Lag0034231 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0034231
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribosomal RNA-processing protein 40
Location	chr3: 5469138 .. 5471703 (+)
RNA-Seq Expression	Lag0034231
Synteny	Lag0034231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAAAATCTTCCCGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTAAGTTCAAAATCAATCTCATCTGTCCGTTTTCCCCTTTCTTTTTTCCTGTTCGATGTTCTAGGGCTTGTAAATGAATTGCAGTATTCGGTTATCTTTACTGGAATGTCGATTGTTTAGGTTCCCGGAGATGTGGTCCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGTCTGTTAGGGTTTTTGTTTCCAATGTTTATGCATCTCCATTTACGTTTCTGCCCCATCTTCTACTACCACCAGTTTTCCCATCGATTTTAAATTTAGTTTTCATAATCTTTTGACCCCACATTCAAATGTATTTCGAATATCGTTTAGGTTTCGGCAATCGAAGTTCGCATTGTTGCATTTGTACTTGTGTTGATTACAGGATCGTTTACCTTCATGTTGTTTTATCTTTCAGGACCATGATGCTATTTCTGTCTCGAAAGTTGGAAATCTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTCAGTAAATGACTCTGTTCAATTGACAATGGGGATTCTTATATTAATTGCTCTTTCAGCTAACTTTTGAATTGTGAACTTCAACGCTAGTTTCGGTGGTTTTCTTCAATTGAATTGACTACCAATATCATTCTCGTGTTTAGTTTTAATAAAATGTGCTATTTTCCAGTATGTGCCATGTGCAGAAGATTGTGTACTTGGAATAGTGGTCGACTCTAGAGCCGATGTAAGTGCTGCTTTGTTGTTTAAATATGTTTATGTTCAATTATATTCATAAAAGAAAATGTTTATGTTCAATTAGGAAATAATTGGCTCCTGCTGTTTCTGATTGATATGCGTAGATGGTTTCACTGGTATCCATGTCTAACAAGTGTTACGATACCAAGGAAGCTTTTGGTTCGATTACCATGTAAACTCTCATCTTATAATTCTTTTTTTTTTTCACATTGTTTGCAGAATTTTCTTGTTGACATAAAAGGTCCTGCATTGGCCTTTCTTCCTGTTCTTGCCTTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGGTGTGTATAATTTGTTGTGTTATTTTCACCATATATCCTTTTGGTATGGTTGCTCCTCTGTCTTACTTCTTTAGAAGTTTTGATACTTTGTCAGTTCATTTGTTATTCGTTTTTTTATCTTCTTCCATTTTTTTGGGTGCTGGTAAGAAATATTATTTGCATATCAGTAAAAAGGCGTATTCTTTTACCTTTTGAATTTGGCTTTTTTCTTATCTGCAATCTACTTATCCTAACTCTGGGAGATATGTCCTCAGTGTATTTGGTCCAAATTAACATGTTTAACTATTCTCCTTAAAACATGTCCTATTGATTCTCTGTTTTGTAGATGGGTGCCCTGCTTTACGTACGGGTAGTGAAGGTAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGGTTAGTTAATTCCTTCCTCTCTCAGCGTCCAATAATTTGCTTGAAGGTTGAAACAGTCAATCAAAGAAATATATTGATGTTGCTGTGAACTCATCCTCTTAAGAGGGGTGGGCAGGGCCTGTATACTTTATGCAAGTTCATGTTTCTTTTCAGTTTTTGGTTGTTGTGATTGACATGAAGTATATCTCATGTGAGTATCATTTTGCTTGATACAGCCAGCGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGTAAGCTGCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCAAGTCAATCTTCTGATCATTCATTCACATTGTTGATTTTATCCTATCTTCTAGGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTATCAATGGCCGTGTTTGGGTAATATTTCGCCTTAGATTTTTGTTGGTAGACTCAATAGTTTACTCTGTAAAATTCTCTTTCCATGCAAATAATAAAAGTAAAAAGTAGGACTGAGTTGAGTTAAAGTCATCGTGATCACATACCTAAGCTTTAATATCCCACGAGTTGATCTTGACAATTGGATATAGTAGGGCCAAGCAGTTGTCTCCGTTTCATCTTTCATGAGAATAGTGGAGATGCGCACAAGCTGATAAAAAAAAAAAACTGTTCCACTAATTTCTTCTAACGCATATTAAGCTTCGAAAACTGTCCTGATCTGGCAGTATTTTAGATTGTTGAAATTATTCTCCATTCTTGACATTGCCCTTGGCACCTCTAATGTAACCGTTTGACATTTGAAGATGTAATTTCTTCTATCAAATTTACTGATAAATAGACTTTCGCATGTCTATTTCCAGGTCAATGCTGATTCTCCGTCCACAACCATCGTTGTCTCAAATGCAATAATGAACTCGGAAACTCTCACTGGGGTCCAACAGAGAATCATGGTGGACAAACTTCTTAATAATTTAAAGCTGTCAAGTTAG

mRNA sequence

ATGGTTGAAAAATCTTCCCGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCCGGAGATGTGGTCCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCTCGAAAGTTGGAAATCTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTGCCATGTGCAGAAGATTGTGTACTTGGAATAGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTGCATTGGCCTTTCTTCCTGTTCTTGCCTTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTACGTACGGGTAGTGAAGGTAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGCGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTATCAATGGCCGTGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATCGTTGTCTCAAATGCAATAATGAACTCGGAAACTCTCACTGGGGTCCAACAGAGAATCATGGTGGACAAACTTCTTAATAATTTAAAGCTGTCAAGTTAG

Coding sequence (CDS)

ATGGTTGAAAAATCTTCCCGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCCGGAGATGTGGTCCTCGACCTCTCAAACATGGCCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCTCGAAAGTTGGAAATCTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTGCCATGTGCAGAAGATTGTGTACTTGGAATAGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTGCATTGGCCTTTCTTCCTGTTCTTGCCTTTGAAGGAGGAACAAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTACGTACGGGTAGTGAAGGTAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGCGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAGAAGCTTTCATTCGAGACAGCAGTTGGTATCAATGGCCGTGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATCGTTGTCTCAAATGCAATAATGAACTCGGAAACTCTCACTGGGGTCCAACAGAGAATCATGGTGGACAAACTTCTTAATAATTTAAAGCTGTCAAGTTAG

Protein sequence

MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLKLSS

Homology

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BLAST of Lag0034231 vs. NCBI nr
Match: KAG6589448.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-129
Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1    MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
            MVEKSS SSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVG LRFSKP
Sbjct: 786  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 845

Query: 61   NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
            NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 846  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 905

Query: 121  EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
            EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 906  EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 965

Query: 181  LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
            LESFGKKLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 966  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 1025

Query: 241  LSS 244
            LSS
Sbjct: 1026 LSS 1028

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BLAST of Lag0034231 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 471.5 bits (1212), Expect = 4.5e-129
Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVG LRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

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BLAST of Lag0034231 vs. NCBI nr
Match: XP_022921727.1 (putative exosome complex component rrp40 [Cucurbita moschata])

HSP 1 Score: 470.7 bits (1210), Expect = 7.6e-129
Identity = 235/243 (96.71%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISVSKVG LRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. NCBI nr
Match: XP_023515767.1 (putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 468.4 bits (1204), Expect = 3.8e-128
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVG LRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LESFG KLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGNKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. NCBI nr
Match: XP_022988424.1 (putative exosome complex component rrp40 [Cucurbita maxima])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVG LRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVG+NGRVWVNADSPSTTIVVSNA++NSETL+GVQQRIMVD LLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46
Identity = 101/228 (44.30%), Postives = 137/228 (60.09%), Query Frame = 0


Query: 11  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKPNK-YWVESSQ 70
           TL DQ VVPGDV+  + ++    +++G GL Q  D +  +K G LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 71  KRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVR 130
           KRYVP  ED V+G +++  A++F VDI     A L   +FEG T+ N P   +G L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 122

Query: 131 VVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLS 190
           V   N  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+  GK + 
Sbjct: 123 VTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCFLLQILGKHIP 182

Query: 191 FETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLN 238
           +E AVG+NGRVW+N+ S   TIVVSN I NS+ +   Q    + K L+
Sbjct: 183 YEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQIEPFILKSLS 226

[Close]

BLAST of Lag0034231 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.6e-39
Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = 0


Query: 17  VVPGDVVLDLSNMA-NETIKLGGGLRQDHDAISVSKVGNLRFSKPNKYWVESSQKRYVPC 76
           V+PG+ +  +  +A ++ + LG GLR+  D +  SK G LR  +P  +WV++ Q+RY+P 
Sbjct: 8   VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWVDNYQRRYIPA 67

Query: 77  AEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNP 136
             D +LGIV     D + VDI     A +  LAFE  +++N P    G L+Y RV+  + 
Sbjct: 68  RGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDLIYARVLNASA 127

Query: 137 GMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVG 196
            + PEL C ++ GK+   G+L DG+ F+CS  L RMLL    CPVL +  ++L +E AVG
Sbjct: 128 DIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALTRELPYEIAVG 187

Query: 197 INGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNL 240
           +NGR+W+ A S   T+ ++NAI   E  +G  +   +DK+  NL
Sbjct: 188 VNGRIWLKAHSLKETVALANAISALEQ-SGCAE---IDKICGNL 226

[Close]

BLAST of Lag0034231 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-38
Identity = 91/257 (35.41%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 6   SRSSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDHD 65
           +R++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D
Sbjct: 17  ARAARTVLDQVVLPGEELLLPDQEDGDGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGD 76

Query: 66  AISVSKVGNLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGP 125
            + V+K G LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G 
Sbjct: 77  RLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGS 136

Query: 126 ALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KD 185
             A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +D
Sbjct: 137 EPASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQD 196

Query: 186 GYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIM 236
           G +F+ + GL R LL +P C +L+  GK    E   G+NGR+WV A +   T++++N + 
Sbjct: 197 GLLFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILE 256

[Close]

BLAST of Lag0034231 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 90/257 (35.02%), Postives = 141/257 (54.86%), Query Frame = 0


Query: 6   SRSSSTLVDQPVVPGDVV------------------LDLSNMANETIKL--GGGLRQDHD 65
           +R++ T++ Q V+PG+ +                  L L+  A   +++  G GLR+  D
Sbjct: 17  ARAARTVLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRCGD 76

Query: 66  AISVSKVGNLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGP 125
            + V+K G LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G 
Sbjct: 77  RLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGS 136

Query: 126 ALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KD 185
             A L  L+FEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +D
Sbjct: 137 EPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQD 196

Query: 186 GYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIM 236
           G +F+ + GL R LL +P C +++  GK    E   G+NGR+WV A +   T++++N + 
Sbjct: 197 GLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILE 256

[Close]

BLAST of Lag0034231 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36
Identity = 82/205 (40.00%), Postives = 122/205 (59.51%), Query Frame = 0


Query: 37  GGGLRQDHDAISVSKVGNLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRADN 96
           G GLR+  D + V+K G LR  +P+      YWV+S QKRYVP   D V+GIV+    D 
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDI 127

Query: 97  FLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAA 156
           F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A 
Sbjct: 128 FKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRAN 187

Query: 157 GFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGINGRVWVNADSPSTT 216
           G G++ +DG +F+ + GL R LL +P C +++  GK    E   G+NGR+WV A +   T
Sbjct: 188 GMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQT 247

Query: 217 IVVSNAIMNSETLTGVQQRIMVDKL 236
           ++++N +   E +T  Q++ +  +L
Sbjct: 248 LILANVLEACEHMTTEQRKQIFARL 271

[Close]

BLAST of Lag0034231 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.7e-129
Identity = 235/243 (96.71%), Postives = 239/243 (98.35%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISVSKVG LRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVG+NGRVWVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. ExPASy TrEMBL
Match: A0A6J1JLH7 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 PE=3 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.1e-128
Identity = 232/243 (95.47%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVG LRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGPALAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LESFGKKLSFETAVG+NGRVWVNADSPSTTIVVSNA++NSETL+GVQQRIMVD LLNNLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. ExPASy TrEMBL
Match: A0A6J1ECW1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111433176 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 2.9e-126
Identity = 231/243 (95.06%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVG LRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LES GKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. ExPASy TrEMBL
Match: A0A6J1I8H3 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.5e-126
Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEKSS SSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVG LRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFG LKDGY+F+CSTGLSRMLLSSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGHLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LES GKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETL+GVQQRIMVDKLLNNLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.5e-125
Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           MVEK S SSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISVSKVG LRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPST IVVSNAI+NSETL+GVQQRIMVDKLL NLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Lag0034231 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 347.8 bits (891), Expect = 6.9e-96
Identity = 174/236 (73.73%), Postives = 201/236 (85.17%), Query Frame = 0


