HG10020542 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020542
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RRM domain-containing protein
Location	Chr05: 430933 .. 432565 (+)
RNA-Seq Expression	HG10020542
Synteny	HG10020542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACTCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACGTCAGTGGTTGATTTTCTCTCTTAATTGTGTATTTAGGCGTAATTTTGCTAACTATGTCTGTGGAGACAATTTGGATTTATTGAATGATTCCAACTTCACGCGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGGTCGTCGACTAGTTCTCGTGTATTCTGAACGTCTAATTTTGTCACAATAGTTGATGCTTGGCGCTAACTGTTATCACTTTTTATAAATTTCAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGTAATTTAAACGCTCTACCTTTGCAATCGATGCTCTGTCTATTATTTTCCAAATGAGTGTAGTTTTCATAATGCATATTGTTTTCTTATGTGTTATATATTATATTATCCTCTTAATCGCCAAAATCCACTTAACATGCTATTTTCTTATTCACTGTGATTTTGTAATGCATATGACTCGCTGTCTAGAAGTATATCTCATTTAGTCATCATCTCTAGCTGAAGACAGTAGATCCATCTATTAGAACCCTAAATAACTAATCCAGAAATTACGAAATTTAATTCCATTAACTGCCATCTTGAGCAAGCCTTTCAGTATTTATGATATAAAATCATAGAAATCAGAATCCTCCAGTTTAGGCATTACACAAAGCAGCAAGAAACCTTGAAATCCTCTATAAATTAGTTAGAGAATAGATATCTTATCTAGATAGGAGAAGTTGGAATTAATAGATTTAAGGTAGCATGAAGAGGATATAAGGTAGCGTTCATCCAGTTATTCTTAATCTTGCTGTCTTTCCCAGCTGTGGAACATTAAAACTGTTATACCTTCAAACGAAAAAATGAACTGCGTCAGTGGATAGTTAATAGTTGAATGCTGATCTAAGCATTTGCTATTATGATAACTTTGTTTTATTACATTGGTGAACGTGTATATATCAGCAGGTAGATTAACATTGTTAGGAGGAACAAAGGCAATTAATTGAACCTGCCCTCTACATTCAAAACCTTGGATGGAACTCACCAGAGATTTGTACATGATCTTATAATATTAAAGAGGCATCGTCTCTTCCCCTGTCTCCTGAGCCAAGTAAAACTTACCAGCAGGCAGTAACTCCACCTGAAAGATCTCCTTCACGGCTTGGACAAGATTTGGATCTTGTCCTTGTCTTCTATGTGGTATGCAAGAAACTAAGCCAATCCCTTTTGGAGCTACCTCTAAATCCAAATCCAATGACAATGAGAATCCCATTTCATTTTGAATAG

mRNA sequence

ATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACTCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGCAGTAACTCCACCTGAAAGATCTCCTTCACGGCTTGGACAAGATTTGGATCTTGTCCTTGTCTTCTATGTGGTATGCAAGAAACTAAGCCAATCCCTTTTGGAGCTACCTCTAAATCCAAATCCAATGACAATGAGAATCCCATTTCATTTTGAATAG

Coding sequence (CDS)

ATGACCGTCGGATTGCACTTCACAGTCACAGCAGCTCCAAAACCGTTCTTTCAGTTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGCATTCAAAGCATTCAATCCCAATTGGCTTACGGTTCTACGCCACGCCCCTTCTTCTCTGTGAGGAAGACTCACTCAATTTCAGACTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCGCCTTCTCCCAGAAGATACACGCCTTCAACTAGGCTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGGAATGCTTTCAAAAGCTTTGGCCAACTTGAAGAAGTCAATTTGGTGATGGATAAAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTACTGAAGAAGAATCTCAAAAAGCTATCGAGGGAATGCACGGCAAGGCAGTAACTCCACCTGAAAGATCTCCTTCACGGCTTGGACAAGATTTGGATCTTGTCCTTGTCTTCTATGTGGTATGCAAGAAACTAAGCCAATCCCTTTTGGAGCTACCTCTAAATCCAAATCCAATGACAATGAGAATCCCATTTCATTTTGAATAG

Protein sequence

MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPPERSPSRLGQDLDLVLVFYVVCKKLSQSLLELPLNPNPMTMRIPFHFE

Homology

[Close]

BLAST of HG10020542 vs. NCBI nr
Match: XP_038895074.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 139/153 (90.85%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTV AAPKPFFQFQ THHNNIRSTETH RI SI+SQLAY STP PFFSVRKTHS
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           ISDSPLFS+AC SSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAV 154
           DKVANRPRGFAFLRYATEEESQKAIEGMHGK++
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKSI 153

[Close]

BLAST of HG10020542 vs. NCBI nr
Match: XP_038895073.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 3.0e-70
Identity = 142/163 (87.12%), Postives = 144/163 (88.34%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTV AAPKPFFQFQ THHNNIRSTETH RI SI+SQLAY STP PFFSVRKTHS
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           ISDSPLFS+AC SSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPPERSPSRL 164
           DKVANRPRGFAFLRYATEEESQKAIEGMHGK       SP  L
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKVYLMDILSPPLL 163

[Close]

BLAST of HG10020542 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 274.6 bits (701), Expect = 6.7e-70
Identity = 139/151 (92.05%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTV AAPKPFFQFQ THHNNIRSTETH RI SI+SQLAY STP PFFSVRKTHS
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           ISDSPLFS+AC SSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 152
           DKVANRPRGFAFLRYATEEESQKAIEGMHGK
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 151

[Close]

BLAST of HG10020542 vs. NCBI nr
Match: KAA0036062.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 3.1e-67
Identity = 136/156 (87.18%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFFQ QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           IS+SPLFSVACVSS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPP 157
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKA+  P
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKALPSP 154

[Close]

BLAST of HG10020542 vs. NCBI nr
Match: TYJ98869.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-66
Identity = 135/156 (86.54%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFF  QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           IS+SPLFSVACVSS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPP 157
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKA+  P
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKALPSP 154

[Close]

BLAST of HG10020542 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-24
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 54  SVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           S R+   I    + S     SS SP      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 EEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGK 152
             +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of HG10020542 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 73  SSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAF 132
           + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 133 LRYATEEESQKAIEGMHGK 152
           +RYAT E+S K I GM GK
Sbjct: 102 VRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of HG10020542 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-13
Identity = 32/66 (48.48%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 88  RLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 147
           +L+++GLSF T+E++LR AF+ FG+L EV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 148 MHGKAV 154
           M+GK +
Sbjct: 343 MNGKII 348

[Close]

BLAST of HG10020542 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-12
Identity = 31/66 (46.97%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 88  RLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 147
           RL+V+GLSF T+E++LR AF+ FG+L EV ++MD+++ R +G+AF+ Y TEE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 148 MHGKAV 154
           M+G+ +
Sbjct: 360 MNGQII 365

[Close]

BLAST of HG10020542 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-12
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 73  SSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAF 132
           S   S + +    + RL+V+GLSF T+E++LR AF+ FG+L EV ++MDK++ R +G+AF
Sbjct: 281 SFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAF 340

Query: 133 LRYATEEESQKAIEGMHGKAV 154
           + Y TEE    A++ M+G+ +
Sbjct: 341 IEYTTEEAGGAALKAMNGQII 361

[Close]

BLAST of HG10020542 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.5e-67
Identity = 136/156 (87.18%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFFQ QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           IS+SPLFSVACVSS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPP 157
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKA+  P
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKALPSP 154

[Close]

BLAST of HG10020542 vs. ExPASy TrEMBL
Match: A0A5D3BIP7 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00650 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.8e-67
Identity = 135/156 (86.54%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFF  QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           IS+SPLFSVACVSS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPP 157
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKA+  P
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKALPSP 154

[Close]

BLAST of HG10020542 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.9e-66
Identity = 136/163 (83.44%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFF  QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           IS+SPLFSVACVSS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPPERSPSRL 164
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGK  +    SP  L
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKVYSMDIPSPPLL 161

[Close]

