HG10020261 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020261
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Low temperature-induced protein
Location	Chr04: 30323192 .. 30323955 (+)
RNA-Seq Expression	HG10020261
Synteny	HG10020261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCTGCCACCTTCATCGAAGTGCTTCTCGCCATCTTCATTCCTCCCGTCGGCGTCTTCCTTCGCTATGGCATTGGGGTAATCCCTTCCATTTCTTTACTTCTTTTTCTCTCGATTGGTTTTATTCTAATCATTAATTAAAGTCCTCTTTAATTCTTTGATTTTTTAGAAACTAAATTGAAGGATAAAAAGGTTTTTAAAAAGTATAAGTAATGGTTGTTTGTTGTTTAATTCTTAACCAATCTTCCAAAACAAAACTAAATTTTAAAAAACAAACTTGGTTTTGAAAATACACCTATAATATAGATAATAAAACATAAAAATTAATATACGAGAGTGGTGTTTATAAATGTAATTCTTCAAAATAAAATAAAAAATAAAAAACCTAAGGTTCCATTAGGTAAATATTTAGTTTTTTCTTTACATACTTTCCAAGTAAGTATGTGAAATTTTAGCCAATTTACTTTTTGAATTTTTTTTTAGTTTTCAAATTTAACTTTGATATATGAAAACACTCGTAAGATATAAACAATAAAGTATATAAATCAATAAAATGAAAGTGGTGACTATAAGTTTAATTTTTAAAAAATAAAAAATAAAATAATAATTATGAAAGGAACCATATAATATTAATGACAATATTAATTTTTTCCGTGAATTAAAAATTGCAGATCGAGTTTTGGATTGATTTGGTGCTCACATTTTTCGGATATCTTCCTGGAATTGTTTACGCCGTTTATGTCTTGGTTGGAACGCGATGA

mRNA sequence

ATGGGCTCTGCCACCTTCATCGAAGTGCTTCTCGCCATCTTCATTCCTCCCGTCGGCGTCTTCCTTCGCTATGGCATTGGGATCGAGTTTTGGATTGATTTGGTGCTCACATTTTTCGGATATCTTCCTGGAATTGTTTACGCCGTTTATGTCTTGGTTGGAACGCGATGA

Coding sequence (CDS)

ATGGGCTCTGCCACCTTCATCGAAGTGCTTCTCGCCATCTTCATTCCTCCCGTCGGCGTCTTCCTTCGCTATGGCATTGGGATCGAGTTTTGGATTGATTTGGTGCTCACATTTTTCGGATATCTTCCTGGAATTGTTTACGCCGTTTATGTCTTGGTTGGAACGCGATGA

Protein sequence

MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR

Homology

[Close]

BLAST of HG10020261 vs. NCBI nr
Match: XP_004137807.1 (low temperature-induced protein lt101.2 [Cucumis sativus] >KGN58938.1 hypothetical protein Csa_001360 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGY+PGI+YAVYVL+GTR
Sbjct: 14 MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAVYVLIGTR 69

[Close]

BLAST of HG10020261 vs. NCBI nr
Match: XP_008442650.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATF+EVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGY+PGIVYAVYVL+GTR
Sbjct: 14 MGSATFVEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIVYAVYVLIGTR 69

[Close]

BLAST of HG10020261 vs. NCBI nr
Match: XP_038906189.1 (low temperature-induced protein lt101.2-like [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 6.7e-20
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATFIEVLLAIFIPP+GVFLRYGIGIEFWIDLVLT FGYLPGI+YAVYVLVGTR
Sbjct: 25 MGSATFIEVLLAIFIPPLGVFLRYGIGIEFWIDLVLTLFGYLPGIIYAVYVLVGTR 80

[Close]

BLAST of HG10020261 vs. NCBI nr
Match: XP_022945600.1 (low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.1 low temperature-induced protein lt101.2-like [Cucurbita maxima] >XP_023540674.1 low temperature-induced protein lt101.2-like [Cucurbita pepo subsp. pepo] >KAG7027999.1 Low temperature-induced protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 3.7e-18
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVG 55
          MGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GYLPGI+YAVYVLVG
Sbjct: 10 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 63

[Close]

BLAST of HG10020261 vs. NCBI nr
Match: XP_022145681.1 (low temperature-induced protein lt101.2-like [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATF+EVLLA+FIPP+GVFLRYGIGIEFWI L+LTF GYLPGIVYAVYVLVG R
Sbjct: 10 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIALLLTFLGYLPGIVYAVYVLVGMR 65

[Close]

BLAST of HG10020261 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.9e-16
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLV 54
          M SATFIEV+LAI +PPVGVFLRYG+ +EFWI L+LT  GY+PGI+YAVYVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of HG10020261 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-15
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLV 54
          MGSAT +EV+LAI +PPVGVFLRY +G+EFWI L+LT  GY+PGI+YAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of HG10020261 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-15
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLV 54
          MGSAT +EV+LAI +PPVGVFLRY +G+EFWI L+LT  GY+PGI+YAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of HG10020261 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-14
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVL 53
          M +ATF+++++AI +PP+GVFLR+G G+EFWI LVLT  GY+PGI+YA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of HG10020261 vs. ExPASy Swiss-Prot
Match: Q9FE70 (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana OX=3702 GN=At1g57550 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-13
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVL 53
          MGS  F+EVL AIFIPPVGVFLRYG+G+EFW+ L+LT F ++PG++YA+YVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of HG10020261 vs. ExPASy TrEMBL
Match: A0A0A0LAU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGY+PGI+YAVYVL+GTR
Sbjct: 14 MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAVYVLIGTR 69

[Close]

BLAST of HG10020261 vs. ExPASy TrEMBL
Match: A0A1S3B667 (low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC103486456 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATF+EVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGY+PGIVYAVYVL+GTR
Sbjct: 14 MGSATFVEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIVYAVYVLIGTR 69

[Close]

BLAST of HG10020261 vs. ExPASy TrEMBL
Match: A0A6J1KU26 (low temperature-induced protein lt101.2-like OS=Cucurbita maxima OX=3661 GN=LOC111498668 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVG 55
          MGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GYLPGI+YAVYVLVG
Sbjct: 10 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 63

[Close]

BLAST of HG10020261 vs. ExPASy TrEMBL
Match: A0A6J1G1E1 (low temperature-induced protein lt101.2-like OS=Cucurbita moschata OX=3662 GN=LOC111449786 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVG 55
          MGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GYLPGI+YAVYVLVG
Sbjct: 10 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 63

[Close]

BLAST of HG10020261 vs. ExPASy TrEMBL
Match: A0A6J1CX15 (low temperature-induced protein lt101.2-like OS=Momordica charantia OX=3673 GN=LOC111015073 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-18
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVGTR 57
          MGSATF+EVLLA+FIPP+GVFLRYGIGIEFWI L+LTF GYLPGIVYAVYVLVG R
Sbjct: 10 MGSATFLEVLLAVFIPPLGVFLRYGIGIEFWIALLLTFLGYLPGIVYAVYVLVGMR 65

[Close]

BLAST of HG10020261 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 86.3 bits (212), Expect = 8.7e-18
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVLVG 55
          MGS TF+E++LAI +PPVGVFLRYG G+EFWI L+LT  GY+PGI+YA+YVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of HG10020261 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-15
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVL 53
          M +ATF+++++AI +PP+GVFLR+G G+EFWI LVLT  GY+PGI+YA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of HG10020261 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-14
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVL 53
          MGS  F+EVL AIFIPPVGVFLRYG+G+EFW+ L+LT F ++PG++YA+YVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of HG10020261 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-14
Identity = 32/52 (61.54%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYLPGIVYAVYVL 53
          M +ATF+E++LAI +PP+GVFL++G  +EFWI L+LT FGYLPGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of HG10020261 vs. TAIR 10
Match: AT2G24040.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 52.4 bits (124), Expect = 1.4e-07
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 8  EVLLAIFIPPVGVFLRYG-IGIEFWIDLVLTFFGYLPGIVYAVYVL 53
          E+ +AI +PPVGV LR+G   +EF+I L+LT  GYLPGI+YA+Y +
Sbjct: 10 EIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55

The following BLAST results are available for this feature:

BLAST of HG10020261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137807.1	1.3e-20	94.64	low temperature-induced protein lt101.2 [Cucumis sativus] >KGN58938.1 hypothetic...	[more]
XP_008442650.1	1.3e-20	94.64	PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo]	[more]
XP_038906189.1	6.7e-20	94.64	low temperature-induced protein lt101.2-like [Benincasa hispida]	[more]
XP_022945600.1	3.7e-18	88.89	low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767....	[more]
XP_022145681.1	1.1e-17	87.50	low temperature-induced protein lt101.2-like [Momordica charantia]	[more]

BLAST of HG10020261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ARD5	7.9e-16	75.47	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	3.0e-15	73.58	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	3.0e-15	73.58	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]
Q9ZNQ7	4.4e-14	63.46	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9FE70	1.7e-13	69.23	UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana OX=3702 GN=At1g57550 ...	[more]

BLAST of HG10020261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAU7	6.5e-21	94.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=3 SV=1	[more]
A0A1S3B667	6.5e-21	94.64	low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1KU26	1.8e-18	88.89	low temperature-induced protein lt101.2-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G1E1	1.8e-18	88.89	low temperature-induced protein lt101.2-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1CX15	5.2e-18	87.50	low temperature-induced protein lt101.2-like OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of HG10020261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	8.7e-18	72.22	Low temperature and salt responsive protein family	[more]
AT3G05880.1	3.1e-15	63.46	Low temperature and salt responsive protein family	[more]
AT1G57550.1	1.2e-14	69.23	Low temperature and salt responsive protein family	[more]
AT3G05890.1	1.5e-14	61.54	Low temperature and salt responsive protein family	[more]
AT2G24040.1	1.4e-07	56.52	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 6..53 e-value: 9.2E-19 score: 67.4
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..53
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 10..25
None	No IPR available	PANTHER	PTHR21659:SF65	OS03G0286900 PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020261.1	HG10020261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane