HG10005369.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005369.1
TypemRNA
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr07: 1888408 .. 1888974 (+)
Sequence length567
RNA-Seq ExpressionHG10005369.1
SyntenyHG10005369.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAATAAGTACAATATCAAACCGGGATCAGATCATTACTTATGCTTGGTGGTTCTTCTTGGCAGAGCAGGCCTACTGAATGAAGCATATGAACTGGTAAAGCGTGTGGAAGTGGAACCATCTGCTGATATATGGGCCACACTCCTTTCTTCTTGCAGGCTTCATCAAAATGTTGAGTTGGTAGAAATTTGTGCTCAAAATATTTTCAGAACAAATCCATCAAGGGTTAGTAGCTACACTTGTCTTTCCAATATCTATGCTACTATGAAACAATGGACTGCTGTGGAAAAGGTGAGAGCTACAGTGAGAAAACGTGGATTGAAAAAACCAGCGGGCTATAGTTTAATTGAGCTTGATAGCCAGGTTCATATGTTCTTTGTTGGAGACAAGTCACACCAACAGACAAAAGATATATATGCCAAACTGAAGGATATAAGTACGCGATTCAAGGAGGAAGGGTACAAGCCCGATACCAGTCCAGTGTTATATGATGTAAATGAAGAACAAAAGAGAAGATGCTTTGGGACAATAGTGAGCGATTGGCAATTGCTTTTGCTCTTCTAA

mRNA sequence

ATGACCAATAAGTACAATATCAAACCGGGATCAGATCATTACTTATGCTTGGTGGTTCTTCTTGGCAGAGCAGGCCTACTGAATGAAGCATATGAACTGGTAAAGCGTGTGGAAGTGGAACCATCTGCTGATATATGGGCCACACTCCTTTCTTCTTGCAGGCTTCATCAAAATGTTGAGTTGGTAGAAATTTGTGCTCAAAATATTTTCAGAACAAATCCATCAAGGGTTAGTAGCTACACTTGTCTTTCCAATATCTATGCTACTATGAAACAATGGACTGCTGTGGAAAAGGTGAGAGCTACAGTGAGAAAACGTGGATTGAAAAAACCAGCGGGCTATAGTTTAATTGAGCTTGATAGCCAGGTTCATATGTTCTTTGTTGGAGACAAGTCACACCAACAGACAAAAGATATATATGCCAAACTGAAGGATATAAGTACGCGATTCAAGGAGGAAGGGTACAAGCCCGATACCAGTCCAGTGTTATATGATGTAAATGAAGAACAAAAGAGAAGATGCTTTGGGACAATAGTGAGCGATTGGCAATTGCTTTTGCTCTTCTAA

Coding sequence (CDS)

ATGACCAATAAGTACAATATCAAACCGGGATCAGATCATTACTTATGCTTGGTGGTTCTTCTTGGCAGAGCAGGCCTACTGAATGAAGCATATGAACTGGTAAAGCGTGTGGAAGTGGAACCATCTGCTGATATATGGGCCACACTCCTTTCTTCTTGCAGGCTTCATCAAAATGTTGAGTTGGTAGAAATTTGTGCTCAAAATATTTTCAGAACAAATCCATCAAGGGTTAGTAGCTACACTTGTCTTTCCAATATCTATGCTACTATGAAACAATGGACTGCTGTGGAAAAGGTGAGAGCTACAGTGAGAAAACGTGGATTGAAAAAACCAGCGGGCTATAGTTTAATTGAGCTTGATAGCCAGGTTCATATGTTCTTTGTTGGAGACAAGTCACACCAACAGACAAAAGATATATATGCCAAACTGAAGGATATAAGTACGCGATTCAAGGAGGAAGGGTACAAGCCCGATACCAGTCCAGTGTTATATGATGTAAATGAAGAACAAAAGAGAAGATGCTTTGGGACAATAGTGAGCGATTGGCAATTGCTTTTGCTCTTCTAA

Protein sequence

MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVELVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELDSQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRRCFGTIVSDWQLLLLF
Homology
BLAST of HG10005369.1 vs. NCBI nr
Match: XP_038887372.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 9.9e-84
Identity = 155/173 (89.60%), Postives = 164/173 (94.80%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MTNKYNIKPGS H+LCLV LLGRAGLLNEAYELVKR+EVEPSADIWATLLS+CRLH+NVE
Sbjct: 476 MTNKYNIKPGSAHFLCLVDLLGRAGLLNEAYELVKRIEVEPSADIWATLLSACRLHRNVE 535

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNPS+VSSY CLSNIYA MKQWTAVEKVRAT+RKRGLKKPAGYSLIELD
Sbjct: 536 LAEISAQNIFRTNPSKVSSYICLSNIYAAMKQWTAVEKVRATMRKRGLKKPAGYSLIELD 595

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQ+HMFFVGDKSHQ+TKDIYAKLKDIS R KEEGYKPDTSPVLYDVNEEQK +
Sbjct: 596 SQIHMFFVGDKSHQETKDIYAKLKDISWRLKEEGYKPDTSPVLYDVNEEQKEK 648

BLAST of HG10005369.1 vs. NCBI nr
Match: KAG6572313.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011924.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 5.2e-77
Identity = 146/173 (84.39%), Postives = 157/173 (90.75%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT KY+IKPG  HYLCLV LLGRAGLLNEAYELVKR+EVEPSADIWA LLS+CRLH+NV 
Sbjct: 475 MTIKYDIKPGPAHYLCLVDLLGRAGLLNEAYELVKRMEVEPSADIWAALLSACRLHRNVV 534

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA MKQWTAVEKVR+T+R  GLKKPAGYSLIELD
Sbjct: 535 LAEISAQNIFRTNPTRVSSYICLSNIYAAMKQWTAVEKVRSTMRNYGLKKPAGYSLIELD 594

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGDKSHQQTKDIYAKLKDIS R KE+G+KPDTS +LYDVNEEQK +
Sbjct: 595 SQVHMFFVGDKSHQQTKDIYAKLKDISWRLKEKGHKPDTSSILYDVNEEQKEK 647

BLAST of HG10005369.1 vs. NCBI nr
Match: XP_022968999.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 295.4 bits (755), Expect = 3.4e-76
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT KY+IKPG  HYLC+V LLGRAGLLNEAYELVKR+EV+PSADIWA LLS+CRLH+NV 
Sbjct: 475 MTIKYDIKPGPAHYLCMVDLLGRAGLLNEAYELVKRMEVKPSADIWAALLSACRLHRNVV 534

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA MKQWTAVEKVR T+R  GLKKPAGYSLIELD
Sbjct: 535 LAEISAQNIFRTNPTRVSSYICLSNIYAAMKQWTAVEKVRTTMRNYGLKKPAGYSLIELD 594

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGDKSHQQTKDIYAKLKDIS R KE+G+KPDTS +LYDVNEEQK +
Sbjct: 595 SQVHMFFVGDKSHQQTKDIYAKLKDISWRLKEKGHKPDTSSILYDVNEEQKEK 647

BLAST of HG10005369.1 vs. NCBI nr
Match: XP_022953113.1 (putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [Cucurbita moschata])

HSP 1 Score: 295.0 bits (754), Expect = 4.4e-76
Identity = 144/173 (83.24%), Postives = 155/173 (89.60%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT KY+IKPG  HYLCLV LLGRAGLLNEAYELVKR+EVEPSADIWA LLS+CRLH+N+ 
Sbjct: 475 MTIKYDIKPGPAHYLCLVDLLGRAGLLNEAYELVKRMEVEPSADIWAALLSACRLHRNIV 534

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA MKQWTAVEKVR T+R  GLKKPAGYS IELD
Sbjct: 535 LAEISAQNIFRTNPTRVSSYICLSNIYAAMKQWTAVEKVRTTMRNYGLKKPAGYSSIELD 594

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGDKSHQQTKDIYAKLKDIS R KE+G+KPDTS +LYDVNEEQK +
Sbjct: 595 SQVHMFFVGDKSHQQTKDIYAKLKDISWRLKEKGHKPDTSSILYDVNEEQKEK 647

BLAST of HG10005369.1 vs. NCBI nr
Match: XP_023554404.1 (putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 5.8e-76
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT KY+I+PG  HYLCLV LLGRAGLLNEAYELVKR+EVEPSADIWA LLS+CRLH+NV 
Sbjct: 475 MTIKYDIRPGPAHYLCLVDLLGRAGLLNEAYELVKRMEVEPSADIWAALLSACRLHRNVV 534

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA MKQWTAVEKVR T+R  GLKKPAGYSLIELD
Sbjct: 535 LAEISAQNIFRTNPTRVSSYICLSNIYAAMKQWTAVEKVRTTMRNYGLKKPAGYSLIELD 594

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGDKSHQQTKDIYAKLKDIS R KE+G+KPDTS +LYDV+EEQK +
Sbjct: 595 SQVHMFFVGDKSHQQTKDIYAKLKDISWRLKEKGHKPDTSSILYDVSEEQKEK 647

