGAATACAGATTTTACTTCTGTTTTAAATGATTTTTCTTTTAATACAACTTGACTCCCTCATCAATGATGGGCCATTTTTAATTGGATTCTTTATATTATATTTACTGATACAAATAAATTTTATCAATATTTTTTATCAGATACAAGTAAATTACTTCAGAAAGTGAGCTACTTTACTAGTGCTTCCAACTTAAAACATTATTTGATGAGGCAGGGTTCAGAAAACCTAATAGGTCATGGATTTAGTGTACTGATAAGCTCATAAATATATCAACTAACTTGAACTTCATCCTCACTCGAAATGGCCAAATTTGGAAATTCCTTCGTTTTCAAGCCTCTTCTTCTGGGATATGTAAGCAAATACTTCTCTCTTTCTAGCTAGCTCTGGCAAAGGAAAAGAGGGTTGTAGAGAGAGAGATCAAAGTTGGGTTGTGTTGATTAAGCTGCAGCTGGTTGTGTTCTGAAATGGATGCCTATGTCAGGTTGCGAGCTGGTCGGGCAAAATGAGTGTTCGAAGGAGGTCGAGGTGGATGTGAATGAGAACTACATCGATCCTCAAGCTGAAGAGAAGGAACTGAAAGGCCAGCTTCTGCGCAAATACAGCGGATATCTCGGTAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGGAAGTTGCCGAAAGAAGCCCGGCAGCAGCTGCTCGATTGGTGGAGCCGACACTACAAATGGCCATACCCCTCGGTACCCATTGAAATTTGATGAAATATGGCTATGAGTGTGTTTGAATGTTTTATATGTTAATGTGGCAAAAATGATCATGTGCCAGGAGTCGCAGAAGGTGGCGCTGGCGGAGTCGACAGGGTTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGAAAGCGCCATTGGAAGCCGTCGGAGGATATGCAGTTTGTGGTGATGGACGCCGCTCATCCACACTACTATCTGGACAATGTTATCTGCAACCCCTTCTCTATGGACTGCTCTTCCACTCTTTTCTGA

mRNA sequence

ATGGAGCGAGGATCCAGTGGAAGCCGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACTGTAGTAACAATAACAGTAATGGACTTTCGACGATGATGATGATGAATAATTCTGCTGCGCCATCGCAAATATTGGAGAACAACAACAACAACAACAAACTATTTCTCCCTCTATCTTGGTCTGCTACTACTAATTCTGAACGCATCGCCACCAACGCTCAAAGGGTATCTGCTTTCGTCCCTCAAGGTCATAACAACAATGATGTTCAAAACAACGACAGCACCGCCACCACCACCAGTTGCAGAGGTAAATCATGGCGCATCCGCTGTTCCCCCGCCTCTTGGCCGCCTATGTCAACTGTCAGAAGTTTTGCTGCGCTGCAGGTGGGTGCGCCACCTGAAGTGGTGGCGAGGCTAGAGCAGGCCTGCGCGGTAGCCGTTGGGAATTGTAGGTCGTCGGCACGTGGGGATGATCCTGCACTCGACCAGTTCATGGAGGCTTACTGTGAGATGTTGACCAAGTACGAGCAAGAGTTGACCAAACCTTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATCGAGTCTCAGCTCAAAGCCCTAGCAGTTTCTTCTACATCGTCTGATGGTTGCGAGCTGGTCGGGCAAAATGAGTGTTCGAAGGAGGTCGAGGTGGATGTGAATGAGAACTACATCGATCCTCAAGCTGAAGAGAAGGAACTGAAAGGCCAGCTTCTGCGCAAATACAGCGGATATCTCGGTAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGGAAGTTGCCGAAAGAAGCCCGGCAGCAGCTGCTCGATTGGTGGAGCCGACACTACAAATGGCCATACCCCTCGGAGTCGCAGAAGGTGGCGCTGGCGGAGTCGACAGGGTTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGAAAGCGCCATTGGAAGCCGTCGGAGGATATGCAGTTTGTGGTGATGGACGCCGCTCATCCACACTACTATCTGGACAATGTTATCTGCAACCCCTTCTCTATGGACTGCTCTTCCACTCTTTTCTGA

Coding sequence (CDS)

ATGGAGCGAGGATCCAGTGGAAGCCGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACTGTAGTAACAATAACAGTAATGGACTTTCGACGATGATGATGATGAATAATTCTGCTGCGCCATCGCAAATATTGGAGAACAACAACAACAACAACAAACTATTTCTCCCTCTATCTTGGTCTGCTACTACTAATTCTGAACGCATCGCCACCAACGCTCAAAGGGTATCTGCTTTCGTCCCTCAAGGTCATAACAACAATGATGTTCAAAACAACGACAGCACCGCCACCACCACCAGTTGCAGAGGTAAATCATGGCGCATCCGCTGTTCCCCCGCCTCTTGGCCGCCTATGTCAACTGTCAGAAGTTTTGCTGCGCTGCAGGTGGGTGCGCCACCTGAAGTGGTGGCGAGGCTAGAGCAGGCCTGCGCGGTAGCCGTTGGGAATTGTAGGTCGTCGGCACGTGGGGATGATCCTGCACTCGACCAGTTCATGGAGGCTTACTGTGAGATGTTGACCAAGTACGAGCAAGAGTTGACCAAACCTTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATCGAGTCTCAGCTCAAAGCCCTAGCAGTTTCTTCTACATCGTCTGATGGTTGCGAGCTGGTCGGGCAAAATGAGTGTTCGAAGGAGGTCGAGGTGGATGTGAATGAGAACTACATCGATCCTCAAGCTGAAGAGAAGGAACTGAAAGGCCAGCTTCTGCGCAAATACAGCGGATATCTCGGTAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGGAAGTTGCCGAAAGAAGCCCGGCAGCAGCTGCTCGATTGGTGGAGCCGACACTACAAATGGCCATACCCCTCGGAGTCGCAGAAGGTGGCGCTGGCGGAGTCGACAGGGTTGGACCTGAAGCAGATCAACAACTGGTTCATCAACCAGAGAAAGCGCCATTGGAAGCCGTCGGAGGATATGCAGTTTGTGGTGATGGACGCCGCTCATCCACACTACTATCTGGACAATGTTATCTGCAACCCCTTCTCTATGGACTGCTCTTCCACTCTTTTCTGA

Protein sequence

MERGSSGSRGSSFMAGFGENNCSNNNSNGLSTMMMMNNSAAPSQILENNNNNNKLFLPLSWSATTNSERIATNAQRVSAFVPQGHNNNDVQNNDSTATTTSCRGKSWRIRCSPASWPPMSTVRSFAALQVGAPPEVVARLEQACAVAVGNCRSSARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKALAVSSTSSDGCELVGQNECSKEVEVDVNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136261.16.8e-14277.75homeobox protein SBH1-like [Momordica charantia][more]
XP_038887406.11.0e-13473.74homeobox protein knotted-1-like LET6 [Benincasa hispida] >XP_038887407.1 homeobo... [more]
XP_004144513.14.0e-12671.19homeobox protein knotted-1-like LET6 [Cucumis sativus] >KGN43492.1 hypothetical ... [more]
XP_008455471.13.4e-12569.59PREDICTED: homeobox protein knotted-1-like LET6 [Cucumis melo][more]
KAG7022846.12.5e-12079.72Homeobox protein SBH1 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
O222992.6e-9655.87Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=... [more]
P466081.4e-9453.08Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1[more]
Q388741.3e-9071.13Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 ... [more]
Q9M6D92.0e-8870.26Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=... [more]
O041341.7e-6650.81Homeobox protein knotted-1-like 1 OS=Malus domestica OX=3750 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1C3133.3e-14277.75homeobox protein SBH1-like OS=Momordica charantia OX=3673 GN=LOC111008000 PE=3 S... [more]
A0A0A0K5G51.9e-12671.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041370 PE=3 SV=1[more]
A0A1S3C0Z51.6e-12569.59homeobox protein knotted-1-like LET6 OS=Cucumis melo OX=3656 GN=LOC103495627 PE=... [more]
A0A6J1ERR43.0e-11980.71homeobox protein knotted-1-like LET6 OS=Cucurbita moschata OX=3662 GN=LOC1114371... [more]
A0A6J1JKT85.1e-11980.07homeobox protein knotted-1-like LET6 OS=Cucurbita maxima OX=3661 GN=LOC111486097... [more]
Match NameE-valueIdentityDescription
AT1G62360.19.0e-9271.13KNOX/ELK homeobox transcription factor [more]
AT4G08150.12.3e-6344.77KNOTTED-like from Arabidopsis thaliana [more]
AT1G23380.22.6e-5444.23KNOTTED1-like homeobox gene 6 [more]
AT1G23380.15.7e-5444.83KNOTTED1-like homeobox gene 6 [more]
AT1G70510.15.9e-5148.18KNOTTED-like from Arabidopsis thaliana 2 [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005541KNOX2SMARTSM01256KNOX2_2coord: 152..203
e-value: 1.2E-26
score: 104.5
IPR005541KNOX2PFAMPF03791KNOX2coord: 157..201
e-value: 4.5E-22
score: 77.3
IPR005539ELK domainSMARTSM01188ELK_2coord: 240..261
e-value: 1.2E-7
score: 41.4
IPR005539ELK domainPFAMPF03789ELKcoord: 240..261
e-value: 1.6E-10
score: 40.8
IPR005539ELK domainPROSITEPS51213ELKcoord: 240..260
score: 11.173647
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 262..327
e-value: 1.4E-11
score: 54.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 260..323
score: 11.920164
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 272..324
e-value: 9.5419E-12
score: 57.6385
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 280..319
e-value: 6.3E-17
score: 61.2
NoneNo IPR availableGENE3D1.10.10.60coord: 265..327
e-value: 1.0E-26
score: 94.3
NoneNo IPR availablePANTHERPTHR11850:SF274HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1coord: 23..349
NoneNo IPR availablePANTHERPTHR11850HOMEOBOX PROTEIN TRANSCRIPTION FACTORScoord: 23..349
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 298..321
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 262..337

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr015340.1Sgr015340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding