Spg039978 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039978
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiongeneral transcription factor 3C polypeptide 6-like
Locationscaffold10: 46485917 .. 46490027 (-)
RNA-Seq ExpressionSpg039978
SyntenySpg039978
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTCAACTATCCTAAACCACGGGCACAGACGTGGCTAACACAAGCACACACGAGCCGAGCCAACCAGTCATTTGCAATTTGCCCTTTTAGGATTGGGTTGGCCGGTCCGGTCTGAACCGGAAAAATAATCCAAAGCCGAATCAAGGCAACCGTTGTTAAAATTCCCTCTCCTTCTTCCCCGAGATGTTTCAGAGCTCCTGGACTTGAAAAAGGAAAAGGAAACCCTAAAATAAAATTTGAGCATCTGTCAATCAAAGAGATTTGGTTCACGACAGTAACTGGAAGGCTCTTTTGCGTCTGCAACTTTAGTCGAACAAACTTCAAAGGCCGCAAGGAAGCTGTGGACTGAGGAACAAATTCTTCAGGCAGTAAGGTATCGTATACAAACTTCCTTGTATTGTATTGATTGTCTATGTGTCCTTGCTTCGTTGGATTGAAAAAAAAAAAAAAACCAAACCAGATCTAAGTTATTGTCTTTTGATTATAAATTGTCCTCCCTCCCTTCCATCAGACAACTCAAATTAGGACTTAGTTTGATGAAGTTGCTTCGATTGACTGAACAAGCTCCAAATTATCTGTAGGATGCTGGTGAGCCATTTTTTGAGAATGGAAGTTGTCTCTTGAAATTCTCTCATAAACGGTACTTGAAATTGGAATGAGAAGAGTCCATACGCTTCTTTTTAATAAAAATAGAAGGATACATTCATTAATGACATACAGTAAATTCAAAATTGATAAGCCAACTTAGTGGTTCAACTTGAACCAACTCACTTTTCCTTTCCCAATATTTTGTCCCGATCCCGATACATTTAATGGATGTACTTAAAAGAATGAGGTAAAATTGACATATATTTAGAATTTGGAGGGTAAAATGGAGAGGTAAAGTTTCTCCCTATAGCCACTTTTATATAGTATATATATATATATAAGTATAAGTATAGATTTGTGGCTAAGTAGGATTGTTATTATGGTTGGTTAGACTGTTTTAGCTGGGTTTGGCCCTTTGATGGTTGAGTTTTGGAACTCTTTTACCTGGTTGATTTTATGGTTATGTTTGGTTTGAAATGTTGTTGGAGTTATGTTGAGAAGAAGTTGTTGAATTTTGTATGATTTATTAGTTAGTTAACAAACAGTTTTCTAATTTAATTTCGAGGTGATATTAGTTTTACATGTTCATGTTTAGGATTCAATTTGATGAAATTAGAACTCTAAGGTTCAAAGTGATTAGTATAGGGATCAAAATATGAAAAAGAACATTTGGAATTCATAACATAAATGACTATGATAGAACTAAACGGGCCAAGCTGGACAAAAGATGGTGTCTACCTCTTCTTTTAAATTTTGGGCAAGGTGTAAAACCCCCCAAAAAAGAAAATCTATATTATTTTCTAGTGGAAAAGGTCTCATCATTTAGCCAAAGCTTCATTTTTTACATTACTAGCATCACTGAGCCGCTGACAAATTCAATTTATTTTTTCAGAGGTATTTGTAGGAAACATGAAGAGAACTACAATTGATTCTGTCTCTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGCGATATATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGTATGTTCCTTAGCTAATCTAATTTCAAGTAATAAAGTTTTATCAACGAGCTAAGTCTTGATGTTTAATTGCTTGCTTTCAAGATGCATGGTTAAATTAGAAATGCAATGTCCATATAGGATATTTACTATATATTTGCATGTAGCTTTAGGAAATTTACTCTTCCTTTAATGCACTACGGGGCAACCTCTCGAACTTGAAAGTCCTTGCTACATTGCTTCCTGTTTGCTACTGCATATTATACATTAGCCTTAGTAAAATGGTCGGTCATACCAAACTTGGTGGAGAGTTGAGCCAAAAAAGGGGGCATCTTTTTGATTTTGAAAATAATGAATACAAGATGGACAGAAGCCCCACCTTCATAAATTGGTTAGATTTAAGGGAAAGTAGATCAAATTACATTAGTTATCATCAAGTAAAAATGAAATAACCTCAGGTAAAAACTATTCCGTACAACTACTCAAAGTAAGGTTTGTTTCTTTCCTAAAAAAAGACTACCCAAATTAAGGTTTTGATTTAACCCCTATGCCTATATCAAGAGCAGTGTTAAGTTTATATCCATGACTGCTGATCAACTGACAGGTATTAATCACCAACCAAGCCAATTTTTTTATTACAAAATTTTTCCAACTGTTAATACTCCTCTACTAAACTTCAGTGCTAGACCTAGACACAACATGTATTTTCCTGGGGTATGTTGTGCCGGTTTGATTAGGTTTTTGATAATTACGTGCACTGAGTTTTAAGAATTAAATTGTTATGTATGTAGAGTTGGCAAGCATTTTGTTAATCTGTATGGTTTTTTAAAGTTTTGATTAATTTGTTTTGCAGGGTTTGGACACCATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTAAGTCTTTAATAAGATACGAGCTCTGCATCTAGATTTCTGCAGCAGAACCTGAATGTTTAAGCTCTTTGGCATTACTGAGTTTACACATGAGCATCTTTCTGCACAATTTTCCACTTTGCAGTTGATTTTTTTCTCAAGTTATATCTTCTGCCTGCCTCTCTGTTTGGAAGGAACACGGGGCTTCACTTGCTATGCTTGAGTTATTTATGATTTATCTAGGTGAAGTTGAATCTGATATAAGGATAAGCTTTCAGATGTATTGTAATTTGATGTGCTAATGCTCACAATTTAAATGAAATTAATCTTACTCTTTTATTAATCTTCCTTTGGGGATGTTAGAGTTCTTTGTTTGGGGTTCTTCTTTGGGGGTGCATCACAGGGATGAGAGATCTTTGTGATCTTTGATGGAGAAGGTGCTCTTGCATACTCCCTTTAGGGAGAAAGGCAAAGTGTTGTTTGTTGTGATAGCTTGGCTTCTTTGTTGTTTTGTGGGGTATTTGGCTAGAGAAGAACTCTAGGATCTTTAGAGGGAGAAAGGCCGAGTGAAGAGGTTTGGGAAAGTATTAGCGCGGCCATTTTGTAATTATGATCTTGGTCTTGTTCTTTTGGATTGGAGTCCTTTTTATAGCCAGTTTTGGACTCCTGTTGTTCTTGGGTTTGTCTTTTGTATGTCCTTGTGTTTTTTCATTTATTCAATGAAAGCTCGATTTCTTACCCAAAAAAAAAATCCTACCCTTTCACTTTTTGTTGGGGATCAAGGCTGTCACTGTCTATATTTAATGAATAACAGGAAAACATATATAACTTTCGTATCAAAATCATTTTTCTTTATAAGATATTTCATAGAAAAATATTAATGCGTTAGATCTTTCCTATTTTGTGATCATACTGTATATTTAGTGGATTACTTATCTCTCTCTTTTTTAGGTTGGAGAGTACGAAGAAACAATAGGCACATGTCTTACCTTCGCAGAAGGTAAGTAACCTCACTTTATTATATTATCTTGGCATGTAAATATAAAATATATTATTTGGACTCATTGATTATTTCAAAACAATCTTCCAGCTTCATTCCCATAAATCTAAAGGAGATTTAACAATTTGACTCCTTAAATTTTATGCAAGTTTTCGATTTGTTCTTTAAACCGTAGAAAGAAAGTCCATCTGATCTCTGTACTTTAAATAATGTTGAATATGTTATATTTACTACTTTGCATATACGGTATGAACATTTCGATAGAGATCGGAAAACTATTCTCTTACACTGAAGTCATGTTCCCTACTGCAGAAGAAGTCTCTGTGGTTGAAGAAGAAGTTGGGCCATCTGAAACAAATCGTCTCACAGCAGAAGCAGTTGAACCAGAACAAACTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTACATAAGATCCTTAAATTTAAATTGTTGCCTGATTCTGCTGTTCCAAACTCAACATCTTAGCACACTAAACAGACTAATGTCTTTTTTGTATATATTACTTTTGTATGGTCCTAAATAAACTTGTTCATTGACTTATAACTTCTAACTTATCTAAGTTAAATATTACTTCTTTTTTTTTTTTTAAGTACAACGACGTTTGGGGGTGGAGG

mRNA sequence

ATGAAGAGAACTACAATTGATTCTGTCTCTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGCGATATATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAGTACGAAGAAACAATAGGCACATGTCTTACCTTCGCAGAAGAAGAAGTCTCTGTGGTTGAAGAAGAAGTTGGGCCATCTGAAACAAATCGTCTCACAGCAGAAGCAGTTGAACCAGAACAAACTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTACATAAGATCCTTAAATTTAAATTGTTGCCTGATTCTGCTGTTCCAAACTCAACATCTTAG

Coding sequence (CDS)

ATGAAGAGAACTACAATTGATTCTGTCTCTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGCGATATATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATATGTGACAAAATTAAGATGGTTGGAGAGTACGAAGAAACAATAGGCACATGTCTTACCTTCGCAGAAGAAGAAGTCTCTGTGGTTGAAGAAGAAGTTGGGCCATCTGAAACAAATCGTCTCACAGCAGAAGCAGTTGAACCAGAACAAACTCCAAGGAAGGAGTTGAAACCCATTGCTTCTGTACATAAGATCCTTAAATTTAAATTGTTGCCTGATTCTGCTGTTCCAAACTCAACATCTTAG

Protein sequence

MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLPDSAVPNSTS
Homology
BLAST of Spg039978 vs. NCBI nr
Match: XP_022133708.1 (uncharacterized protein LOC111006225 [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 7.3e-54
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++TTID  SDGEE+YVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 61  ETIGTCLTFAEEEVSVV--EEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVSVV  EEE GPSET   TAEAV P + PRKELKPIASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 121 LPDSAVPNSTS 130
           LPDSAVPNSTS
Sbjct: 121 LPDSAVPNSTS 131

BLAST of Spg039978 vs. NCBI nr
Match: XP_023550663.1 (uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550664.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550665.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550666.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 5.8e-51
Identity = 108/134 (80.60%), Postives = 119/134 (88.81%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++  IDS SDGEEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEVS+VEEE  PSETNR + +AVEP Q PRK+LKP+ASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRKDLKPVASVHKILKFKLLD 120

Query: 121 -----DSAVPNSTS 130
                DSAVP+STS
Sbjct: 121 SVDSVDSAVPDSTS 134

BLAST of Spg039978 vs. NCBI nr
Match: XP_022993830.1 (uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993832.1 uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993833.1 uncharacterized protein LOC111489725 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 106/131 (80.92%), Postives = 119/131 (90.84%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEVS+VEEE  PS+TNR + +AVEP Q PRK+LKP+ASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVSMVEEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKLLD 120

Query: 121 --DSAVPNSTS 130
             DSAVP+STS
Sbjct: 121 SVDSAVPDSTS 131

BLAST of Spg039978 vs. NCBI nr
Match: XP_022939121.1 (uncharacterized protein LOC111445121, partial [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.2e-50
Identity = 106/134 (79.10%), Postives = 119/134 (88.81%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 143 MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 202

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEVS+VEEE  PSETNR + +AVEP Q PR++LKP+ASVHKILKFKLL 
Sbjct: 203 ETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKLLD 262

Query: 121 -----DSAVPNSTS 130
                DSAVP+STS
Sbjct: 263 SVDSVDSAVPDSTS 276

BLAST of Spg039978 vs. NCBI nr
Match: XP_038885696.1 (uncharacterized protein LOC120075999 [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-50
Identity = 107/129 (82.95%), Postives = 116/129 (89.92%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++ TIDS  D EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKATIDSACDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEV VVEEE  PSE+NR + EA EP+Q PRKELKP+ASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAEPSESNRRSREAAEPKQAPRKELKPVASVHKILKFKLL- 120

Query: 121 DSAVPNSTS 130
           DSAVPNS S
Sbjct: 121 DSAVPNSIS 128

BLAST of Spg039978 vs. ExPASy TrEMBL
Match: A0A6J1BZW5 (uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006225 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.5e-54
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++TTID  SDGEE+YVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE
Sbjct: 1   MEKTTIDPASDGEEDYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60

Query: 61  ETIGTCLTFAEEEVSVV--EEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKL 120
           ETIGTCLTFAEEEVSVV  EEE GPSET   TAEAV P + PRKELKPIASVHKILKFKL
Sbjct: 61  ETIGTCLTFAEEEVSVVEEEEEAGPSETIHRTAEAVAPNRAPRKELKPIASVHKILKFKL 120

Query: 121 LPDSAVPNSTS 130
           LPDSAVPNSTS
Sbjct: 121 LPDSAVPNSTS 131

BLAST of Spg039978 vs. ExPASy TrEMBL
Match: A0A6J1JTZ1 (uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.2e-51
Identity = 106/131 (80.92%), Postives = 119/131 (90.84%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 1   MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEVS+VEEE  PS+TNR + +AVEP Q PRK+LKP+ASVHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVSMVEEEAVPSKTNRRSEKAVEPHQAPRKDLKPVASVHKILKFKLLD 120

Query: 121 --DSAVPNSTS 130
             DSAVP+STS
Sbjct: 121 SVDSAVPDSTS 131

BLAST of Spg039978 vs. ExPASy TrEMBL
Match: A0A6J1FF13 (uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC111445121 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 106/134 (79.10%), Postives = 119/134 (88.81%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++  IDS SDGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYE
Sbjct: 143 MEKAAIDSASDGEEEYVLIDLGDVSLLDIPPNAPYVLSGLDTMNPILTICDKIKMIGEYE 202

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEVS+VEEE  PSETNR + +AVEP Q PR++LKP+ASVHKILKFKLL 
Sbjct: 203 ETIGTCLTFAEEEVSMVEEEAVPSETNRRSEKAVEPNQAPRRDLKPVASVHKILKFKLLD 262

Query: 121 -----DSAVPNSTS 130
                DSAVP+STS
Sbjct: 263 SVDSVDSAVPDSTS 276

BLAST of Spg039978 vs. ExPASy TrEMBL
Match: A0A0A0LML8 (TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.1e-46
Identity = 103/129 (79.84%), Postives = 111/129 (86.05%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++ TIDS SD EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEV VVEEE  PSET R + E VEPEQ  +KELK +A VHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLL- 120

Query: 121 DSAVPNSTS 130
           DS VP+S S
Sbjct: 121 DSDVPSSIS 128

BLAST of Spg039978 vs. ExPASy TrEMBL
Match: A0A1S4DTV8 (general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LOC103485483 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0

Query: 1   MKRTTIDSVSDGEEEYVLLDLGDISLLDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYE 60
           M++ TIDS S+ EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNPVLTICDK KM+GEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVSVVEEEVGPSETNRLTAEAVEPEQTPRKELKPIASVHKILKFKLLP 120
           ETIGTCLTFAEEEV VVEEE  PSETN  + EA EP+Q  RKELK  A VHKILKFKLL 
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLL- 120

Query: 121 DSAVPNSTS 130
           DS VP+  S
Sbjct: 121 DSDVPSPIS 128

BLAST of Spg039978 vs. TAIR 10
Match: AT3G15420.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-20
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 13  EEEYVLLDLGDISL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAE 72
           EEE+V++DL ++S  ++IP +APY LSGLDT+NPVLTI  KIK+VGEY ETIGTCL F+E
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSE 61

Query: 73  EEVSVVEEEVGPSETNRLTAEAVEPEQTPRKE-LKPIASVHKILKFKL 119
                 +EEV  SE            Q P K+ ++P+A +HKILKF+L
Sbjct: 62  ------KEEVSASE-----------NQMPHKKIIEPVAKLHKILKFRL 92

BLAST of Spg039978 vs. TAIR 10
Match: AT1G80745.1 (Transcription factor TFIIIC, tau55-related protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-19
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 13  EEEYVLLDLGDISL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMVGEYEETIGTCLTFAE 72
           E+E+V++DL D+S  +DIP +APY LSGLDT+NPVLTI  K+K+VGEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 73  EEVSVVEEEVGPSETNRLTAEAVEPEQTPRKE-LKPIASVHKILKFKLLP 121
           +                         QTP+K+ ++P+A +HKILKF+L P
Sbjct: 62  K----------------------GDNQTPQKKTVEPVAKLHKILKFRLAP 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022133708.17.3e-5487.79uncharacterized protein LOC111006225 [Momordica charantia][more]
XP_023550663.15.8e-5180.60uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022993830.11.3e-5080.92uncharacterized protein LOC111489725 [Cucurbita maxima] >XP_022993831.1 uncharac... [more]
XP_022939121.12.2e-5079.10uncharacterized protein LOC111445121, partial [Cucurbita moschata][more]
XP_038885696.12.9e-5082.95uncharacterized protein LOC120075999 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BZW53.5e-5487.79uncharacterized protein LOC111006225 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A6J1JTZ16.2e-5180.92uncharacterized protein LOC111489725 OS=Cucurbita maxima OX=3661 GN=LOC111489725... [more]
A0A6J1FF131.1e-5079.10uncharacterized protein LOC111445121 OS=Cucurbita moschata OX=3662 GN=LOC1114451... [more]
A0A0A0LML82.1e-4679.84TFIIIC_sub6 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406680... [more]
A0A1S4DTV81.3e-4578.29general transcription factor 3C polypeptide 6-like OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT3G15420.11.1e-2052.78Transcription factor TFIIIC, tau55-related protein [more]
AT1G80745.13.6e-1947.27Transcription factor TFIIIC, tau55-related protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019481Transcription factor TFIIIC, triple barrel domainPFAMPF10419TFIIIC_sub6coord: 13..117
e-value: 5.8E-13
score: 48.5
NoneNo IPR availableGENE3D2.60.40.4370coord: 3..117
e-value: 1.9E-11
score: 45.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..101
IPR042771TFIIIC subunit GTF3C6-likePANTHERPTHR21860TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATEDcoord: 7..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039978.1Spg039978.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006383 transcription by RNA polymerase III
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000127 transcription factor TFIIIC complex