BLAST of HG10020542 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 133/151 (88.08%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFF  QTTHHNNIRSTETHMR QS QS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVM 120
           IS+SPLFSVACVSS  SPSPRRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQL EVNLVM
Sbjct: 61  ISESPLFSVACVSS--SPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGK 152
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGK
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of HG10020542 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-63
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MTVGLHFTVTAAPKPFFQFQTTHHNNIRSTETHMRIQSIQSQLAYGSTPRPFFSVRKTHS 60
           MT GL FTVTAAPKPFFQ QTTHH++I STET MRI+SIQS+LAY STP PFFS RKT S
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSPLFSVACVSSSP--SPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNL 120
           ISDS LFSVACVSSSP  S SPRRYTPSTRLY+SGLSFRTTEESLRNAFKSFGQL EVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGK 152
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of HG10020542 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-25
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 54  SVRKTHSISDSPLFSVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           S R+   I    + S     SS SP      P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 EEVNLVMDKVANRPRGFAFLRYATEEESQKAIEGMHGK 152
             +N+VMDKVANRP+GFAFLRY TEEE+ KAI+GMHGK
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of HG10020542 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 73  SSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAF 132
           + S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 133 LRYATEEESQKAIEGMHGK 152
           +RYAT E+S K I GM GK
Sbjct: 102 VRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of HG10020542 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-14
Identity = 32/66 (48.48%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 88  RLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAFLRYATEEESQKAIEG 147
           +L+++GLSF T+E++LR AF+ FG+L EV ++MDK++ R +G+AFL Y TEE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 148 MHGKAV 154
           M+GK +
Sbjct: 343 MNGKII 348

[Close]

BLAST of HG10020542 vs. TAIR 10
Match: AT2G27330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-12
Identity = 36/108 (33.33%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 81  RRYTP-------STRLYVSGLSFRTTEESLRNAFKSFGQLEEVNLVMDKVANRPRGFAFL 140
           R +TP       S+ L+V G+SF +TEE+L  AF  +GQ+ +V+++MDK+  RP+GFA++
Sbjct: 8   RSFTPLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67

Query: 141 RYATEEESQKAIEGMHGKAV---------------TPPERSPSRLGQD 167
            ++++EE++KA+  ++ + V                PP+  P+  G D
Sbjct: 68  TFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPPDTKPNHAGGD 115

[Close]

BLAST of HG10020542 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-12
Identity = 49/129 (37.98%), Postives = 71/129 (55.04%), Query Frame = 0


Query: 59  HSISDSPLF-SVACVSSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLEEVN 118
           HSIS S  F    C SSS S       PS++L++ GLS+   E+SL++AF SFG++ EV 
Sbjct: 19  HSISSSFHFLPQFCTSSSAS-------PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVR 78

Query: 119 LVMDKVANRPRGFAFLRYATEEESQKAIEGMHGKAVTPPERSPSRLGQDLDLVLVFYVVC 178
           +  DK + R RGF F+ +A E ++  A + M GK +      P R+   L+ V    VV 
Sbjct: 79  IAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLL---GRPLRISFALERVRGGPVVV 137

Query: 179 KKLSQSLLE 187
            +L +S  E
Sbjct: 139 PRLGKSKRE 137

The following BLAST results are available for this feature:

BLAST of HG10020542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895074.1	1.8e-70	90.85	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa h...	[more]
XP_038895073.1	3.0e-70	87.12	organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Benincasa h...	[more]
XP_038895072.1	6.7e-70	92.05	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
KAA0036062.1	3.1e-67	87.18	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]	[more]
TYJ98869.1	2.0e-66	86.54	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]	[more]

BLAST of HG10020542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	7.5e-24	58.16	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	1.6e-13	49.37	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q8L440	6.0e-13	48.48	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
C0HFE5	3.0e-12	46.97	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q6YWP9	3.9e-12	41.98	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of HG10020542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXY0	1.5e-67	87.18	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3BIP7	9.8e-67	86.54	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E0R2	4.9e-66	83.44	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]
A0A1S3AYF6	1.8e-65	88.08	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	1.7e-63	85.62	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]

BLAST of HG10020542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	5.4e-25	58.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.1e-14	49.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	4.3e-14	48.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G27330.1	1.8e-12	33.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G08000.1	1.8e-12	37.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..164 e-value: 3.0E-17 score: 73.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..152 e-value: 9.4E-17 score: 60.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..169 score: 16.738909
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 56..160 e-value: 4.8E-24 score: 87.1
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 9..152
None	No IPR available	PANTHER	PTHR48029:SF4	ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 9..152
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 72..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10020542.1	HG10020542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding