Spg038136 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038136
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glutathione peroxidase
Location	scaffold12: 43337692 .. 43338209 (-)
RNA-Seq Expression	Spg038136
Synteny	Spg038136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGGGGAAGAAGAAGAACAGAATAGGTTACACATAAACAGAGGAAAAGAGAGAAGAAAATGGGTGGTTCTCAGTCGGTCTCTGAGAAGTCCATTCATGAATTCGTAGTCAAGGTAGATTATGATACTCTTTCCTGCTGCACCTTTTTGTTTTCGGAGATACTTCAAAACGGAAACTGATGAAATTAAGTTATTTGTGAGTTGAAGGATGCCAGAGGACAGGACGTGGACCTAAGCATTTACCGGGGAAAGGTCCTTCTTGTGGTAAATGTTGCTTCCAAATGGTTCGTCTTCTTTTCCTCTCTACTTTGCTCCTCTTGCTTACTCGAATTCATGGGATTCTTATTCCTGGAGAATTTTGAATTGCCTGGGCAGTGGTTACACAGATTCAAATTATACCCAGCTCACGGAACTTTACAGCAAATACAAGGAAAAAGGTCTGTACTTTTCTTTCCCCTGCTAGTGATTCATTTGTTACAGGTTTCGGTACACCACTTCTTCTGTGCAATGATGGATTGA

mRNA sequence

ATGGGTGGTTCTCAGTCGGTCTCTGAGAAGTCCATTCATGAATTCGTAGTCAAGGATGCCAGAGGACAGGACGTGGACCTAAGCATTTACCGGGGAAAGGTCCTTCTTGTGGTAAATGTTGCTTCCAAATGGTTCGTCTTCTTTTCCTCTCTACTTTGCTCCTCTTGCTTACTCGAATTCATGGGATTCTTATTCCTGGAGAATTTTGAATTGCCTGGGCAGTGGTTACACAGATTCAAATTATACCCAGCTCACGGAACTTTACAGCAAATACAAGGAAAAAGGTCTGTACTTTTCTTTCCCCTGCTAGTGATTCATTTGTTACAGGTTTCGGTACACCACTTCTTCTGTGCAATGATGGATTGA

Coding sequence (CDS)

ATGGGTGGTTCTCAGTCGGTCTCTGAGAAGTCCATTCATGAATTCGTAGTCAAGGATGCCAGAGGACAGGACGTGGACCTAAGCATTTACCGGGGAAAGGTCCTTCTTGTGGTAAATGTTGCTTCCAAATGGTTCGTCTTCTTTTCCTCTCTACTTTGCTCCTCTTGCTTACTCGAATTCATGGGATTCTTATTCCTGGAGAATTTTGAATTGCCTGGGCAGTGGTTACACAGATTCAAATTATACCCAGCTCACGGAACTTTACAGCAAATACAAGGAAAAAGGTCTGTACTTTTCTTTCCCCTGCTAGTGATTCATTTGTTACAGGTTTCGGTACACCACTTCTTCTGTGCAATGATGGATTGA

Protein sequence

MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASKWFVFFSSLLCSSCLLEFMGFLFLENFELPGQWLHRFKLYPAHGTLQQIQGKRSVLFFPLLVIHLLQVSVHHFFCAMMD

Homology

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BLAST of Spg038136 vs. NCBI nr
Match: XP_008449386.1 (PREDICTED: probable glutathione peroxidase 5 [Cucumis melo] >KAA0057378.1 putative glutathione peroxidase 5 [Cucumis melo var. makuwa] >TYK30067.1 putative glutathione peroxidase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-12
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 43

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BLAST of Spg038136 vs. NCBI nr
Match: XP_038888023.1 (probable glutathione peroxidase 5 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-12
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. NCBI nr
Match: XP_022155674.1 (probable glutathione peroxidase 5 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-12
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. NCBI nr
Match: XP_004140088.1 (probable glutathione peroxidase 5 [Cucumis sativus] >KGN47873.1 hypothetical protein Csa_003111 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 6.5e-12
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQD+DLSIYRGKVLLVVNVASK
Sbjct: 1  MGSSQSVSEKSIHEFVVKDARGQDLDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. NCBI nr
Match: XP_023533991.1 (probable glutathione peroxidase 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDA+G+DVDLSIYRGKV+LVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDAKGEDVDLSIYRGKVVLVVNVASK 43

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BLAST of Spg038136 vs. ExPASy Swiss-Prot
Match: Q9LYB4 (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana OX=3702 GN=GPX5 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 4  SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          S SVSEKSIH+F VKD+ G++VDLS+Y+GKVLLVVNVASK
Sbjct: 6  SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASK 45

[Close]

BLAST of Spg038136 vs. ExPASy Swiss-Prot
Match: O23814 (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-10
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          M    S   KS+HEFVV+DARG DVDLSIY+GKVLL+VNVAS+
Sbjct: 1  MASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQ 43

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BLAST of Spg038136 vs. ExPASy Swiss-Prot
Match: Q8L910 (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana OX=3702 GN=GPX4 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-09
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG S SV E+S+H+F VKD+ G+D+++SIY+GKVLL+VNVASK
Sbjct: 1  MGASASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASK 43

[Close]

BLAST of Spg038136 vs. ExPASy Swiss-Prot
Match: Q9LEF0 (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum OX=3544 GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 4  SQSVSE-KSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          SQS  + KSIH+F+VKDARG DVDLSIY+GKVLL+VNVAS+
Sbjct: 3  SQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQ 43

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BLAST of Spg038136 vs. ExPASy Swiss-Prot
Match: Q06652 (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis OX=2711 GN=CSA PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 27/38 (71.05%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 6  SVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          S S+ S+H+F VKDA+GQDVDLSIY+GK+LL+VNVAS+
Sbjct: 3  SQSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQ 40

[Close]

BLAST of Spg038136 vs. ExPASy TrEMBL
Match: A0A5A7UQH6 (Glutathione peroxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00400 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. ExPASy TrEMBL
Match: A0A6J1DQY9 (Glutathione peroxidase OS=Momordica charantia OX=3673 GN=LOC111022751 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. ExPASy TrEMBL
Match: A0A1S3BLX5 (Glutathione peroxidase OS=Cucumis melo OX=3656 GN=LOC103491282 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. ExPASy TrEMBL
Match: A0A0A0KE99 (Glutathione peroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G408810 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDARGQD+DLSIYRGKVLLVVNVASK
Sbjct: 1  MGSSQSVSEKSIHEFVVKDARGQDLDLSIYRGKVLLVVNVASK 43

[Close]

BLAST of Spg038136 vs. ExPASy TrEMBL
Match: A0A6J1ESJ2 (Glutathione peroxidase OS=Cucurbita moschata OX=3662 GN=LOC111437382 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG SQSVSEKSIHEFVVKDA+G+DVDLSIYRGKV+LVVNVASK
Sbjct: 1  MGASQSVSEKSIHEFVVKDAKGEDVDLSIYRGKVVLVVNVASK 43

[Close]

BLAST of Spg038136 vs. TAIR 10
Match: AT3G63080.1 (glutathione peroxidase 5 )

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-11
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 4  SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          S SVSEKSIH+F VKD+ G++VDLS+Y+GKVLLVVNVASK
Sbjct: 6  SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASK 45

[Close]

BLAST of Spg038136 vs. TAIR 10
Match: AT2G48150.1 (glutathione peroxidase 4 )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1  MGGSQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          MG S SV E+S+H+F VKD+ G+D+++SIY+GKVLL+VNVASK
Sbjct: 1  MGASASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASK 43

[Close]

BLAST of Spg038136 vs. TAIR 10
Match: AT4G11600.1 (glutathione peroxidase 6 )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 6   SVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
           S   KS+++F VKDA+G DVDLSIY+GKVLL+VNVAS+
Sbjct: 67  SSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQ 104

[Close]

BLAST of Spg038136 vs. TAIR 10
Match: AT2G25080.1 (glutathione peroxidase 1 )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 20/40 (50.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 4   SQSVSEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
           +++ +EK++H+F VKD  G+DV L+ ++GKV+L+VNVAS+
Sbjct: 71  ARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASR 110

[Close]

BLAST of Spg038136 vs. TAIR 10
Match: AT2G31570.1 (glutathione peroxidase 2 )

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 8  SEKSIHEFVVKDARGQDVDLSIYRGKVLLVVNVASK 44
          S KSI++F VKD  G DV L  Y+GK LLVVNVASK
Sbjct: 5  SPKSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASK 40

The following BLAST results are available for this feature:

BLAST of Spg038136 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449386.1	2.9e-12	97.67	PREDICTED: probable glutathione peroxidase 5 [Cucumis melo] >KAA0057378.1 putati...	[more]
XP_038888023.1	2.9e-12	97.67	probable glutathione peroxidase 5 [Benincasa hispida]	[more]
XP_022155674.1	2.9e-12	97.67	probable glutathione peroxidase 5 [Momordica charantia]	[more]
XP_004140088.1	6.5e-12	95.35	probable glutathione peroxidase 5 [Cucumis sativus] >KGN47873.1 hypothetical pro...	[more]
XP_023533991.1	3.2e-11	90.70	probable glutathione peroxidase 5 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg038136 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYB4	6.3e-10	77.50	Probable glutathione peroxidase 5 OS=Arabidopsis thaliana OX=3702 GN=GPX5 PE=1 S...	[more]
O23814	8.2e-10	69.77	Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea ...	[more]
Q8L910	2.4e-09	65.12	Probable glutathione peroxidase 4 OS=Arabidopsis thaliana OX=3702 GN=GPX4 PE=2 S...	[more]
Q9LEF0	3.1e-09	75.61	Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum c...	[more]
Q06652	1.6e-08	71.05	Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis OX...	[more]

BLAST of Spg038136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQH6	1.4e-12	97.67	Glutathione peroxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A6J1DQY9	1.4e-12	97.67	Glutathione peroxidase OS=Momordica charantia OX=3673 GN=LOC111022751 PE=3 SV=1	[more]
A0A1S3BLX5	1.4e-12	97.67	Glutathione peroxidase OS=Cucumis melo OX=3656 GN=LOC103491282 PE=3 SV=1	[more]
A0A0A0KE99	3.1e-12	95.35	Glutathione peroxidase OS=Cucumis sativus OX=3659 GN=Csa_6G408810 PE=3 SV=1	[more]
A0A6J1ESJ2	1.6e-11	90.70	Glutathione peroxidase OS=Cucurbita moschata OX=3662 GN=LOC111437382 PE=3 SV=1	[more]

BLAST of Spg038136 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63080.1	4.5e-11	77.50	glutathione peroxidase 5	[more]
AT2G48150.1	1.7e-10	65.12	glutathione peroxidase 4	[more]
AT4G11600.1	1.2e-08	68.42	glutathione peroxidase 6	[more]
AT2G25080.1	2.5e-06	50.00	glutathione peroxidase 1	[more]
AT2G31570.1	3.3e-06	66.67	glutathione peroxidase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000889	Glutathione peroxidase	PFAM	PF00255	GSHPx	coord: 12..43 e-value: 1.4E-5 score: 24.7
IPR000889	Glutathione peroxidase	PANTHER	PTHR11592	GLUTATHIONE PEROXIDASE	coord: 1..44
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 3..62 e-value: 3.7E-10 score: 41.3
None	No IPR available	PANTHER	PTHR11592:SF94	GLUTATHIONE PEROXIDASE	coord: 1..44
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 10..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038136.1	Spg038136.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004602	glutathione peroxidase activity