BLAST of HG10005369.1 vs. ExPASy Swiss-Prot
Match: Q9LW32 (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 9.7e-42
Identity = 76/171 (44.44%), Postives = 120/171 (70.18%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           M  ++ ++PG +HY C+V LLGRAG L +AY+L++R++++P + IW++LL++CR+H+NVE
Sbjct: 414 MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVE 473

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI    +F  + S    Y  LS+IYA   +W  VE+VR  ++ RGL KP G+SL+EL+
Sbjct: 474 LAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELN 533

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQK 172
            +VH+F +GD+ H Q + IY  L +++ +  E GY  +TS V +DV+EE+K
Sbjct: 534 GEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584

BLAST of HG10005369.1 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 80/173 (46.24%), Postives = 108/173 (62.43%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT  Y + P S HY C+V LLGRAGLL +A+ L+K +  EP A IW TLL + R+H N E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L E  A  IF   P     Y  LSN+YA+  +W  V K+R  +R +G+KK  GYS IE+ 
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           ++ H F VGD+ H +  +I+A L+++  R K+ GY   TS VL+DV EE+K R
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKER 708

BLAST of HG10005369.1 vs. ExPASy Swiss-Prot
Match: Q9ZVF4 (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H37 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-38
Identity = 77/170 (45.29%), Postives = 109/170 (64.12%), Query Frame = 0

Query: 2   TNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVEL 61
           +N  N++P  +HY C+V LLGR+GLL EAYE +K++ VEP   IW  LL +C +H+++ L
Sbjct: 340 SNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMIL 399

Query: 62  VEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELDS 121
            +  A  +  T P   S +  LSNIYA   +W  V+KVR+ +RK G KK A YS +E + 
Sbjct: 400 GQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEG 459

Query: 122 QVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQK 172
           ++H F  GDKSH Q+K IY KL +I  + ++ GY PDT  V +DV  E+K
Sbjct: 460 KIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEK 509

BLAST of HG10005369.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-38
Identity = 74/171 (43.27%), Postives = 108/171 (63.16%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT  Y + P  +HY C++ LLG +GL  EA E++  +E+EP   IW +LL +C++H NVE
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L E  A+N+ +  P    SY  LSNIYA+  +W  V K RA +  +G+KK  G S IE+D
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQK 172
           S VH F +GDK H + ++IY  L+++    ++ G+ PDTS VL ++ EE K
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWK 666

BLAST of HG10005369.1 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 8.5e-38
Identity = 73/173 (42.20%), Postives = 107/173 (61.85%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           M+ +Y IKP  +HY C+V LLGRAG L EAY+L+K +  EP + +W  LL+SCRL  NV+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI A+ +F   P    +Y  LSNIYA    WT V+ +R  +   GLKK  G S I++ 
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           ++V+    GDKSH Q   I  K+ +IS   ++ G++P+    L+DV E+++ +
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQ 687

BLAST of HG10005369.1 vs. ExPASy TrEMBL
Match: A0A6J1I1A3 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111468131 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT KY+IKPG  HYLC+V LLGRAGLLNEAYELVKR+EV+PSADIWA LLS+CRLH+NV 
Sbjct: 475 MTIKYDIKPGPAHYLCMVDLLGRAGLLNEAYELVKRMEVKPSADIWAALLSACRLHRNVV 534

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA MKQWTAVEKVR T+R  GLKKPAGYSLIELD
Sbjct: 535 LAEISAQNIFRTNPTRVSSYICLSNIYAAMKQWTAVEKVRTTMRNYGLKKPAGYSLIELD 594

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGDKSHQQTKDIYAKLKDIS R KE+G+KPDTS +LYDVNEEQK +
Sbjct: 595 SQVHMFFVGDKSHQQTKDIYAKLKDISWRLKEKGHKPDTSSILYDVNEEQKEK 647

BLAST of HG10005369.1 vs. ExPASy TrEMBL
Match: A0A6J1GMH0 (putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455614 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 144/173 (83.24%), Postives = 155/173 (89.60%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT KY+IKPG  HYLCLV LLGRAGLLNEAYELVKR+EVEPSADIWA LLS+CRLH+N+ 
Sbjct: 475 MTIKYDIKPGPAHYLCLVDLLGRAGLLNEAYELVKRMEVEPSADIWAALLSACRLHRNIV 534

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA MKQWTAVEKVR T+R  GLKKPAGYS IELD
Sbjct: 535 LAEISAQNIFRTNPTRVSSYICLSNIYAAMKQWTAVEKVRTTMRNYGLKKPAGYSSIELD 594

