Spg004319 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004319
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold5: 18162440 .. 18163852 (+)
RNA-Seq Expression	Spg004319
Synteny	Spg004319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGACAAGAGGGAGGAGAGAAAGAGATGCTGAGGAGGAGGAAGTTCCGATTACGCCTGAGACACCGAAGAATAGAACGAAGAGAAGGAAGACACCAGAAGAAAGAGAGGCTAAGAGACGGAGAAGGCAACAACGAGCTGAGGTCGCGAAAGTAGTACGGAAAGTGGTCGAAGACATTGCTGAAGAAGCAGTTGAGGAAGAACAACTAAAAGACCCTGAAGAAAAGAAAGATTCGGAACAAGAAGAACAGACAGTCGGAACTCAGGAAGAGGGGCAAGACAAGCGAGCAGAAGATATGCAAGGGCAAGGTAATGGGCAGGAACAACAGACTCAAGAAGTTGTGTCGGAGGTACCACGTCGTCGCCGCCGCAAGCAAAAGGCGGGACGGATTAAGGTAATCAGGACGGACACTCCATCTCCATCAACGACAGAGTCTGAGAAGGAAAATTCTGAGAAAGAAGAGCAAGAGAAAAAAGAGGCTGAGAAGAAAACGGAAGAAGAAGATCTGACGAAGCAGTAAGAAGACAAAGGCAAAGGCGTTGCTGAAGCACCGACAGAAACAGAGGAGGCTGAAACCGATGAACTGAGACTGCCGTATGATCGCTTCATCAACGATCTTGCCCGAGCAAAATATTTAGAGATGCTGAAGAAGGATTTTCTGTTTGAGAGAGGATTTGGCGATGACCTACCGCATTTCTGACGAGCTGGAATTACAAATCACGGATGGGATCAGTTTTGCGCGAAACCAGAGCCGGTGAATTGAAATGTTGTTCGTGAATTTTATGCGAACATAGATGAAGAAGAAGGGTTTCAAGCAATATTTTGTGGGGTAGTAGTAGACTGGAGCCCCGGTGCGGTAAATTCTTTATTTAACCTTCAAGATTTCCCACATGCCGGGTATAATGAGATGGCGACAGCGCCATCCAATGAGCAGTTGAATGCATCTGTTCGAGAGGTGGGAATTGAGGGGGCTCAGTGGTGATTGTCAAAGACAGAAAAGAGGACCTTCCTAGCGGCTTATCTCAAGAGTGAAGCCAACACTTGGTTGGGGTTCATCAAACTGCGTCTGCTGCCGACAACCCACGACTCTACTGTCTCAATTGATCGAGTTCTTCTGGTATTTGCGATTCTGAGGTCATTAAGTATAGATGTCGGAAAAATTATATCCAGTGAAATTTATTCCTATTGCAGGAAGAAGGTGGGTAAGCTCTTTTTCCCAAACACAATAACTATGCTGTGTCAAAGAGTTGGGGTTCCTACGAGTGCAGAGGATGTTATTCTGATGGATAAGGGAATAATTGACACACCGAACCTGGCAAGGCTTCAGAGGACTCAGGAAGCATGCCAAGGCGGTTTGGTGTGTGGCATCCACAAAATTCAAGAACAACTGCAAATGCATTCCAGCTGA

mRNA sequence

ATGGCTAAGACAAGAGGGAGGAGAGAAAGAGATGCTGAGGAGGAGGAAGTTCCGATTACGCCTGAGACACCGAAGAATAGAACGAAGAGAAGGAAGACACCAGAAGAAAGAGAGGCTAAGAGACGGAGAAGGCAACAACGAGCTGAGGTCGCGAAAGTAGTACGGAAAGTGGTCGAAGACATTGCTGAAGAAGCAGTTGAGGAAGAACAACTAAAAGACCCTGAAGAAAAGAAAGATTCGGAACAAGAAGAACAGACAGTCGGAACTCAGGAAGAGGGGCAAGACAAGCGAGCAGAAGATATGCAAGGGCAAGGTAATGGGCAGGAACAACAGACTCAAGAAGTTGTGTCGGAGGTACCACGTCGTCGCCGCCGCAAGCAAAAGGCGGGACGGATTAAGGTAATCAGGACGGACACTCCATCTCCATCAACGACAGAGTCTGAGAAGGAAAATTCTGAGAAAGAAGAGCAAGAGAAAAAAGAGGCTGAGAAGAAAACGGAAGAAGAAGATCTGACGAAGCAAGAGGATTTGGCGATGACCTACCGCATTTCTGACGAGCTGGAATTACAAATCACGGATGGGATCAGTTTTGCGCGAAACCAGAGCCGGAAGAAGGTGGGTAAGCTCTTTTTCCCAAACACAATAACTATGCTGTGTCAAAGAGTTGGGGTTCCTACGAGTGCAGAGGATGTTATTCTGATGGATAAGGGAATAATTGACACACCGAACCTGGCAAGGCTTCAGAGGACTCAGGAAGCATGCCAAGGCGGTTTGGTGTGTGGCATCCACAAAATTCAAGAACAACTGCAAATGCATTCCAGCTGA

Coding sequence (CDS)

ATGGCTAAGACAAGAGGGAGGAGAGAAAGAGATGCTGAGGAGGAGGAAGTTCCGATTACGCCTGAGACACCGAAGAATAGAACGAAGAGAAGGAAGACACCAGAAGAAAGAGAGGCTAAGAGACGGAGAAGGCAACAACGAGCTGAGGTCGCGAAAGTAGTACGGAAAGTGGTCGAAGACATTGCTGAAGAAGCAGTTGAGGAAGAACAACTAAAAGACCCTGAAGAAAAGAAAGATTCGGAACAAGAAGAACAGACAGTCGGAACTCAGGAAGAGGGGCAAGACAAGCGAGCAGAAGATATGCAAGGGCAAGGTAATGGGCAGGAACAACAGACTCAAGAAGTTGTGTCGGAGGTACCACGTCGTCGCCGCCGCAAGCAAAAGGCGGGACGGATTAAGGTAATCAGGACGGACACTCCATCTCCATCAACGACAGAGTCTGAGAAGGAAAATTCTGAGAAAGAAGAGCAAGAGAAAAAAGAGGCTGAGAAGAAAACGGAAGAAGAAGATCTGACGAAGCAAGAGGATTTGGCGATGACCTACCGCATTTCTGACGAGCTGGAATTACAAATCACGGATGGGATCAGTTTTGCGCGAAACCAGAGCCGGAAGAAGGTGGGTAAGCTCTTTTTCCCAAACACAATAACTATGCTGTGTCAAAGAGTTGGGGTTCCTACGAGTGCAGAGGATGTTATTCTGATGGATAAGGGAATAATTGACACACCGAACCTGGCAAGGCTTCAGAGGACTCAGGAAGCATGCCAAGGCGGTTTGGTGTGTGGCATCCACAAAATTCAAGAACAACTGCAAATGCATTCCAGCTGA

Protein sequence

MAKTRGRRERDAEEEEVPITPETPKNRTKRRKTPEEREAKRRRRQQRAEVAKVVRKVVEDIAEEAVEEEQLKDPEEKKDSEQEEQTVGTQEEGQDKRAEDMQGQGNGQEQQTQEVVSEVPRRRRRKQKAGRIKVIRTDTPSPSTTESEKENSEKEEQEKKEAEKKTEEEDLTKQEDLAMTYRISDELELQITDGISFARNQSRKKVGKLFFPNTITMLCQRVGVPTSAEDVILMDKGIIDTPNLARLQRTQEACQGGLVCGIHKIQEQLQMHSS

Homology

The following BLAST results are available for this feature:

BLAST of Spg004319 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004319 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004319 vs.


Match Name	E-value	Identity	Description

BLAST of Spg004319 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004319.1	Spg004319.1	mRNA