HG10013890 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013890
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	High mobility group B protein 2
Location	Chr02: 5738140 .. 5739402 (-)
RNA-Seq Expression	HG10013890
Synteny	HG10013890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGTGAGTTTTTTATTTTTTGATTTCTTCCGTGCTTTTTTCTGTCGTATGTGTTTATTTTATAGTTTTGATCGACCCTAGATCTAAGAAGCTTCATTGTTTTGAATTACCTGTCCAAAAGTTAGGCGTTGACCTTTTTTTCTTTTTTCTTCTGATTGATCGTTTTTGGTGATATTTTTTTTTAAAAAAATTGTAGGCTATCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCTAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGTAATTTTTTTAATCTTTACCGTTCTGAATCATTCCTGCAATTTTTCTAATCTGGATGGTTGTAGAGTTGAAAAAAATGTAAACAGGATTGAAAAACGACGAACTTGGTTTCCGTGAGTAACTAATGATATTCAAATTCACTATAATTACCTTTTAGAAATGTAAGTGAATGTTAAAACCGCTTGACTTTCTATAAAAGAGATTCCTTTGATTTGTTGTGTCTATTTGGCTTATAGACCCTTTGTTTTTGCAGTAGTTTTCTTTATGTGTAAGTCCAGTACCATCTAACTTCTTTTGTCATGTTGTTGCATTTGTTTTATTATCAAAGGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTAAGCTATTTGGCTTTGTACTAGTTGCTCTTTTAATTTTTGTCCTCATTCCAATTTTTATGATACCTTTGTGGAAATGAGCGAAGATATTGACTTACAAATGATGAAATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCGGATGCTGTACGTGATAGCTATCATTGTATTTCTTATACTTCTCCTGGTATTATAAACTCTCTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGTATATCCTCTTAGAAAAGTTTCTAAAACATTTCAATTGCAGTTCTATTTTCTTATTTGAATTGAATTCTCATTCACTGTGTGAGTTCAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGTTAGCTTCCTTAAGGAGTTTAGTTAA

mRNA sequence

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTATCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCTAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCGGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGTTAGCTTCCTTAAGGAGTTTAGTTAA

Coding sequence (CDS)

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTATCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCTAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCGGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGTTAGCTTCCTTAAGGAGTTTAGTTAA

Protein sequence

MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEVSFLKEFS

Homology

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BLAST of HG10013890 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.9e-63
Identity = 137/144 (95.14%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKS+SKKAD KL+VKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS++DAEKAPYIAKADKRK+EYEKNMKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKSMSEVNDDEDGDEGSEE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEE 144

[Close]

BLAST of HG10013890 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 5.0e-62
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKL+VKKGA  AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           +EDESEKSMSEVNDDEDGDEGSEE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEE 142

[Close]

BLAST of HG10013890 vs. NCBI nr
Match: XP_022142588.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 1.9e-61
Identity = 138/144 (95.83%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKAD KLSVKKGAA AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKSMSEVNDDEDGDEGSEE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEE 144

[Close]

BLAST of HG10013890 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61
Identity = 135/144 (93.75%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKL+VKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKS+SEVNDDE+GDEGSEE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEE 144

[Close]

BLAST of HG10013890 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61
Identity = 135/144 (93.75%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKL+VKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKS+SEVNDDE+GDEGSEE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEE 144

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BLAST of HG10013890 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-47
Identity = 108/147 (73.47%), Postives = 126/147 (85.71%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK+ESK+AD KL+V KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P NKAVSAVGKAAG KWK++SDAEKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEE 145
              +E+ESEKS+SEVND++D +EGS E
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGE 147

[Close]

BLAST of HG10013890 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 9.6e-40
Identity = 97/144 (67.36%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKLSV K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of HG10013890 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.1e-39
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KLSV K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 139

[Close]

BLAST of HG10013890 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 96/144 (66.67%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK+   K+D KL+VKK AA+   K +KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADT--KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           E++PNNK+V+ VGKA G KWK L+ AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EE+ES+KS SEVNDD++  +GS E
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGE 137

[Close]

BLAST of HG10013890 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 94/153 (61.44%), Postives = 115/153 (75.16%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 60
           MKG KSK  + KAD KL+VK   A    KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 61  NEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120
            E+NP NK+V+AVGKAAG +WKSLS+++KAPY+AKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 121 A--------EEDESEKSMSEVNDDEDGDEGSEE 145
           A        +E+ES+KS SEVN DED +EGSEE
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEE 151

[Close]

BLAST of HG10013890 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKL+VKKGA  AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           +EDESEKSMSEVNDDEDGDEGSEE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEE 142

[Close]

BLAST of HG10013890 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.3e-62
Identity = 138/144 (95.83%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKAD KLSVKKGAA AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKSMSEVNDDEDGDEGSEE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEE 144

[Close]

BLAST of HG10013890 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 135/144 (93.75%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKL+VKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKS+SEVNDDE+GDEGSEE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEE 144

[Close]

BLAST of HG10013890 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 135/144 (93.75%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKL+VKKGAANAGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           EEDESEKS+SEVNDDE+GDEGSEE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEE 144

[Close]

BLAST of HG10013890 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.6e-56
Identity = 130/144 (90.28%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS         KL+VKKGA  AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKS---------KLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           +EDESEKSMSEVNDDEDGDEGSEE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEE 133

[Close]

BLAST of HG10013890 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKLSV K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEV 146
           E++ES+KS+SEVND++D ++GSEEV
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEV 137

[Close]

BLAST of HG10013890 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 164.5 bits (415), Expect = 6.8e-41
Identity = 97/144 (67.36%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKLSV K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of HG10013890 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 161.4 bits (407), Expect = 5.8e-40
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KLSV K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 139

[Close]

BLAST of HG10013890 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 161.4 bits (407), Expect = 5.8e-40
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KLSV K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 139

[Close]

BLAST of HG10013890 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 161.4 bits (407), Expect = 5.8e-40
Identity = 95/144 (65.97%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLSVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KLSV K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEE 145
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 139

The following BLAST results are available for this feature:

BLAST of HG10013890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896795.1	5.9e-63	95.14	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_008452973.1	5.0e-62	96.53	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_022142588.1	1.9e-61	95.83	HMG1/2-like protein [Momordica charantia]	[more]
XP_022936925.1	2.5e-61	93.75	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
XP_022975791.1	2.5e-61	93.75	HMG1/2-like protein [Cucurbita maxima]	[more]

BLAST of HG10013890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	6.2e-47	73.47	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	9.6e-40	67.36	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	8.1e-39	65.97	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40619	1.1e-38	66.67	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P27347	2.7e-34	61.44	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of HG10013890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW96	2.4e-62	96.53	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1CNM1	9.3e-62	95.83	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A6J1IF57	1.2e-61	93.75	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A6J1FF34	1.2e-61	93.75	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A5A7VCD7	7.6e-56	90.28	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of HG10013890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.3	1.8e-41	67.59	high mobility group B3	[more]
AT1G20696.1	6.8e-41	67.36	high mobility group B3	[more]
AT1G20693.1	5.8e-40	65.97	high mobility group B2	[more]
AT1G20693.2	5.8e-40	65.97	high mobility group B2	[more]
AT1G20693.3	5.8e-40	65.97	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..146
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 41..107 e-value: 2.24998E-15 score: 64.5713
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 40..111 e-value: 1.6E-26 score: 104.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 41..110 e-value: 3.1E-24 score: 85.2
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 41..110 score: 20.742489
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 24..133 e-value: 1.1E-26 score: 95.0
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 28..115
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013890.1	HG10013890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin