Spg012636 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg012636
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Locationscaffold1: 12078100 .. 12081390 (+)
RNA-Seq ExpressionSpg012636
SyntenySpg012636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGAAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCATAGCGGGGCATCGGCTACATCTGTGCAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAAGTCAAAACCTCACATTTCCCATTCCTGAGCAAGTCCACTCCTATGCACAACAGGGGCAATATAAGGTTGATCCCATTCGCGAGTCAGGAAATTTGGGAAACGGGCTAGAGAATAGTGAAAACACTTCATCTAAAGGGAAGTTGGATTTTTTAGAGGAAAGATTGAGGGCAATAGAGGGTGCTGACGCATTTGGGAGCATAGATGCAACACAACTATGTTTGGTTCCTGATGTTGTTATCCCTCAAAAATTCAAGTTACCCGAGTTCGAGAAGTATGATGGGACATCTTGTCCAAGAAACCATTTGATTATGTATTGCAGGAAGATGGCTGCACACGTCCAAGATGAAAAGTTACTTATGCATTTTTTTCAAGATAGTTTGACAGGACCAGCATCCCGATGGTACATACAATTGAATAGAGCTCATGTTCAAAAATGGAAGGACCTGGCAGATCTTTTTCTCAAACAATATAAACATAATCTGGATATGGCTCCAGACCGTTTAGATCTCCAGCGACTAGAAAAGAAGAGTACTGAGAATTTTAAGGAGTATGCGCAAAGATGGAGAGAAATGGCAGCCCAAATTCAGCCGCCACTTACAGATAAAGAATTAACGACCATGTTCATACATACGCTTCGATCCCCTTACTACGATCGTATGATTGGGAACGCTTCCACGAATTTTTCAGATATCATAACCATCGGAGAAAGAATCGAGTATGGAGTGAAATATGGAAAAATTGTTGACATAGTATCAGACTCGAACCAGAAAAGAAGTATTCTTCCAAAAAAGAAAGAGGGTGAAGTCCATGAGATAAGTTATAGTCAAAAGCTACCATTTAGCAGTCAAACGATGGTACACCACCCAGCAGCAAATAACATGAACCAGAGTTCATATAATAACTCATATGTGTCAGGACAGGGTTGTCAGACGGTACAGGGACAAATGAATTATTCGTCAGGTGCTCAAAATTCCAACTCGTCGAGTGCTCAACGAGTTTTTAGAAGCAATTTGAGGAGCTTTGATCCCATCCCTGTAACTTATACAGAGCTTCTCCCCCAGTTGATTCAAAATAAGCAGCTTGTTCCAATACATATGGAACCTGTGCAACCACCATACCCAAAATGGTACAAGCCAAATGCAAGATGTGACTATCATTCGGGAGCAGTGGGACATTCAACAGAAAATTGTTTTACTCTCAAGGGAAAGGTGCAAGATTTGATAAGATCCGGTTGGCTGAAATTTAAAAAGGCAGAAGAGACACCAGATATCACACAAAATCCACTCCCTAATCATGGCAACCCAGCAGTCAATGTCATTCATGTCTCATCAGAATGTGAAGGAGAGTCGAACTTTGTATATCAATGTTCAAAGGATGATTGTTTATCCTACAGTGAAGTAGTGATGTGCTTAATGCAGGAAAAGGAACCAGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCGCAGTAAAAGATTTGTGTAAGCCAAAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAGACAACAAAGCAGTACCATGGAATTATGGTTGTCATAGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTATGACAAGGAGTGGAAGGTGCTATAAGCCAGAAATCTTAAAAGCACCACCAGTGGAAAGCCAACAAAACCCCCAAGTTGAAAAAGGAAAAGAGAAGGAATATTTTATAGAAGATCAAGAGGAAATTTGGAATGAAGAGCCTATCATAACTAAGGGTAGCTCATCCAAGAAAGTTGTATCTGATGAAGAGGCTTGTGAATTCTTGAAGTTGATCAAGCATAGTGAATATAAGGTGATCGAACAACTGCATCGCACACCAGCTCGCATATCCATATTGTCACTGTTCTTAAATTCAGAGCCACACCGTAAAGCTTTAATGGATGTTTTGAACCAAGCACATGTGAATCATGACATCACTGTAGAAAAGTTGGGTGGAATTGTGGGAAACATCACTGCTTCCAACACTATTACTTTTACAGACGAAGAGATTCCACCAGAAGGTATGGGTCATACTAAAGCACTGCACATAGTTGTAAAGTGCAAAGATTATGCGATAGCTAAAGTCCTTGTTGATAATGGGGCCTCTTTAAACGTGATGCCAATGTCCACACTACTAAAGCTACCTGTAGATCCATCCCATATTAAACACAGCAGCACTGTAGTAAGAGCTTTCGACGGGACTCGTAGAGAAGTTGTGGGCGAAATTGAGTTACCCATTAAAATTGGACCTCGCACCTTCAACGTGACATTTCAAGTGATGGACATAACTTCGGCCTATAGTTGTCTATTGGGGAGGCCTTGGATTCATTCAGCTGGGGTTATTCCATCAACTCTGCATCAGCGTTTAAAGTTTGTTTTCGAGAATACTCTGGTAAGCATATTCGGCCAAGAAGATGTGTTGGTCACTAAATCTACTGCAACCCCTTATGTGGAGGCAGCAGAAGAAGCTTTGGAATGTTCTTTCCAATCTTTTGAGATAGCAAATGCTACTATTTTTACCCATGTTGAGGATCGAGGTCTAGAACAGTCTTTGTCAAGAGCTTCAATGATGGTTGCAAAAACCATGATGAAAGAAGGATTTGAACCTGGTGAAGGCCTAGGAAAATATCAACAAGGGAGAAAACAACCAATATGTCTGCCCAAGGCTGTTGAAAAGTTCGGTTTAGGTTATAAGCCAACTGTTGTGGACTGGAAGAATGTCCAAGAAGAAAAAAGAAAGCAAAGGAGCGCCAGATTAGAAAATCGAGAAGTAAGTACCAAAAGGATGAGCATACCTCATCTCTACGAGACTTTTAAGAAGAGCAAAACCGAAGCAGACAAGTTAGTATTAGAGATGTCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGAATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA

mRNA sequence

ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGAAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCATAGCGGGGCATCGGCTACATCTGTGCAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAAGTCAAAACCTCACATTTCCCATTCCTGAGCAAGTCCACTCCTATGCACAACAGGGGCAATATAAGGAAAAGGAACCAGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCGCAGTAAAAGATTTGTGTAAGCCAAAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAGACAACAAAGCAGTACCATGGAATTATGGTTGTCATAGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTATGACAAGGAGTGGAAGCATACCTCATCTCTACGAGACTTTTAAGAAGAGCAAAACCGAAGCAGACAAGTTAGTATTAGAGATGTCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGAATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA

Coding sequence (CDS)

ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGAAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCATAGCGGGGCATCGGCTACATCTGTGCAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAAGTCAAAACCTCACATTTCCCATTCCTGAGCAAGTCCACTCCTATGCACAACAGGGGCAATATAAGGAAAAGGAACCAGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCGCAGTAAAAGATTTGTGTAAGCCAAAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAGACAACAAAGCAGTACCATGGAATTATGGTTGTCATAGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGGTATGACAAGGAGTGGAAGCATACCTCATCTCTACGAGACTTTTAAGAAGAGCAAAACCGAAGCAGACAAGTTAGTATTAGAGATGTCAGATTTATCCATCACCGCCATCATTGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGAATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA

Protein sequence

MSKILEILTAQKGKSTAETHELEDVAPPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGASQNLTFPIPEQVHSYAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVESVDSLVYKCPPGFELCNWESTELPIHFEEAQE
Homology
[Close]
BLAST of Spg012636 vs. NCBI nr
Match: XP_022157707.1 (uncharacterized protein LOC111024360 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-23
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 0 

Query: 90  EIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKA 149
           E H VNM+  E+ + K   K +PLV+ FKEQ + +  + +I QPLTIQ+PS YKYKDNKA
Sbjct: 543 EAHFVNMVTEEEASSKYSFKLEPLVVIFKEQPTIISANSSILQPLTIQLPSPYKYKDNKA 602

Query: 150 VPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTE 195
           VPW+YGCH+L+EE +IVTNIS +SGMTRSG I +  ET K S+ +
Sbjct: 603 VPWHYGCHTLDEEVSIVTNISRVSGMTRSG-ICYKLETLKASQVD 646

[Close]
BLAST of Spg012636 vs. NCBI nr
Match: XP_022157707.1 (uncharacterized protein LOC111024360 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-09
Identity = 42/90 (46.67%), Postives = 48/90 (53.33%), Query Frame = 0 

Query: 1   MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYT 60
           M+KIL++L AQKGK   E     DV           PGFTP V  H+G +    QPIFYT
Sbjct: 23  MTKILDLLMAQKGKLVVEEPHASDVVRGLDDTSLYAPGFTPQVHPHNGMTTIPGQPIFYT 82

Query: 61  HAPQMPPLGGGASQNLTFPIPEQVHSYAQQ 82
             P M   G GA QN TF + EQVH   QQ
Sbjct: 83  QTPPMVSFGEGAVQNQTFMVSEQVHPLVQQ 112


HSP 2 Score: 73.6 bits (179), Expect = 2.8e-09
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 0 

Query: 110 PKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYG---CHSLNEE---A 169
           PKPLV+ +    + +  D    +P+TIQ+P ++ YKDNK VPW YG   C   +EE   A
Sbjct: 183 PKPLVVHYTRGKNILNVDR--PKPITIQVPRAFPYKDNKVVPWRYGAKVCIDASEERLDA 242

Query: 170 AIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVLEMSDLSITAIIEEHVE 217
             +TN++GI GMTRSG I  L E   K   E +K   +  ++    +I+E  E
Sbjct: 243 TDITNVAGIGGMTRSGRIYTLEELKIKQAKEVEKSHEKGKEVVDERVIKEQEE 293

[Close]
BLAST of Spg012636 vs. NCBI nr
Match: TYK21788.1 (uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-09
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 0 

Query: 78  YAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQ 137
           Y  QG+ + K+ +I +   ++ E +  KD   P+PL +F++E      T     + LTIQ
Sbjct: 533 YRGQGKDEMKDSKICA---LMDEVSEKKDSFLPRPLTVFYQES-HNESTSFCNPKKLTIQ 592

Query: 138 IPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADK 197
           +PS +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG     Y+         D 
Sbjct: 593 VPSPFKFKDLKAVPWRYDCQVITGPS--VDNITGISGITRSG---RCYKP-DNLTVPLDG 652

Query: 198 LVLEMSDLSITAIIEEHVESVD 220
           L+LE    +    ++EH +  D
Sbjct: 653 LILEQGRKNEKTNVKEHCKDQD 664

[Close]
BLAST of Spg012636 vs. NCBI nr
Match: KAA0046213.1 (uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-09
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 0 

Query: 81  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPS 140
           +GQ K+ E +   +  ++ E +  KD   P+PL +F++E  +G  T     + L IQ+PS
Sbjct: 180 RGQEKD-EMKDSKMCALMDEVSEKKDSFLPRPLTVFYQESHNG-STSFCNPKKLPIQVPS 239

Query: 141 SYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVL 200
            +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG     Y+        +D L+L
Sbjct: 240 PFKFKDLKAVPWRYDCQVITGPS--VDNITGISGITRSG---RCYKP-DNLTVPSDGLIL 299

Query: 201 EMSDLSITAIIEEHVESVD 220
           E    +    ++EH +  D
Sbjct: 300 EQGRKNEKRNVKEHCKDQD 310

[Close]
BLAST of Spg012636 vs. NCBI nr
Match: EOY10242.1 (Uncharacterized protein TCM_025612 [Theobroma cacao])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 76/269 (28.25%), Postives = 118/269 (43.87%), Query Frame = 0 

Query: 1   MSKILEILTAQKGKSTAETHEL-----------EDVAPPGFT-----------PSVPQHS 60
           +SKILE+++  KGK  A +  +           + V PPGFT           PS+ Q+S
Sbjct: 4   LSKILELMSTDKGKRVAGSSSVSKDVQQTEANTDPVYPPGFTLPLARNASIPMPSIGQYS 63

Query: 61  --GASATSVQPIFYTHAPQMPPLGGGASQNLTFP------IPEQVHSYAQQGQYKEKEPE 120
             G    +  P   T+A Q P  G   S  ++ P        E+++S+ ++ Q    E  
Sbjct: 64  FFGMLVPTGPP--PTYAQQRPIRGASPSDPISVPDLDDLKEQEKLNSFRKKVQRMMDESR 123

Query: 121 IH--------SVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSY 180
           I         +VNM+  + T      K KPL IF++++  G   +      +TI++P  +
Sbjct: 124 IEFYVEASRPAVNMMAKDST---HPTKIKPLTIFYEQR--GEFVENRTHAQMTIEVPKPF 183

Query: 181 KYKDNKAVPWNYGCHS--------LNEEAAIVTNISGISGMTRSGS--IPHLYETFKKSK 222
            YKD+KAVPWNY  +         + E     TNI+ +  +TRSG    P   E  KK K
Sbjct: 184 PYKDDKAVPWNYNFNVQVLKARKWMVESQDNATNITSVGRITRSGCCYTPEALENLKKEK 243

[Close]
BLAST of Spg012636 vs. ExPASy TrEMBL
Match: A0A6J1DV70 (uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024360 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.6e-24
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 0 

Query: 90  EIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKA 149
           E H VNM+  E+ + K   K +PLV+ FKEQ + +  + +I QPLTIQ+PS YKYKDNKA
Sbjct: 543 EAHFVNMVTEEEASSKYSFKLEPLVVIFKEQPTIISANSSILQPLTIQLPSPYKYKDNKA 602

Query: 150 VPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTE 195
           VPW+YGCH+L+EE +IVTNIS +SGMTRSG I +  ET K S+ +
Sbjct: 603 VPWHYGCHTLDEEVSIVTNISRVSGMTRSG-ICYKLETLKASQVD 646

[Close]
BLAST of Spg012636 vs. ExPASy TrEMBL
Match: A0A6J1DV70 (uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024360 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 42/90 (46.67%), Postives = 48/90 (53.33%), Query Frame = 0 

Query: 1   MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYT 60
           M+KIL++L AQKGK   E     DV           PGFTP V  H+G +    QPIFYT
Sbjct: 23  MTKILDLLMAQKGKLVVEEPHASDVVRGLDDTSLYAPGFTPQVHPHNGMTTIPGQPIFYT 82

Query: 61  HAPQMPPLGGGASQNLTFPIPEQVHSYAQQ 82
             P M   G GA QN TF + EQVH   QQ
Sbjct: 83  QTPPMVSFGEGAVQNQTFMVSEQVHPLVQQ 112


HSP 2 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 0 

Query: 78  YAQQGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQ 137
           Y  QG+ + K+ +I +   ++ E +  KD   P+PL +F++E      T     + LTIQ
Sbjct: 533 YRGQGKDEMKDSKICA---LMDEVSEKKDSFLPRPLTVFYQES-HNESTSFCNPKKLTIQ 592

Query: 138 IPSSYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADK 197
           +PS +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG     Y+         D 
Sbjct: 593 VPSPFKFKDLKAVPWRYDCQVITGPS--VDNITGISGITRSG---RCYKP-DNLTVPLDG 652

Query: 198 LVLEMSDLSITAIIEEHVESVD 220
           L+LE    +    ++EH +  D
Sbjct: 653 LILEQGRKNEKTNVKEHCKDQD 664

[Close]
BLAST of Spg012636 vs. ExPASy TrEMBL
Match: A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 0 

Query: 81  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPS 140
           +GQ K+ E +   +  ++ E +  KD   P+PL +F++E  +G  T     + L IQ+PS
Sbjct: 180 RGQEKD-EMKDSKMCALMDEVSEKKDSFLPRPLTVFYQESHNG-STSFCNPKKLPIQVPS 239

Query: 141 SYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVL 200
            +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG     Y+        +D L+L
Sbjct: 240 PFKFKDLKAVPWRYDCQVITGPS--VDNITGISGITRSG---RCYKP-DNLTVPSDGLIL 299

Query: 201 EMSDLSITAIIEEHVESVD 220
           E    +    ++EH +  D
Sbjct: 300 EQGRKNEKRNVKEHCKDQD 310

[Close]
BLAST of Spg012636 vs. ExPASy TrEMBL
Match: A0A061F0Q6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025612 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 76/269 (28.25%), Postives = 118/269 (43.87%), Query Frame = 0 

Query: 1   MSKILEILTAQKGKSTAETHEL-----------EDVAPPGFT-----------PSVPQHS 60
           +SKILE+++  KGK  A +  +           + V PPGFT           PS+ Q+S
Sbjct: 4   LSKILELMSTDKGKRVAGSSSVSKDVQQTEANTDPVYPPGFTLPLARNASIPMPSIGQYS 63

Query: 61  --GASATSVQPIFYTHAPQMPPLGGGASQNLTFP------IPEQVHSYAQQGQYKEKEPE 120
             G    +  P   T+A Q P  G   S  ++ P        E+++S+ ++ Q    E  
Sbjct: 64  FFGMLVPTGPP--PTYAQQRPIRGASPSDPISVPDLDDLKEQEKLNSFRKKVQRMMDESR 123

Query: 121 IH--------SVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSY 180
           I         +VNM+  + T      K KPL IF++++  G   +      +TI++P  +
Sbjct: 124 IEFYVEASRPAVNMMAKDST---HPTKIKPLTIFYEQR--GEFVENRTHAQMTIEVPKPF 183

Query: 181 KYKDNKAVPWNYGCHS--------LNEEAAIVTNISGISGMTRSGS--IPHLYETFKKSK 222
            YKD+KAVPWNY  +         + E     TNI+ +  +TRSG    P   E  KK K
Sbjct: 184 PYKDDKAVPWNYNFNVQVLKARKWMVESQDNATNITSVGRITRSGCCYTPEALENLKKEK 243

[Close]
BLAST of Spg012636 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 48/139 (34.53%), Postives = 74/139 (53.24%), Query Frame = 0 

Query: 81  QGQYKEKEPEIHSVNMIIGEDTAVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPS 140
           +GQ K+ E +   +  ++ E +  KD   P+PL +F++E      T     + LTIQ+PS
Sbjct: 326 RGQEKD-EMKDSKMCALMDEVSEKKDSFLPRPLTVFYQES-HNESTSFCNPKKLTIQVPS 385

Query: 141 SYKYKDNKAVPWNYGCHSLNEEAAIVTNISGISGMTRSGSIPHLYETFKKSKTEADKLVL 200
            +K+KD KAVPW Y C  +   +  V NI+GISG+TRSG     Y+        +D L+L
Sbjct: 386 PFKFKDLKAVPWRYDCQVITGPS--VDNITGISGITRSG---RCYKP-DNLTVPSDGLIL 445

Query: 201 EMSDLSITAIIEEHVESVD 220
           E    +    ++EH +  D
Sbjct: 446 EQGRKNEKRNVKEHCKDQD 456

The following BLAST results are available for this feature:
BLAST of Spg012636 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157707.11.2e-2357.14uncharacterized protein LOC111024360 [Momordica charantia][more]
XP_022157707.13.6e-0946.67uncharacterized protein LOC111024360 [Momordica charantia][more]
TYK21788.13.6e-0934.51uncharacterized protein E5676_scaffold1721G00440 [Cucumis melo var. makuwa][more]
KAA0046213.18.1e-0934.53uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa][more]
EOY10242.11.1e-0828.25Uncharacterized protein TCM_025612 [Theobroma cacao][more]
BLAST of Spg012636 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg012636 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DV705.6e-2457.14uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DV701.8e-0946.67uncharacterized protein LOC111024360 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5A7TRL73.9e-0934.53Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010... [more]
A0A061F0Q65.1e-0928.25Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025612 PE=4 SV=1[more]
A0A5A7T7R45.1e-0934.53Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282... [more]
BLAST of Spg012636 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg012636.1Spg012636.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process