Spg018661 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg018661
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold3: 20650225 .. 20652362 (+)
RNA-Seq Expression	Spg018661
Synteny	Spg018661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATCGGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAGAAGAACTAAGAGGTGAGGTCTGATTTTCTTGAATGTTAATCCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCTGATGATAAGTTAATGGTTTTTGAAATGGAAAATAGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTGTTCGAGCATTCTGGGGTGTACAAGTTGAATAAGAAGCTCCATTTGGTATAGTTGGAAAGCTTATTCCATTTCCATAACCTTCATGAAGAATTTGTGAGCCACAAATGACTTGAAGTAGGTTTAATTTCAGGAGAAAGATAGAGGGTAGTAGAGAAGCTTGATTATGTGTTTTCTGTGTTCAGGGCATTTCTGGACAAATCGGTTGGGAATCTCGTTTAATTTCTTCAAGTAAGTTGTAGAGTGTTCGAAAACGAAGAGTTAGATATATAGTACATTAATTTTGGTCAAGTGTTGAGGACGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATATGGAAAAGTAGAATGTGAAGTGTGATTTTTGATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAAAACTACTTATGGTTCTAATGCTCGGTTTTCATTGTTTGACAGGCCAATAGGAAATAGGCCGAGTCTATGGACCAGGAAACTAGCCAAGACTGTGAGTGACAAAACAAAGTTCGAAAATTGTTTCTAAACGATTGTTCATGATTAGATGTTTTATATGTTTTTCTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACAAGCACGTGGTTAATGACTATATGAAAAGTAGGTGAAACGATATCATTTGAAGTAAAGTATGTATTAGCAAGTAATGTTTAAAGATTTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATTTTTTCATGTGATTTTCTTAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCTTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGTCCCACTACGACAAAGACGACGGGAGTGCTAGGCGGGCCCCACTACATCGTAGAGCTACTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAGATGTTTGATATATTTGATATGCCTTGCTAGATTTTCTAACGACGTACTTGTGGAGTATTCGTGAAAGCTTTTATCATTATACGTTTATGTTTAACGCTTTGATTGAGCAACCTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATTTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTGTATTGTAAATGTCTTTGTAAGGATTGGATAATTTACGGTTTGTGTAAGTTCTAGAGGTCGTGGTTGTATAAACCCCTATTGATATGTTTTTGGTTGTGATATCTATATAGGTTATTTTCCAAACCGAGTTATGTCAGGGCTGCACCCCATGTATGTCTAAAGATTTCAGGGATTCCGCTGTGTTGTGTTGCATGTAAAGTATTCCATATCTAAGATTAGCATGTTTATCAGGTTCAGCGATTCAGCAAGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAACAGGTAGTTTGGGAGGGAGTGTGACAACTTGGTATCAGAGCAGTTAGCTCCATGGGAAATGAGACATGGTAGTTAGTGTTAAGAAGAATCTAGGAAGTGAATAGTTAGACGTTGTGTCCGTTCAGATAGAACTAGCGGAGTACGGCCCAAGTATTGTCAAGAGTGGGTCCAGTCAGGACTAGAATGTGGGTAG

mRNA sequence

ATGGCAGAATCGGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAGAAGAACTAAGAGGCCAATAGGAAATAGGCCGAGTCTATGGACCAGGAAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAGCGATTCAGCAAGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAACAGATAGAACTAGCGGAGTACGGCCCAAGTATTGTCAAGAGTGGGTCCAGTCAGGACTAGAATGTGGGTAG

Coding sequence (CDS)

ATGGCAGAATCGGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAAGAAGAACTAAGAGGCCAATAGGAAATAGGCCGAGTCTATGGACCAGGAAACTAGCCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTTCAGCGATTCAGCAAGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAACAGATAGAACTAGCGGAGTACGGCCCAAGTATTGTCAAGAGTGGGTCCAGTCAGGACTAGAATGTGGGTAG

Protein sequence

MAESGFNLPISGFLFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWVQSGLECG

Homology

[Close]

BLAST of Spg018661 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-09
Identity = 53/145 (36.55%), Postives = 64/145 (44.14%), Query Frame = 0


Query: 1   MAESGFNLPISGFLFGLSYTRRTK----------------------RPIGNRPSLWTRKL 60
           +AESG N      LFGLSY    +                       P GNRP+L T KL
Sbjct: 32  IAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKL 91

Query: 61  AKTVEIELPVPDTLPTSAESSSSSSSSAIQ--------------------------QGQQ 98
            KTVEIELPVPDTLPTSAESS S+SS+ ++                          +G  
Sbjct: 92  DKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASYVCWEGSA 151

[Close]

BLAST of Spg018661 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 14 LFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ 69
          LF LSY   TKRP GNRPSL T KL KTVEIELP+PDTLPT AES  S+SS+ ++
Sbjct: 19 LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLE 73

[Close]

BLAST of Spg018661 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 49/130 (37.69%), Postives = 56/130 (43.08%), Query Frame = 0


Query: 14  LFGLSYTRRTKRPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSA 73
           LFGL Y   TKRP GNR SL T +L KT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 74  ESSSSSSSS-----------------------------AIQQGQQVSLEEDDVCWLHAIS 98
           ESS S+SS+                              +  G    +  D+VCWLHA+ 
Sbjct: 79  ESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVF 138

[Close]

BLAST of Spg018661 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-07
Identity = 45/91 (49.45%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 25  RPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSA 84
           RP GNRPSL T KL KT                 VEIELPVPDTLPTSAES  S+S S+ 
Sbjct: 54  RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRSTG 113

Query: 85  IQQGQQVSLEEDDVCWLHAISLTKLTDRTSG 98
           I +G       DDVCWLHA+   K      G
Sbjct: 114 IVRG-------DDVCWLHAVFRAKTAGGPGG 137

[Close]

BLAST of Spg018661 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-07
Identity = 49/102 (48.04%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 26  PIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSA-I 85
           P GNR SL T KL KT                 VEIELPVPDT PTSAESS S+SSSA I
Sbjct: 182 PRGNRSSLQTGKLDKTVIFPLSMLSVLRDNDVVVEIELPVPDTHPTSAESSESNSSSAGI 241

Query: 86  QQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWVQS 110
            +G       DDVCWLHA+   K+   T    P  C   V+S
Sbjct: 242 VRG-------DDVCWLHAVFRAKICFLT----PNECSPLVRS 272

[Close]

BLAST of Spg018661 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 53/145 (36.55%), Postives = 64/145 (44.14%), Query Frame = 0


Query: 1   MAESGFNLPISGFLFGLSYTRRTK----------------------RPIGNRPSLWTRKL 60
           +AESG N      LFGLSY    +                       P GNRP+L T KL
Sbjct: 32  IAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKL 91

Query: 61  AKTVEIELPVPDTLPTSAESSSSSSSSAIQ--------------------------QGQQ 98
            KTVEIELPVPDTLPTSAESS S+SS+ ++                          +G  
Sbjct: 92  DKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHVEMLFYKPSDVRVASYVCWEGSA 151

[Close]

BLAST of Spg018661 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 14 LFGLSYTRRTKRPIGNRPSLWTRKLAKTVEIELPVPDTLPTSAESSSSSSSSAIQ 69
          LF LSY   TKRP GNRPSL T KL KTVEIELP+PDTLPT AES  S+SS+ ++
Sbjct: 19 LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLE 73

[Close]

BLAST of Spg018661 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 49/130 (37.69%), Postives = 56/130 (43.08%), Query Frame = 0


Query: 14  LFGLSYTRRTKRPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSA 73
           LFGL Y   TKRP GNR SL T +L KT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 74  ESSSSSSSS-----------------------------AIQQGQQVSLEEDDVCWLHAIS 98
           ESS S+SS+                              +  G    +  D+VCWLHA+ 
Sbjct: 79  ESSGSNSSTWLELNFEFVHVEIFYYFTNQVMSGLHLVFNVSVGSTRIVRGDNVCWLHAVF 138

[Close]

BLAST of Spg018661 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 45/91 (49.45%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 25  RPIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAES-SSSSSSSA 84
           RP GNRPSL T KL KT                 VEIELPVPDTLPTSAES  S+S S+ 
Sbjct: 54  RPRGNRPSLQTGKLDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRSTG 113

Query: 85  IQQGQQVSLEEDDVCWLHAISLTKLTDRTSG 98
           I +G       DDVCWLHA+   K      G
Sbjct: 114 IVRG-------DDVCWLHAVFRAKTAGGPGG 137

[Close]

BLAST of Spg018661 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 49/102 (48.04%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 26  PIGNRPSLWTRKLAKT-----------------VEIELPVPDTLPTSAESSSSSSSSA-I 85
           P GNR SL T KL KT                 VEIELPVPDT PTSAESS S+SSSA I
Sbjct: 182 PRGNRSSLQTGKLDKTVIFPLSMLSVLRDNDVVVEIELPVPDTHPTSAESSESNSSSAGI 241

Query: 86  QQGQQVSLEEDDVCWLHAISLTKLTDRTSGVRPKYCQEWVQS 110
            +G       DDVCWLHA+   K+   T    P  C   V+S
Sbjct: 242 VRG-------DDVCWLHAVFRAKICFLT----PNECSPLVRS 272

The following BLAST results are available for this feature:

BLAST of Spg018661 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052218.1	2.8e-09	36.55	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0040420.1	1.1e-08	69.09	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0051980.1	3.5e-07	37.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0060199.1	3.5e-07	49.45	uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9...	[more]
TYK01208.1	4.5e-07	48.04	uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]	[more]

BLAST of Spg018661 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg018661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	1.4e-09	36.55	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7TAS6	5.2e-09	69.09	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7U9X4	1.7e-07	37.69	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BAD1	1.7e-07	49.45	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BQ75	2.2e-07	48.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg018661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg018661.1	Spg018661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016787	hydrolase activity