Query: 1   MVEKSSRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKP 60
           M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD+DAIS  + G L +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120
           NKYW+ESS KRY+P  +D VLGIVVDSRADNF VDIKGP LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180
           E+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+SPT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180

Query: 181 LESFGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLL 237
           +E+ GKKLSFE AVG+NGRVWVNA +P   I+V+NAIMNSE+L+G QQRIMV+KLL
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLL 236

[Close]

BLAST of Lag0034231 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 347.1 bits (889), Expect = 1.2e-95
Identity = 169/234 (72.22%), Postives = 194/234 (82.91%), Query Frame = 0


Query: 6   SRSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGNLRFSKPNKYWV 65
           S S ++L+DQ VVPGDVVLDLSNM N+TIKLG GLRQD++ ISV + G LR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 66  ESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGAL 125
           ESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 126 LYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFG 185
           LY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+ G
Sbjct: 126 LYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALG 185

Query: 186 KKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLTGVQQRIMVDKLLNNL 240
           KKLSFETA G+NGR WV+A +P   I+V+NA+MNSETL+G QQRIMV+KLL  +
Sbjct: 186 KKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239

[Close]

BLAST of Lag0034231 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 315.5 bits (807), Expect = 3.8e-86
Identity = 152/211 (72.04%), Postives = 174/211 (82.46%), Query Frame = 0


Query: 29  MANETIKLGGGLRQDHDAISVSKVGNLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR 88
           M N+TIKLG GLRQD++ ISV + G LR+SKPNKYWVESS KRYVP  ED VLGIVVD +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 89  ADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASG 148
            +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SG
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120

Query: 149 KAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGINGRVWVNADSPS 208
           KAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+ GKKLSFETA G+NGR WV+A +P 
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180

Query: 209 TTIVVSNAIMNSETLTGVQQRIMVDKLLNNL 240
             I+V+NA+MNSETL+G QQRIMV+KLL  +
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKLLEKI 211

The following BLAST results are available for this feature:

BLAST of Lag0034231 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589448.1	4.5e-129	97.12	Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7023129.1	4.5e-129	97.12	putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp....	[more]
XP_022921727.1	7.6e-129	96.71	putative exosome complex component rrp40 [Cucurbita moschata]	[more]
XP_023515767.1	3.8e-128	96.30	putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo]	[more]
XP_022988424.1	1.9e-127	95.47	putative exosome complex component rrp40 [Cucurbita maxima]	[more]

BLAST of Lag0034231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	1.7e-46	44.30	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8IPX7	2.6e-39	38.39	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q3T0E1	4.9e-38	35.41	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q9NQT5	9.3e-37	35.02	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]
Q7TQK4	1.2e-36	40.00	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]

BLAST of Lag0034231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1A1	3.7e-129	96.71	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]
A0A6J1JLH7	9.1e-128	95.47	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 ...	[more]
A0A6J1ECW1	2.9e-126	95.06	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11143317...	[more]
A0A6J1I8H3	6.5e-126	94.65	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 ...	[more]
A0A0A0LP58	2.5e-125	94.65	Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 P...	[more]

BLAST of Lag0034231 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32175.1	6.9e-96	73.73	PNAS-3 related	[more]
AT2G25355.1	1.2e-95	72.22	PNAS-3 related	[more]
AT2G25355.2	3.8e-86	72.04	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 78..154 e-value: 8.8E-25 score: 88.2
None	No IPR available	GENE3D	2.40.50.100		coord: 6..73 e-value: 3.3E-14 score: 54.8
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 11..237
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 9..70
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 159..207 e-value: 3.1E-16 score: 59.5
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 155..238 e-value: 2.2E-27 score: 96.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 158..240
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..237
IPR037319	Rrp40, S1 domain	CDD	cd05790	S1_Rrp40	coord: 71..156 e-value: 2.263E-38 score: 126.99
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 70..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0034231.1	Lag0034231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071034	CUT catabolic process
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0071049	nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding