Spg030381 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030381
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Locationscaffold6: 25549520 .. 25550281 (+)
RNA-Seq ExpressionSpg030381
SyntenySpg030381
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAAAAGATCTTACCCCCCAATATCTATGTCGATACCTCGAAAATAGCGATATTTCGATTAATATCGGTGATTTTTTCATCCTTGGCTGCGATAGCTCGACCTGGCGCCAATTGGGATGGGCGTGGAACTGCCAAGACCCTAAAGGCGCAGTGGCTAGACTTCGAGGCCACCACATGGATGCATTGGATCAAAAATCACATCATGCCCACAACGCATGATGCCACTTTGTCAATCCCGCGGGTGGTCCTCGTATATCGTATCACCAATGGGATCCCAATTGACCTGGGCCCCATTCTCTCCAATTCCCTGCGCCAGACTACCTACAAGCCTAAGGGAATAATGTTCTGCCCAAGCCTTGTCACCAAACTCTGTCGCATGGCTGGCATTGTCCCCGCGCCACCTGATGAAATACGAGCCATGCGGTAAACATTTGATGAGCAATGGCTTGCGCGCATCACTAGAACGCATAACAATCAAATCCACGTTGTGCCCACGCCCAGTCAAGAGCCAACCCCTGCGGCAGAAAATCAGCCCCCAACTCCTGAACCCCAGCAAAAGAAGAGGCGCAAGCAAACCGCCCGCCGGAATCCTTCAGTGGCGGCAAGGCAAGTGCAAGAAGTGCTTCCAACGCAGGAAACTATTGTCTGCGCTCTCAACCAACAAACCTTGCCGCCACTCCCAGAATCGCCCGTGCGTCGGCCAACTTTTCCAGAAGTGTGCATGGAGACCGTGCATCAATTTCAAGGCCGCGAATAG

mRNA sequence

ATGGTAAAAAAGATCTTACCCCCCAATATCTATGTCGATACCTCGAAAATAGCGATATTTCGATTAATATCGGTGATTTTTTCATCCTTGGCTGCGATAGCTCGACCTGGCGCCAATTGGGATGGGCGTGGAACTGCCAAGACCCTAAAGGCGCAGTGGCTAGACTTCGAGGCCACCACATGGATGCATTGGATCAAAAATCACATCATGCCCACAACGCATGATGCCACTTTGTCAATCCCGCGGGTGGTCCTCGTATATCGTATCACCAATGGGATCCCAATTGACCTGGGCCCCATTCTCTCCAATTCCCTGCGCCAGACTACCTACAAGCCTAAGGGAATAATGTTCTGCCCAAGCCTTGTCACCAAACTCTGTCGCATGGCTGGCATTGTCCCCGCGCCACCTGATGAAATACGAGCCATGCGTCAAGAGCCAACCCCTGCGGCAGAAAATCAGCCCCCAACTCCTGAACCCCAGCAAAAGAAGAGGCGCAAGCAAACCGCCCGCCGGAATCCTTCAGTGGCGGCAAGGCAAGTGCAAGAAGTGCTTCCAACGCAGGAAACTATTGTCTGCGCTCTCAACCAACAAACCTTGCCGCCACTCCCAGAATCGCCCGTGCGTCGGCCAACTTTTCCAGAAGTGTGCATGGAGACCGTGCATCAATTTCAAGGCCGCGAATAG

Coding sequence (CDS)

ATGGTAAAAAAGATCTTACCCCCCAATATCTATGTCGATACCTCGAAAATAGCGATATTTCGATTAATATCGGTGATTTTTTCATCCTTGGCTGCGATAGCTCGACCTGGCGCCAATTGGGATGGGCGTGGAACTGCCAAGACCCTAAAGGCGCAGTGGCTAGACTTCGAGGCCACCACATGGATGCATTGGATCAAAAATCACATCATGCCCACAACGCATGATGCCACTTTGTCAATCCCGCGGGTGGTCCTCGTATATCGTATCACCAATGGGATCCCAATTGACCTGGGCCCCATTCTCTCCAATTCCCTGCGCCAGACTACCTACAAGCCTAAGGGAATAATGTTCTGCCCAAGCCTTGTCACCAAACTCTGTCGCATGGCTGGCATTGTCCCCGCGCCACCTGATGAAATACGAGCCATGCGTCAAGAGCCAACCCCTGCGGCAGAAAATCAGCCCCCAACTCCTGAACCCCAGCAAAAGAAGAGGCGCAAGCAAACCGCCCGCCGGAATCCTTCAGTGGCGGCAAGGCAAGTGCAAGAAGTGCTTCCAACGCAGGAAACTATTGTCTGCGCTCTCAACCAACAAACCTTGCCGCCACTCCCAGAATCGCCCGTGCGTCGGCCAACTTTTCCAGAAGTGTGCATGGAGACCGTGCATCAATTTCAAGGCCGCGAATAG

Protein sequence

MVKKILPPNIYVDTSKIAIFRLISVIFSSLAAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDEIRAMRQEPTPAAENQPPTPEPQQKKRRKQTARRNPSVAARQVQEVLPTQETIVCALNQQTLPPLPESPVRRPTFPEVCMETVHQFQGRE
Homology
BLAST of Spg030381 vs. NCBI nr
Match: XP_024995361.1 (formin-like protein 3 [Cynara cardunculus var. scolymus])

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-09
Identity = 34/108 (31.48%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 30  LAAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRI 89
           LA +A  G  W  +G A+ LK Q+L  EA  W +++++ I P +HD  L + RV+++Y I
Sbjct: 408 LAKVANEGVVWSFKGRARLLKTQYLKPEANIWCYFMRHTIHPMSHDTNLCLERVLILYCI 467

Query: 90  TNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPD 138
               P D+G ++ ++++    +  G +  PSL+ +L + A ++  P D
Sbjct: 468 LEARPFDVGRMICSNIKACVERTNGKLLYPSLIHRLMQKAQVLALPKD 515

BLAST of Spg030381 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-08
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 26  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVV 85
           + + L  +A  GA W+     A T     L   A  W H++K+H++PTTH  T+S  R++
Sbjct: 132 LITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRML 191

Query: 86  LVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMA 130
           L++ +  G  I++G ++ + +R    +  G +F PSL+T+LCR A
Sbjct: 192 LLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 236

BLAST of Spg030381 vs. NCBI nr
Match: XP_024971944.1 (uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-07
Identity = 32/109 (29.36%), Postives = 63/109 (57.80%), Query Frame = 0

Query: 33  IARPGANWDGRGT--AKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRIT 92
           + + G  WD       +T +A  L   A  W+++I+  + PTTHD+++S+ +++L+Y + 
Sbjct: 310 LGKAGIRWDAHSNYMLRTYRASNLKPNANVWINFIRYSLNPTTHDSSISVEKIILLYCVV 369

Query: 93  NGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDEI 140
            G  I++G ++  ++   + + +G +F PSL+ KL   AG VP   D++
Sbjct: 370 TGRTINVGKVVEKAILYCSKRRQGKLFFPSLIHKLLMQAG-VPEYTDDL 417

BLAST of Spg030381 vs. NCBI nr
Match: KAE8661093.1 (hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 40  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLG 99
           W+GR T++ ++  + L   A  W H++KN +MPT+H+ T+S+ R++L++ I    PID+G
Sbjct: 146 WNGRQTSRYSVNRERLQPRAKLWNHFLKNKLMPTSHNTTVSLSRLLLLHSIMVSRPIDVG 205

Query: 100 PILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDEI 140
            I+   +     K    +  P+L+T LCR   +     DEI
Sbjct: 206 CIIVQQVHDCLGKKASALVFPNLITTLCRKKKVEENAFDEI 246

BLAST of Spg030381 vs. NCBI nr
Match: KAE8676815.1 (hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 40   WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLG 99
            W+GR T++ ++  + L   A  W H++K+ +MPT+H+ T+S+ R++L++ I    PID+G
Sbjct: 985  WNGRQTSRYSVNRENLQLRAKLWNHFLKHKLMPTSHNTTVSLSRLLLLHSIMVSHPIDVG 1044

Query: 100  PILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDEI 140
             I+   +     K    +  P+L+T LCR   +     DEI
Sbjct: 1045 RIIVQQVHDCLSKKASALVFPNLITTLCRKKKVEENAFDEI 1085

BLAST of Spg030381 vs. ExPASy TrEMBL
Match: A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-08
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 26  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVV 85
           + + L  +A  GA W+     A T     L   A  W H++K+H++PTTH  T+S  R++
Sbjct: 132 LITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRML 191

Query: 86  LVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMA 130
           L++ +  G  I++G ++ + +R    +  G +F PSL+T+LCR A
Sbjct: 192 LLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 236

BLAST of Spg030381 vs. ExPASy TrEMBL
Match: A0A6A2WM54 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116939pilonHSYRG00213 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 40  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLG 99
           W+GR T++ ++  + L   A  W H++KN +MPT+H+ T+S+ R++L++ I    PID+G
Sbjct: 146 WNGRQTSRYSVNRERLQPRAKLWNHFLKNKLMPTSHNTTVSLSRLLLLHSIMVSRPIDVG 205

Query: 100 PILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDEI 140
            I+   +     K    +  P+L+T LCR   +     DEI
Sbjct: 206 CIIVQQVHDCLGKKASALVFPNLITTLCRKKKVEENAFDEI 246

BLAST of Spg030381 vs. ExPASy TrEMBL
Match: A0A6A2Y697 (Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111582pilonHSYRG01273 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 33/101 (32.67%), Postives = 58/101 (57.43%), Query Frame = 0

Query: 40   WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLG 99
            W+GR T++ ++  + L   A  W H++K+ +MPT+H+ T+S+ R++L++ I    PID+G
Sbjct: 985  WNGRQTSRYSVNRENLQLRAKLWNHFLKHKLMPTSHNTTVSLSRLLLLHSIMVSHPIDVG 1044

Query: 100  PILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDEI 140
             I+   +     K    +  P+L+T LCR   +     DEI
Sbjct: 1045 RIIVQQVHDCLSKKASALVFPNLITTLCRKKKVEENAFDEI 1085

BLAST of Spg030381 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 34/105 (32.38%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 26  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVV 85
           + + L  +A  GA W+     A T     L   A  W H++K+ ++PTTH   +S  R++
Sbjct: 71  LITVLETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRML 130

Query: 86  LVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMA 130
           L++ + NG  I++G ++ + +R    +  G +F PSL+T+LCR A
Sbjct: 131 LLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

BLAST of Spg030381 vs. ExPASy TrEMBL
Match: A0A2G9FVU6 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30335 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-07
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 0

Query: 31  AAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRIT 90
           A I RP  +W+       +    L  EA  W+ +I   + P++H + +S  R +L+Y I 
Sbjct: 112 AFIQRP-PSWEAISEPVGIPRSSLTNEAWDWLRFINARLYPSSHLSEVSKDRAILLYAIL 171

Query: 91  NGIPIDLGPILSNSLRQTTYKPKGI-MFCPSLVTKLCRMAGIVPAPPDEIRAMRQEPTPA 150
            G+P+D+G  ++ ++ ++      + M+ PSLVT LC+  G+V  P DE+  ++ + T  
Sbjct: 172 TGVPLDIGRYINGAILKSARGGMTVSMYFPSLVTALCQQEGLVNLPGDEL--IQPDTTVN 231

Query: 151 AENQPPTPEPQQKKRRKQTAR 171
            EN+ P P P    RR++  R
Sbjct: 232 EENRAPPPPPPPAHRRQRRPR 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024995361.11.5e-0931.48formin-like protein 3 [Cynara cardunculus var. scolymus][more]
PON35554.18.2e-0833.33hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
XP_024971944.11.8e-0729.36uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus][more]
KAE8661093.12.4e-0733.66hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus][more]
KAE8676815.12.4e-0732.67hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5AGA54.0e-0833.33Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A6A2WM541.1e-0733.66Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116939pilon... [more]
A0A6A2Y6971.1e-0732.67Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 G... [more]
A0A2P5DXM31.5e-0732.38Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
A0A2G9FVU62.0e-0730.50Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30335 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030381.1Spg030381.1mRNA