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGDKSHQQTKDIYAKLKDIS R KE+G+KPDTS +LYDVNEEQK +
Sbjct: 595 SQVHMFFVGDKSHQQTKDIYAKLKDISWRLKEKGHKPDTSSILYDVNEEQKEK 647

BLAST of HG10005369.1 vs. ExPASy TrEMBL
Match: A0A6J1C2U5 (pentatricopeptide repeat-containing protein At3g12770-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007757 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.4e-75
Identity = 140/173 (80.92%), Postives = 154/173 (89.02%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT+KYN+KPG  HYLCLV L GRAGLLNE YEL+K +EVEP A+IWA LLS+CRLH+NVE
Sbjct: 474 MTDKYNVKPGFAHYLCLVDLFGRAGLLNETYELIKHMEVEPPAEIWAALLSACRLHRNVE 533

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI AQNIFRTNP+RVSSY CLSNIYA  KQWT VEKVRAT+R+ GLKKPAGYSLIELD
Sbjct: 534 LAEISAQNIFRTNPTRVSSYICLSNIYAAKKQWTDVEKVRATMRRHGLKKPAGYSLIELD 593

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           SQVHMFFVGD+SHQQTKDIYAKLKDIS R KEEG+KPDTS VLYDV+EEQK +
Sbjct: 594 SQVHMFFVGDRSHQQTKDIYAKLKDISWRLKEEGHKPDTSSVLYDVDEEQKEK 646

BLAST of HG10005369.1 vs. ExPASy TrEMBL
Match: A0A6J1C2E2 (pentatricopeptide repeat-containing protein At3g12770-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007757 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.4e-64
Identity = 122/150 (81.33%), Postives = 135/150 (90.00%), Query Frame = 0

Query: 24  AGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVELVEICAQNIFRTNPSRVSSYTCL 83
           +GLLNE YEL+K +EVEP A+IWA LLS+CRLH+NVEL EI AQNIFRTNP+RVSSY CL
Sbjct: 461 SGLLNETYELIKHMEVEPPAEIWAALLSACRLHRNVELAEISAQNIFRTNPTRVSSYICL 520

Query: 84  SNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELDSQVHMFFVGDKSHQQTKDIYAKL 143
           SNIYA  KQWT VEKVRAT+R+ GLKKPAGYSLIELDSQVHMFFVGD+SHQQTKDIYAKL
Sbjct: 521 SNIYAAKKQWTDVEKVRATMRRHGLKKPAGYSLIELDSQVHMFFVGDRSHQQTKDIYAKL 580

Query: 144 KDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           KDIS R KEEG+KPDTS VLYDV+EEQK +
Sbjct: 581 KDISWRLKEEGHKPDTSSVLYDVDEEQKEK 610

BLAST of HG10005369.1 vs. ExPASy TrEMBL
Match: A0A4S4EV31 (DYW_deaminase domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_026652 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 113/173 (65.32%), Postives = 136/173 (78.61%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           M  KYN++PG  HY CLV LLGRAG L+EA+E +K +E++P++DIWA LLS+CRLH+NVE
Sbjct: 488 MKEKYNVQPGLAHYSCLVDLLGRAGHLDEAFEFIKAMEIKPTSDIWAALLSACRLHRNVE 547

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L E+ AQ +F  NP RVSSY CLSN+YA  K+W  VE+VRA VR++GLKKP G+S IELD
Sbjct: 548 LAELSAQRVFEMNPKRVSSYVCLSNLYAAEKRWDEVERVRALVRRKGLKKPPGFSFIELD 607

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
             VH F VGDKSHQQ  DIYAKLK++S R KE GYKPDTS VLYDV EE K +
Sbjct: 608 KVVHRFLVGDKSHQQKDDIYAKLKELSQRLKEAGYKPDTSSVLYDVEEEVKEK 660

BLAST of HG10005369.1 vs. TAIR 10
Match: AT3G26782.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-43
Identity = 76/171 (44.44%), Postives = 120/171 (70.18%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           M  ++ ++PG +HY C+V LLGRAG L +AY+L++R++++P + IW++LL++CR+H+NVE
Sbjct: 414 MKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVE 473

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI    +F  + S    Y  LS+IYA   +W  VE+VR  ++ RGL KP G+SL+EL+
Sbjct: 474 LAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELN 533

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQK 172
            +VH+F +GD+ H Q + IY  L +++ +  E GY  +TS V +DV+EE+K
Sbjct: 534 GEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584

BLAST of HG10005369.1 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 80/173 (46.24%), Postives = 108/173 (62.43%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT  Y + P S HY C+V LLGRAGLL +A+ L+K +  EP A IW TLL + R+H N E
Sbjct: 536 MTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE 595

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L E  A  IF   P     Y  LSN+YA+  +W  V K+R  +R +G+KK  GYS IE+ 
Sbjct: 596 LAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQ 655

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           ++ H F VGD+ H +  +I+A L+++  R K+ GY   TS VL+DV EE+K R
Sbjct: 656 NKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKER 708

BLAST of HG10005369.1 vs. TAIR 10
Match: AT2G01510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 9.3e-40
Identity = 77/170 (45.29%), Postives = 109/170 (64.12%), Query Frame = 0

Query: 2   TNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVEL 61
           +N  N++P  +HY C+V LLGR+GLL EAYE +K++ VEP   IW  LL +C +H+++ L
Sbjct: 340 SNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMIL 399

Query: 62  VEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELDS 121
            +  A  +  T P   S +  LSNIYA   +W  V+KVR+ +RK G KK A YS +E + 
Sbjct: 400 GQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEG 459

Query: 122 QVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQK 172
           ++H F  GDKSH Q+K IY KL +I  + ++ GY PDT  V +DV  E+K
Sbjct: 460 KIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEK 509

BLAST of HG10005369.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 74/171 (43.27%), Postives = 108/171 (63.16%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           MT  Y + P  +HY C++ LLG +GL  EA E++  +E+EP   IW +LL +C++H NVE
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L E  A+N+ +  P    SY  LSNIYA+  +W  V K RA +  +G+KK  G S IE+D
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQK 172
           S VH F +GDK H + ++IY  L+++    ++ G+ PDTS VL ++ EE K
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWK 666

BLAST of HG10005369.1 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 158.3 bits (399), Expect = 6.0e-39
Identity = 73/173 (42.20%), Postives = 107/173 (61.85%), Query Frame = 0

Query: 1   MTNKYNIKPGSDHYLCLVVLLGRAGLLNEAYELVKRVEVEPSADIWATLLSSCRLHQNVE 60
           M+ +Y IKP  +HY C+V LLGRAG L EAY+L+K +  EP + +W  LL+SCRL  NV+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 61  LVEICAQNIFRTNPSRVSSYTCLSNIYATMKQWTAVEKVRATVRKRGLKKPAGYSLIELD 120
           L EI A+ +F   P    +Y  LSNIYA    WT V+ +R  +   GLKK  G S I++ 
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 121 SQVHMFFVGDKSHQQTKDIYAKLKDISTRFKEEGYKPDTSPVLYDVNEEQKRR 174
           ++V+    GDKSH Q   I  K+ +IS   ++ G++P+    L+DV E+++ +
Sbjct: 635 NRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQ 687

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038887372.19.9e-8489.60pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benin... [more]
KAG6572313.15.2e-7784.39Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022968999.13.4e-7683.24pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Cucur... [more]
XP_022953113.14.4e-7683.24putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [C... [more]
XP_023554404.15.8e-7683.24putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [C... [more]
Match NameE-valueIdentityDescription
Q9LW329.7e-4244.44Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop... [more]
Q9SY022.4e-4046.24Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
Q9ZVF41.3e-3845.29Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidop... [more]
Q9LN012.2e-3843.27Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9LNU68.5e-3842.20Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1I1A31.6e-7683.24pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like OS=Cuc... [more]
A0A6J1GMH02.1e-7683.24putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS... [more]
A0A6J1C2U52.4e-7580.92pentatricopeptide repeat-containing protein At3g12770-like isoform X1 OS=Momordi... [more]
A0A6J1C2E29.4e-6481.33pentatricopeptide repeat-containing protein At3g12770-like isoform X2 OS=Momordi... [more]
A0A4S4EV311.3e-6065.32DYW_deaminase domain-containing protein OS=Camellia sinensis var. sinensis OX=54... [more]
Match NameE-valueIdentityDescription
AT3G26782.16.9e-4344.44Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G02750.11.7e-4146.24Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G01510.19.3e-4045.29Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G08070.11.6e-3943.27Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G20230.16.0e-3942.20Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 113..173
e-value: 2.8E-12
score: 46.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..146
e-value: 2.9E-11
score: 45.3
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 7..173
NoneNo IPR availablePANTHERPTHR47928:SF41SUBFAMILY NOT NAMEDcoord: 7..173

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
HG10005369HG10005369gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
HG10005369.1-cdsHG10005369.1-cds-Chr07:1888408..1888974CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
HG10005369.1HG10005369.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding