HG10019480 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10019480
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr04: 22264686 .. 22266017 (-)
RNA-Seq Expression	HG10019480
Synteny	HG10019480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTCCAACTAAAGCTTCTGCACTTCAGACTTTCGAAAAGTATATTGCATCCCCTGTTTTACCGGCGACAAAGAAAAAACACTCATATCTACTAAAACCTTTTCCAAGACATTTTGTAAGGAAGATGACCTCCTTCATTAATTCTTGGTCTGCACTCACGAATCCTGATTTGCTGGAAGATTGTTGCGTTCGAGCCCAATTGCCGGAAGCTTCCTCCAAACGGCCTGTTAAATCTACTCAACAGTTTCATCAGTCGGTCTTTAAAATTCCAAGGTTCAATGTGCAATTTGTTAGAGGTGTTCCATGTGACAATTCAAATTCTCCCCTCTCTAGACAGCATGGCTTCGATTGCGAATCAATAGTGAGCATTAGTAGTGAAGACATTGATTGCTATGAGACAGAGGTAGATAAGGAAGAAGCAGAATTTGTGGACAACTTTGGCAAAGAATGCGATTTATTTCAGGAAGAAATCAACGCAGGAATTGGTAAAGATGGAACTAAAGAAGTACACCTCAATGAGGATGTAATTGAAGATGTTGCAGCACTTTTCCAAAATTCGGCCAAGAAAAGCTCAAATCAAAAGACTTGCTCTCTGCAATTTCAACTATCTCCTTCCCAAATCTCTTCTAAATTTTCCTCCTTGATTGAAGATTGTGGTTTGATTTTTGAGTAAGTTTTTTTTATTGTCATAAGGCTTCCCGTAAGTTGGTTGGTGCTCTCCTCCTCTCGTGATTGTCCATTGTTTTGGCTGGAGTTGTAAGGTTGTATCAGGATTTTGGCTGGCTCAGTCCTTGGAGAGGTCCTTATGTCAGCAGCTTATATGTCATTCTAATTAGGGGATCAGCTTCAAGCATCTTACGCTCTCAAAGTTCTTTGTCATTCAAGCTTCAAACCTCATTCTAATTGGGTGTTTTGTATCTTATTTTAGCTTCTTATGCCTCTTATGATTAGTGTCTTATATTGTTCTGCAATCTACCCATTGTACTTTTTTTCTGTATTTGCTTATTTGTACTAAGAGCTTTTGGCTCATTTCATTATATCAACAAAATAGTATTGTTTTCGTTTAAAAAAAAAAACCTTTGTAACTACCAAAAATTTTTGCTTGTTTATTGTCTTCACAACACATAATGGCCTTGTTGGGTTGGAAGGGAGCCAAGGAGCAATATGCAGAAACATCAACTTTGAGGGCTCTAATGATTTTGTACCGCTCATCATGGAAGTTCTTCCGTCTAATCACAATAATGTTGCTGGTAGAGAAAGGAACCAAGGCAGTTGTGGGCTCTGCGATTGTTTGGCTCTCATTGATGTTGGGTGGTTGATCAATTAA

mRNA sequence

ATGAAATCTCCAACTAAAGCTTCTGCACTTCAGACTTTCGAAAAGTATATTGCATCCCCTGTTTTACCGGCGACAAAGAAAAAACACTCATATCTACTAAAACCTTTTCCAAGACATTTTGTAAGGAAGATGACCTCCTTCATTAATTCTTGGTCTGCACTCACGAATCCTGATTTGCTGGAAGATTGTTGCGTTCGAGCCCAATTGCCGGAAGCTTCCTCCAAACGGCCTGTTAAATCTACTCAACAGTTTCATCAGTCGGTCTTTAAAATTCCAAGGTTCAATGTGCAATTTGTTAGAGGTGTTCCATGTGACAATTCAAATTCTCCCCTCTCTAGACAGCATGGCTTCGATTGCGAATCAATAGTGAGCATTAGTAGTGAAGACATTGATTGCTATGAGACAGAGGTAGATAAGGAAGAAGCAGAATTTGTGGACAACTTTGGCAAAGAATGCGATTTATTTCAGGAAGAAATCAACGCAGGAATTGGGAGCCAAGGAGCAATATGCAGAAACATCAACTTTGAGGGCTCTAATGATTTTGTACCGCTCATCATGGAAGTTCTTCCGTCTAATCACAATAATGTTGCTGGTAGAGAAAGGAACCAAGGCAGTTGTGGGCTCTGCGATTGTTTGGCTCTCATTGATGTTGGGTGGTTGATCAATTAA

Coding sequence (CDS)

ATGAAATCTCCAACTAAAGCTTCTGCACTTCAGACTTTCGAAAAGTATATTGCATCCCCTGTTTTACCGGCGACAAAGAAAAAACACTCATATCTACTAAAACCTTTTCCAAGACATTTTGTAAGGAAGATGACCTCCTTCATTAATTCTTGGTCTGCACTCACGAATCCTGATTTGCTGGAAGATTGTTGCGTTCGAGCCCAATTGCCGGAAGCTTCCTCCAAACGGCCTGTTAAATCTACTCAACAGTTTCATCAGTCGGTCTTTAAAATTCCAAGGTTCAATGTGCAATTTGTTAGAGGTGTTCCATGTGACAATTCAAATTCTCCCCTCTCTAGACAGCATGGCTTCGATTGCGAATCAATAGTGAGCATTAGTAGTGAAGACATTGATTGCTATGAGACAGAGGTAGATAAGGAAGAAGCAGAATTTGTGGACAACTTTGGCAAAGAATGCGATTTATTTCAGGAAGAAATCAACGCAGGAATTGGGAGCCAAGGAGCAATATGCAGAAACATCAACTTTGAGGGCTCTAATGATTTTGTACCGCTCATCATGGAAGTTCTTCCGTCTAATCACAATAATGTTGCTGGTAGAGAAAGGAACCAAGGCAGTTGTGGGCTCTGCGATTGTTTGGCTCTCATTGATGTTGGGTGGTTGATCAATTAA

Protein sequence

MKSPTKASALQTFEKYIASPVLPATKKKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKRPVKSTQQFHQSVFKIPRFNVQFVRGVPCDNSNSPLSRQHGFDCESIVSISSEDIDCYETEVDKEEAEFVDNFGKECDLFQEEINAGIGSQGAICRNINFEGSNDFVPLIMEVLPSNHNNVAGRERNQGSCGLCDCLALIDVGWLIN

Homology

[Close]

BLAST of HG10019480 vs. NCBI nr
Match: XP_038887514.1 (RNA-binding protein 39-like isoform X1 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 27  KKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKRPVK 80
           KKHS LLKPFP HF+RK TSF NSW+ L N DLLE+CCV+ Q+P+    R V+
Sbjct: 294 KKHSRLLKPFPEHFIRKKTSFFNSWTTLANSDLLEECCVKVQIPDFFPNRYVE 346

[Close]

BLAST of HG10019480 vs. NCBI nr
Match: KAA0057401.1 (hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK30100.1 hypothetical protein E5676_scaffold216G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-09
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0


Query: 14  EKYIASPVLPATKKKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEAS 73
           +K + S  +P   K++  L KPF + F RK TSF NSW+ +TNPDLLE+ CV+ Q+P   
Sbjct: 176 DKKLKSSKVP---KRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIV 235

Query: 74  SKRPV---KSTQQFHQSVFKIPRFNVQFVRG--VPCDNSNSPLSRQHGFDCESIVSISSE 133
             + V    S    + S       +V  VRG  +P D+             ES+VS+SSE
Sbjct: 236 QNKSVISSSSLNHINHSSGSSQAHHVSLVRGTRIPLDSEE-----------ESVVSVSSE 295

Query: 134 DIDCYETEVDKEEAEFVDNFGKECD-LFQEE 159
           D++  E +  K   EF ++  K    LFQ E
Sbjct: 296 DLERDEDDEIKTSEEFHEDMNKALGLLFQPE 312

[Close]

BLAST of HG10019480 vs. NCBI nr
Match: XP_038876689.1 (uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida] >XP_038876690.1 uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-08
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 28  KHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKR-------PVKS 87
           + S+LLKPFP++F R+ +S + +WS L N +LLEDCC R Q+P   ++R       P  +
Sbjct: 172 RSSHLLKPFPKYFERRKSSIVKTWSLLANSNLLEDCCARVQIPIDKAERSVIPPNFPSST 231

Query: 88  TQQFHQSVFKIPRFNVQFVRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
           T Q  +++      +  +V+G P     S    Q  +D  SI S+SSED+D
Sbjct: 232 TPQLGKNL----DLSFIYVQGSPISVFGSKKLPQE-YDEASIASVSSEDLD 277

[Close]

BLAST of HG10019480 vs. NCBI nr
Match: KAA0062445.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 42  RKMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQ 101
           +K TSF NSW+  TNPDLLE CCV+ Q+P     +S+  P  +    H        FN  
Sbjct: 100 KKRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPS 159

Query: 102 FVRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
            V+G+ C    +       F+ ES+ S+SSE+++
Sbjct: 160 SVQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 193

[Close]

BLAST of HG10019480 vs. NCBI nr
Match: TYK27438.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-06
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 43  KMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQF 102
           K TSF NSW+  TNPDLLE CCV+ Q+P     +S+  P  +    H        FN   
Sbjct: 126 KRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPSS 185

Query: 103 VRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
           V+G+ C    +       F+ ES+ S+SSE+++
Sbjct: 186 VQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 218

[Close]

BLAST of HG10019480 vs. ExPASy TrEMBL
Match: A0A5A7UV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00800 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 0


Query: 14  EKYIASPVLPATKKKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEAS 73
           +K + S  +P   K++  L KPF + F RK TSF NSW+ +TNPDLLE+ CV+ Q+P   
Sbjct: 176 DKKLKSSKVP---KRNYPLFKPFRKQFSRKRTSFNNSWTKITNPDLLEEGCVKLQVPGIV 235

Query: 74  SKRPV---KSTQQFHQSVFKIPRFNVQFVRG--VPCDNSNSPLSRQHGFDCESIVSISSE 133
             + V    S    + S       +V  VRG  +P D+             ES+VS+SSE
Sbjct: 236 QNKSVISSSSLNHINHSSGSSQAHHVSLVRGTRIPLDSEE-----------ESVVSVSSE 295

Query: 134 DIDCYETEVDKEEAEFVDNFGKECD-LFQEE 159
           D++  E +  K   EF ++  K    LFQ E
Sbjct: 296 DLERDEDDEIKTSEEFHEDMNKALGLLFQPE 312

[Close]

BLAST of HG10019480 vs. ExPASy TrEMBL
Match: A0A5A7V992 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00230 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 42  RKMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQ 101
           +K TSF NSW+  TNPDLLE CCV+ Q+P     +S+  P  +    H        FN  
Sbjct: 100 KKRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPS 159

Query: 102 FVRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
            V+G+ C    +       F+ ES+ S+SSE+++
Sbjct: 160 SVQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 193

[Close]

BLAST of HG10019480 vs. ExPASy TrEMBL
Match: A0A5D3DVC2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001350 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 43  KMTSFINSWSALTNPDLLEDCCVRAQLP----EASSKRPVKSTQQFHQSVFKIPRFNVQF 102
           K TSF NSW+  TNPDLLE CCV+ Q+P     +S+  P  +    H        FN   
Sbjct: 126 KRTSFNNSWTKFTNPDLLEACCVKIQVPGLNQNSSASLPFLNKPCSHSGCNSQESFNPSS 185

Query: 103 VRGVPCDNSNSPLSRQHGFDCESIVSISSEDID 132
           V+G+ C    +       F+ ES+ S+SSE+++
Sbjct: 186 VQGLHCTFQTTSHKGSKDFNEESLASLSSEELE 218

[Close]

BLAST of HG10019480 vs. ExPASy TrEMBL
Match: A0A0A0KHK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 27  KKHSYLLKPFPRHFVRKMTSFINSWSALTNPDLLEDCCVRAQLPEASSKR 77
           ++ S L K F +HF RK TSF NSW+ +TNPD+LE  CV+ Q+P     R
Sbjct: 127 QRSSNLFKSFHKHFARKKTSFYNSWTKITNPDVLEASCVKIQVPGLEQNR 176

The following BLAST results are available for this feature:

BLAST of HG10019480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887514.1	2.2e-10	62.26	RNA-binding protein 39-like isoform X1 [Benincasa hispida]	[more]
KAA0057401.1	2.5e-09	35.76	hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK301...	[more]
XP_038876689.1	1.6e-08	36.94	uncharacterized protein LOC120069082 isoform X1 [Benincasa hispida] >XP_03887669...	[more]
KAA0062445.1	3.4e-06	36.17	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK27438.1	5.7e-06	36.56	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of HG10019480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10019480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV76	1.2e-09	35.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V992	1.6e-06	36.17	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DVC2	2.8e-06	36.56	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KHK4	6.8e-05	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G408260 PE=4 SV=1	[more]

BLAST of HG10019480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10019480.1	HG10019480.1	mRNA