Sed0012487 (gene) Chayote v1

Overview


Name	Sed0012487
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein
Location	LG09: 35134003 .. 35135302 (+)
RNA-Seq Expression	Sed0012487
Synteny	Sed0012487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGGAGGCTTCCAGATCACATTATGGAAGTAATATTGGGTAAAATCGGGATCATGTATTTGCCTATGTGCAGGAGTGTGTGCACATCCTGGAATGTTGTGATTCAAAATTATGCCAAATCTCGTAATAAAATGAGTCCCAACACTTTGTTTCTGTGTACATCATTCACGCCTTCACTCCACTTCATCGATCTCGATCCAAAGCACTTGGCGGGCCGCAGTTTTGATGCTTCAAAACATTTCCACGGCGACTGGCTCGGCCTAGAAATCGTGGACTCCTGCAACAGCTTGATCCTTGTTTTGAAATACAGGACGCATCCAGTGGATGAAGTGTACGTAACATTCAATCCGAGGATGAATGAGTACGTGGAACTTGGAATGAACGAAGAGTACGGAATAATGAATCCAATGACGAATGAGTACATGAAACTCCCGATTAGCGAGGCAGACGAAAAAAGAGGGAGTGAGTTTTTCAAGTACGGATTGGGGTACGGTCAGGAGGGCTACAAAGTAGTGAGGGTTTATTTCGATGAAGAACTAAACAGATCTGTGTTTGAGATGTTGTTGTCATGGGAGGGAAAGCAGCCGAATTGGAGCTGTGTGAATCATGCACCCTGTCCCATTGATTACGATGGTGTTTACTCGGATGGAGCTGTGTATTGGGTTGGAGTCGACACGTCCGATAGGGAATGTGACAGAGTTTTCGTATATCGATTCGATGTTGATAGTAAGAGAATGGAAACAACACTGCTTTCTCTCACTGGGGGGGGTAAGTATACAGAAGCGTTCCTCAGGACATTCAATGGAAGCATTTATATAAATGTTTTATCATATTCCAGTACTAATTACAGAATTGAATTGCAAAAAATGGGAGGTGGAAGAAGTTCATGGAATAGGGAAATTGTGGTGGATATGCCTAATGGATGGGTGCCGCGGTCCTTCCCGTGTCAACTCATTGTAGACTGTGAGGATGGTGACACCTTCTGTCTTTTAAATGAACAAACTTTCGTCTTCTTTGATTGGAAATTTGGGAGCATCAAGCCATTCAATAATAATTCATCCCTCCCAATTTCCAGCATTGGTCAGATTCACTCCTTCAATTTTGCTTCTCTCCCAACAATTTTGGGTATACATCAGGATCTTTACCCTATTTGTTTTGTATGAATATTCTTTATTTTTAACATTCCTTTCCATTTTAAATTAATATTTCTTTTTCATCATTTTAAAAAGCCTAATCTTATGGTTAGTGCATATTTTGCAGGTAAATTTATCCTTAAATCTTAAGGAGGTGTCATGA

mRNA sequence

ATGCATAGGAGGCTTCCAGATCACATTATGGAAGTAATATTGGGTAAAATCGGGATCATGTATTTGCCTATGTGCAGGAGTGTGTGCACATCCTGGAATGTTGTGATTCAAAATTATGCCAAATCTCGTAATAAAATGAGTCCCAACACTTTGTTTCTGTGTACATCATTCACGCCTTCACTCCACTTCATCGATCTCGATCCAAAGCACTTGGCGGGCCGCAGTTTTGATGCTTCAAAACATTTCCACGGCGACTGGCTCGGCCTAGAAATCGTGGACTCCTGCAACAGCTTGATCCTTGTTTTGAAATACAGGACGCATCCAGTGGATGAAGTGTACGTAACATTCAATCCGAGGATGAATGAGTACGTGGAACTTGGAATGAACGAAGAGTACGGAATAATGAATCCAATGACGAATGAGTACATGAAACTCCCGATTAGCGAGGCAGACGAAAAAAGAGGGAGTGAGTTTTTCAAGTACGGATTGGGGTACGGTCAGGAGGGCTACAAAGTAGTGAGGGTTTATTTCGATGAAGAACTAAACAGATCTGTGTTTGAGATGTTGTTGTCATGGGAGGGAAAGCAGCCGAATTGGAGCTGTGTGAATCATGCACCCTGTCCCATTGATTACGATGGTGTTTACTCGGATGGAGCTGTGTATTGGGTTGGAGTCGACACGTCCGATAGGGAATGTGACAGAGTTTTCGTATATCGATTCGATGTTGATAGTAAGAGAATGGAAACAACACTGCTTTCTCTCACTGGGGGGGGTAAGTATACAGAAGCGTTCCTCAGGACATTCAATGGAAGCATTTATATAAATGTTTTATCATATTCCAGTACTAATTACAGAATTGAATTGCAAAAAATGGGAGGTGGAAGAAGTTCATGGAATAGGGAAATTGTGGTGGATATGCCTAATGGATGGGTGCCGCGGTCCTTCCCGTGTCAACTCATTGTAGACTGTGAGGATGGTGACACCTTCTGTCTTTTAAATGAACAAACTTTCGTCTTCTTTGATTGGAAATTTGGGAGCATCAAGCCATTCAATAATAATTCATCCCTCCCAATTTCCAGCATTGGTCAGATTCACTCCTTCAATTTTGCTTCTCTCCCAACAATTTTGGGTATACATCAGGATCTTTACCCTATTTGTTTTGTAAATTTATCCTTAAATCTTAAGGAGGTGTCATGA

Coding sequence (CDS)

ATGCATAGGAGGCTTCCAGATCACATTATGGAAGTAATATTGGGTAAAATCGGGATCATGTATTTGCCTATGTGCAGGAGTGTGTGCACATCCTGGAATGTTGTGATTCAAAATTATGCCAAATCTCGTAATAAAATGAGTCCCAACACTTTGTTTCTGTGTACATCATTCACGCCTTCACTCCACTTCATCGATCTCGATCCAAAGCACTTGGCGGGCCGCAGTTTTGATGCTTCAAAACATTTCCACGGCGACTGGCTCGGCCTAGAAATCGTGGACTCCTGCAACAGCTTGATCCTTGTTTTGAAATACAGGACGCATCCAGTGGATGAAGTGTACGTAACATTCAATCCGAGGATGAATGAGTACGTGGAACTTGGAATGAACGAAGAGTACGGAATAATGAATCCAATGACGAATGAGTACATGAAACTCCCGATTAGCGAGGCAGACGAAAAAAGAGGGAGTGAGTTTTTCAAGTACGGATTGGGGTACGGTCAGGAGGGCTACAAAGTAGTGAGGGTTTATTTCGATGAAGAACTAAACAGATCTGTGTTTGAGATGTTGTTGTCATGGGAGGGAAAGCAGCCGAATTGGAGCTGTGTGAATCATGCACCCTGTCCCATTGATTACGATGGTGTTTACTCGGATGGAGCTGTGTATTGGGTTGGAGTCGACACGTCCGATAGGGAATGTGACAGAGTTTTCGTATATCGATTCGATGTTGATAGTAAGAGAATGGAAACAACACTGCTTTCTCTCACTGGGGGGGGTAAGTATACAGAAGCGTTCCTCAGGACATTCAATGGAAGCATTTATATAAATGTTTTATCATATTCCAGTACTAATTACAGAATTGAATTGCAAAAAATGGGAGGTGGAAGAAGTTCATGGAATAGGGAAATTGTGGTGGATATGCCTAATGGATGGGTGCCGCGGTCCTTCCCGTGTCAACTCATTGTAGACTGTGAGGATGGTGACACCTTCTGTCTTTTAAATGAACAAACTTTCGTCTTCTTTGATTGGAAATTTGGGAGCATCAAGCCATTCAATAATAATTCATCCCTCCCAATTTCCAGCATTGGTCAGATTCACTCCTTCAATTTTGCTTCTCTCCCAACAATTTTGGGTATACATCAGGATCTTTACCCTATTTGTTTTGTAAATTTATCCTTAAATCTTAAGGAGGTGTCATGA

Protein sequence

MHRRLPDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSFTPSLHFIDLDPKHLAGRSFDASKHFHGDWLGLEIVDSCNSLILVLKYRTHPVDEVYVTFNPRMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEKRGSEFFKYGLGYGQEGYKVVRVYFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYDGVYSDGAVYWVGVDTSDRECDRVFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGGRSSWNREIVVDMPNGWVPRSFPCQLIVDCEDGDTFCLLNEQTFVFFDWKFGSIKPFNNNSSLPISSIGQIHSFNFASLPTILGIHQDLYPICFVNLSLNLKEVS

Homology

[Close]

BLAST of Sed0012487 vs. NCBI nr
Match: XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-28
Identity = 115/400 (28.75%), Postives = 182/400 (45.50%), Query Frame = 0


Query: 4   RLPDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTS------- 63
           RLP HI+  I  K+ I  LP CR VC +WN ++  YA S   +   TLFL  +       
Sbjct: 17  RLPPHIVRAIFSKLSISNLPTCRVVCKTWNNLVLEYASSTKFLPTTTLFLSMADEISNYI 76

Query: 64  -------FTPSLHFIDLDPKHLAGRSFDASKHFHGDWLGLEIVDSCNSLILVLKYRTHPV 123
                    P +H +D+D K     S+ AS  F GDW  + IV+SCN L+ + K+    +
Sbjct: 77  PFKSTPWCNPKIHCVDIDSK----TSYVASFGFEGDWSYITIVNSCNGLLYICKFTFDSL 136

Query: 124 DEVYVTFNPRMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEKRGSEFFKYGLGYG--- 183
            E                     GI+NPMTNE+M++P  E       E   + +G+G   
Sbjct: 137 CE---------------------GILNPMTNEFMEIPQPEI------ELDVHSIGFGFSP 196

Query: 184 -QEGYKVVRVYFD--EELNRSVFEM-LLSWEGKQPNWSCVNHAPCPIDYDGVYSDGAVYW 243
             + YK+ R   +  E L +  + M + +++     W      P  + + G Y +G +YW
Sbjct: 197 RTKQYKLFRTEPEVLENLKKCHYIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYW 256

Query: 244 VGVDTSDRECDRVFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIY--INVLS-- 303
           +G    ++E + V +Y  DVD+++ME T  +L  G       ++ F   +Y  I+++   
Sbjct: 257 IG-KKLEKEGEAV-IYALDVDTEQMECT-ATLEIGPSLKNGSIKIFEERVYAIISLMDKR 316

Query: 304 YSSTNYRIELQKMGGGRSSWNREIVVDMPNGWVPRSFPCQLIVDCEDGDTFCLLNEQTF- 363
            S T+Y+IEL +M   + SW +E  +D        SF   LI   EDG+    + +  F 
Sbjct: 317 VSPTSYKIELWRM-QKKDSWIKEFSID------EESF--GLITVFEDGELLIAIKDNIFR 373

Query: 364 VFFDWKFGSIKPFNNNSS-LPISSIGQIHSFNFASLPTIL 377
           +    K   IK  N++ S + +     I+S NF     IL
Sbjct: 377 LDKSRKKIKIKTLNSSESRIKVIGCNTINSINFECFSNIL 373

[Close]

BLAST of Sed0012487 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-28
Identity = 109/392 (27.81%), Postives = 175/392 (44.64%), Query Frame = 0


Query: 6   PDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSF---TPSLH 65
           PD+I++VIL K+ +  L  CR VC SWN ++        K  P +LF+  ++   + +L+
Sbjct: 19  PDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTC-----KFDP-SLFISLAYDCPSRTLY 78

Query: 66  FIDLDPKHLAGRSFDASKHFHGDW----LGLEIVDSCNSLILVLKYRTHPVDEVYVTFNP 125
            +D DP +  G +   S  FH  +      + I+++CN L+ +L  +  P    YV    
Sbjct: 79  CVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISKRKPGSVSYV---- 138

Query: 126 RMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEK-RGSEFFKYGLGYG--QEGYKVVRV 185
                         GI+NPMTNEY K P  ++         + YGLG+   ++ YK+ R 
Sbjct: 139 -------------LGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIART 198

Query: 186 YFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYD-GVYSDGAVYWVGVDTSDRECDR 245
            F  + + ++ E + ++      W+ V   P  +  D GVY +G +YWV       +   
Sbjct: 199 SFRPDESTTLVE-IFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSI 258

Query: 246 VFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGG 305
             +YR D++++ +E        GG +   F   F+G++Y+ V    S N + ++ KM   
Sbjct: 259 STIYRLDIENENLEKISCPQHLGGHF---FFGVFDGTLYLTV----SKNNKYQVWKM-KD 318

Query: 306 RSSWNREIVVDMPNGWVPRSFPCQ--------LIVDCEDGDTFCLLNEQTFVFFDWKFGS 365
             SW +  V+  P        P Q         I  CEDG   CLL     + +D K  S
Sbjct: 319 NFSWIKAFVISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 378

Query: 366 IKPFNNNSSLPIS--SIGQIHSFNFASLPTIL 377
            +   + S        +  I SFNF SLP IL
Sbjct: 379 AEILTDQSVKVEKHLHVHHIDSFNFNSLPNIL 378

[Close]

BLAST of Sed0012487 vs. NCBI nr
Match: XP_008439950.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-28
Identity = 109/392 (27.81%), Postives = 175/392 (44.64%), Query Frame = 0


Query: 6   PDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSF---TPSLH 65
           PD+I++VIL K+ +  L  CR VC SWN ++        K  P +LF+  ++   + +L+
Sbjct: 19  PDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTC-----KFDP-SLFISLAYDCPSRTLY 78

Query: 66  FIDLDPKHLAGRSFDASKHFHGDW----LGLEIVDSCNSLILVLKYRTHPVDEVYVTFNP 125
            +D DP +  G +   S  FH  +      + I+++CN L+ +L  +  P    YV    
Sbjct: 79  CVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISKRKPGSVSYV---- 138

Query: 126 RMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEK-RGSEFFKYGLGYG--QEGYKVVRV 185
                         GI+NPMTNEY K P  ++         + YGLG+   ++ YK+ R 
Sbjct: 139 -------------LGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIART 198

Query: 186 YFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYD-GVYSDGAVYWVGVDTSDRECDR 245
            F  + + ++ E + ++      W+ V   P  +  D GVY +G +YWV       +   
Sbjct: 199 SFRPDESTTLVE-IFAFGSIYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSI 258

Query: 246 VFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGG 305
             +YR D++++ +E        GG +   F   F+G++Y+ V    S N + ++ KM   
Sbjct: 259 STIYRLDIENENLEKISCPQHLGGHF---FFGVFDGTLYLTV----SKNNKYQVWKM-KD 318

Query: 306 RSSWNREIVVDMPNGWVPRSFPCQ--------LIVDCEDGDTFCLLNEQTFVFFDWKFGS 365
             SW +  V+  P        P Q         I  CEDG   CLL     + +D K  S
Sbjct: 319 NFSWIKAFVISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 378

Query: 366 IKPFNNNSSLPIS--SIGQIHSFNFASLPTIL 377
            +   + S        +  I SFNF SLP IL
Sbjct: 379 AEILTDQSVKVEKHLHVHHIDSFNFNSLPNIL 378

[Close]

BLAST of Sed0012487 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-27
Identity = 113/398 (28.39%), Postives = 179/398 (44.97%), Query Frame = 0


Query: 5   LPDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSFT---PSL 64
           LP  ++++I  K+    LP CR V T+WN +I +  K    +S + LF    ++   P+L
Sbjct: 16  LPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISS-CKFDPSISISHLFFARFYSSRHPNL 75

Query: 65  HFIDLDPKHLAGRSFDASKHFHGDWLG----LEIVDSCNSLILVL----KYRTHPVDEVY 124
           H ++ DP+H  G S  AS  FH D       + I++SC+ LI ++    + R H +D V 
Sbjct: 76  HCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIINKRRRRGHRLDLVC 135

Query: 125 VTFNPRMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEKRGSEFFKYGLGYG--QEGYK 184
           V                    +NP+TNEY KLP S +   R   +  YGLG+      YK
Sbjct: 136 V--------------------LNPITNEYFKLPTSRSKGDRVPNYC-YGLGFSPTTNQYK 195

Query: 185 VVRVYF-DEELNRSVFEMLLSWEGKQPNWSCVNHAPCPI-DYDGVYSDGAVYWVG---VD 244
           + R +F  +E    +F       G    W+ V   P  + +Y GVY +G +YWVG   + 
Sbjct: 196 LARTHFTHDEFIVDIFAF-----GTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLP 255

Query: 245 TSDRECDRVFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRI 304
                     +YR D+  ++ E     L GG    + ++  +NG++Y   L++   ++  
Sbjct: 256 NGGISDYTEVIYRLDLKDEKFEKISFPLDGG---DDPYIAVYNGTLY---LTFCCEDFDY 315

Query: 305 ELQKMGGGRSSWNREIVVDMPNG------WVPRSFPCQLIVDCEDGDTFCLLNEQTFVFF 364
              KM     SW++E V+ +P          P  +  QLI  CEDG+  CL      + +
Sbjct: 316 HAWKMEED-FSWSKEFVLALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILY 375

Query: 365 DWKFGSIKPFNNN--SSLPISSIGQIHSFNFASLPTIL 377
           D    +++   N          + QI SF+F SL  IL
Sbjct: 376 DPSTQTVEILTNQDFEIKEAMWVHQIESFSFNSLHNIL 379

[Close]

BLAST of Sed0012487 vs. NCBI nr
Match: XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 8.1e-27
Identity = 109/392 (27.81%), Postives = 174/392 (44.39%), Query Frame = 0


Query: 6   PDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSF---TPSLH 65
           PD+I++VIL K+ +  L  CR VC SWN +I        K  P +LFL  ++   + +L+
Sbjct: 19  PDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTC-----KFDP-SLFLSFAYDCPSRTLY 78

Query: 66  FIDLDPKHLAGRSFDASKHFHGDW----LGLEIVDSCNSLILVLKYRTHPVDEVYVTFNP 125
            +D DP +  G +   S  FH  +      + I+++CN L+ +L  +       YV    
Sbjct: 79  CVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISKRKLGSVSYV---- 138

Query: 126 RMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEK-RGSEFFKYGLGYG--QEGYKVVRV 185
                         GI+NPMTNEY K P  ++         + YGLG+    + YK+ R 
Sbjct: 139 -------------LGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIART 198

Query: 186 YFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYD-GVYSDGAVYWVGVDTSDRECDR 245
            F  + + ++ E + ++      W+ V   P  +  D GVY  G +YWV       +   
Sbjct: 199 SFRPDESTTLVE-IFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSI 258

Query: 246 VFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGG 305
             +YR D++++++E        GG +   F   F+G++Y+ V    S N + ++ KM   
Sbjct: 259 SAIYRLDLENEKLEKISCPQYIGGHF---FFGVFDGTLYLTV----SKNNKYQVWKM-KD 318

Query: 306 RSSWNREIVVDMPNGWVPRSFPCQ--------LIVDCEDGDTFCLLNEQTFVFFDWKFGS 365
             SW +  V+  P        P Q         I  CEDG   CLL     + +D K  S
Sbjct: 319 NFSWIKAFVISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 378

Query: 366 IKPFNNNSSLPIS--SIGQIHSFNFASLPTIL 377
            +   + S        +  I +FNF SLP+IL
Sbjct: 379 AEILTDQSVKVEKHLHVHHIDAFNFNSLPSIL 378

[Close]

BLAST of Sed0012487 vs. ExPASy TrEMBL
Match: A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.4e-29
Identity = 115/400 (28.75%), Postives = 182/400 (45.50%), Query Frame = 0


Query: 4   RLPDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTS------- 63
           RLP HI+  I  K+ I  LP CR VC +WN ++  YA S   +   TLFL  +       
Sbjct: 17  RLPPHIVRAIFSKLSISNLPTCRVVCKTWNNLVLEYASSTKFLPTTTLFLSMADEISNYI 76

Query: 64  -------FTPSLHFIDLDPKHLAGRSFDASKHFHGDWLGLEIVDSCNSLILVLKYRTHPV 123
                    P +H +D+D K     S+ AS  F GDW  + IV+SCN L+ + K+    +
Sbjct: 77  PFKSTPWCNPKIHCVDIDSK----TSYVASFGFEGDWSYITIVNSCNGLLYICKFTFDSL 136

Query: 124 DEVYVTFNPRMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEKRGSEFFKYGLGYG--- 183
            E                     GI+NPMTNE+M++P  E       E   + +G+G   
Sbjct: 137 CE---------------------GILNPMTNEFMEIPQPEI------ELDVHSIGFGFSP 196

Query: 184 -QEGYKVVRVYFD--EELNRSVFEM-LLSWEGKQPNWSCVNHAPCPIDYDGVYSDGAVYW 243
             + YK+ R   +  E L +  + M + +++     W      P  + + G Y +G +YW
Sbjct: 197 RTKQYKLFRTEPEVLENLKKCHYIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYW 256

Query: 244 VGVDTSDRECDRVFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIY--INVLS-- 303
           +G    ++E + V +Y  DVD+++ME T  +L  G       ++ F   +Y  I+++   
Sbjct: 257 IG-KKLEKEGEAV-IYALDVDTEQMECT-ATLEIGPSLKNGSIKIFEERVYAIISLMDKR 316

Query: 304 YSSTNYRIELQKMGGGRSSWNREIVVDMPNGWVPRSFPCQLIVDCEDGDTFCLLNEQTF- 363
            S T+Y+IEL +M   + SW +E  +D        SF   LI   EDG+    + +  F 
Sbjct: 317 VSPTSYKIELWRM-QKKDSWIKEFSID------EESF--GLITVFEDGELLIAIKDNIFR 373

Query: 364 VFFDWKFGSIKPFNNNSS-LPISSIGQIHSFNFASLPTIL 377
           +    K   IK  N++ S + +     I+S NF     IL
Sbjct: 377 LDKSRKKIKIKTLNSSESRIKVIGCNTINSINFECFSNIL 373

[Close]

BLAST of Sed0012487 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.3e-29
Identity = 109/392 (27.81%), Postives = 175/392 (44.64%), Query Frame = 0


Query: 6   PDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSF---TPSLH 65
           PD+I++VIL K+ +  L  CR VC SWN ++        K  P +LF+  ++   + +L+
Sbjct: 19  PDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTC-----KFDP-SLFISLAYDCPSRTLY 78

Query: 66  FIDLDPKHLAGRSFDASKHFHGDW----LGLEIVDSCNSLILVLKYRTHPVDEVYVTFNP 125
            +D DP +  G +   S  FH  +      + I+++CN L+ +L  +  P    YV    
Sbjct: 79  CVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISKRKPGSVSYV---- 138

Query: 126 RMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEK-RGSEFFKYGLGYG--QEGYKVVRV 185
                         GI+NPMTNEY K P  ++         + YGLG+   ++ YK+ R 
Sbjct: 139 -------------LGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIART 198

Query: 186 YFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYD-GVYSDGAVYWVGVDTSDRECDR 245
            F  + + ++ E + ++      W+ V   P  +  D GVY +G +YWV       +   
Sbjct: 199 SFRPDESTTLVE-IFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSI 258

Query: 246 VFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGG 305
             +YR D++++ +E        GG +   F   F+G++Y+ V    S N + ++ KM   
Sbjct: 259 STIYRLDIENENLEKISCPQHLGGHF---FFGVFDGTLYLTV----SKNNKYQVWKM-KD 318

Query: 306 RSSWNREIVVDMPNGWVPRSFPCQ--------LIVDCEDGDTFCLLNEQTFVFFDWKFGS 365
             SW +  V+  P        P Q         I  CEDG   CLL     + +D K  S
Sbjct: 319 NFSWIKAFVISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 378

Query: 366 IKPFNNNSSLPIS--SIGQIHSFNFASLPTIL 377
            +   + S        +  I SFNF SLP IL
Sbjct: 379 AEILTDQSVKVEKHLHVHHIDSFNFNSLPNIL 378

[Close]

BLAST of Sed0012487 vs. ExPASy TrEMBL
Match: A0A1S3B0Q6 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 109/392 (27.81%), Postives = 175/392 (44.64%), Query Frame = 0


Query: 6   PDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSF---TPSLH 65
           PD+I++VIL K+ +  L  CR VC SWN ++        K  P +LF+  ++   + +L+
Sbjct: 19  PDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTC-----KFDP-SLFISLAYDCPSRTLY 78

Query: 66  FIDLDPKHLAGRSFDASKHFHGDW----LGLEIVDSCNSLILVLKYRTHPVDEVYVTFNP 125
            +D DP +  G +   S  FH  +      + I+++CN L+ +L  +  P    YV    
Sbjct: 79  CVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISKRKPGSVSYV---- 138

Query: 126 RMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEK-RGSEFFKYGLGYG--QEGYKVVRV 185
                         GI+NPMTNEY K P  ++         + YGLG+   ++ YK+ R 
Sbjct: 139 -------------LGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIART 198

Query: 186 YFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYD-GVYSDGAVYWVGVDTSDRECDR 245
            F  + + ++ E + ++      W+ V   P  +  D GVY +G +YWV       +   
Sbjct: 199 SFRPDESTTLVE-IFAFGSIYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSI 258

Query: 246 VFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGG 305
             +YR D++++ +E        GG +   F   F+G++Y+ V    S N + ++ KM   
Sbjct: 259 STIYRLDIENENLEKISCPQHLGGHF---FFGVFDGTLYLTV----SKNNKYQVWKM-KD 318

Query: 306 RSSWNREIVVDMPNGWVPRSFPCQ--------LIVDCEDGDTFCLLNEQTFVFFDWKFGS 365
             SW +  V+  P        P Q         I  CEDG   CLL     + +D K  S
Sbjct: 319 NFSWIKAFVISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 378

Query: 366 IKPFNNNSSLPIS--SIGQIHSFNFASLPTIL 377
            +   + S        +  I SFNF SLP IL
Sbjct: 379 AEILTDQSVKVEKHLHVHHIDSFNFNSLPNIL 378

[Close]

BLAST of Sed0012487 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-28
Identity = 113/398 (28.39%), Postives = 179/398 (44.97%), Query Frame = 0


Query: 5   LPDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSFT---PSL 64
           LP  ++++I  K+    LP CR V T+WN +I +  K    +S + LF    ++   P+L
Sbjct: 16  LPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISS-CKFDPSISISHLFFARFYSSRHPNL 75

Query: 65  HFIDLDPKHLAGRSFDASKHFHGDWLG----LEIVDSCNSLILVL----KYRTHPVDEVY 124
           H ++ DP+H  G S  AS  FH D       + I++SC+ LI ++    + R H +D V 
Sbjct: 76  HCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLIINKRRRRGHRLDLVC 135

Query: 125 VTFNPRMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEKRGSEFFKYGLGYG--QEGYK 184
           V                    +NP+TNEY KLP S +   R   +  YGLG+      YK
Sbjct: 136 V--------------------LNPITNEYFKLPTSRSKGDRVPNYC-YGLGFSPTTNQYK 195

Query: 185 VVRVYF-DEELNRSVFEMLLSWEGKQPNWSCVNHAPCPI-DYDGVYSDGAVYWVG---VD 244
           + R +F  +E    +F       G    W+ V   P  + +Y GVY +G +YWVG   + 
Sbjct: 196 LARTHFTHDEFIVDIFAF-----GTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLP 255

Query: 245 TSDRECDRVFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRI 304
                     +YR D+  ++ E     L GG    + ++  +NG++Y   L++   ++  
Sbjct: 256 NGGISDYTEVIYRLDLKDEKFEKISFPLDGG---DDPYIAVYNGTLY---LTFCCEDFDY 315

Query: 305 ELQKMGGGRSSWNREIVVDMPNG------WVPRSFPCQLIVDCEDGDTFCLLNEQTFVFF 364
              KM     SW++E V+ +P          P  +  QLI  CEDG+  CL      + +
Sbjct: 316 HAWKMEED-FSWSKEFVLALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILY 375

Query: 365 DWKFGSIKPFNNN--SSLPISSIGQIHSFNFASLPTIL 377
           D    +++   N          + QI SF+F SL  IL
Sbjct: 376 DPSTQTVEILTNQDFEIKEAMWVHQIESFSFNSLHNIL 379

[Close]

BLAST of Sed0012487 vs. ExPASy TrEMBL
Match: A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-27
Identity = 109/392 (27.81%), Postives = 174/392 (44.39%), Query Frame = 0


Query: 6   PDHIMEVILGKIGIMYLPMCRSVCTSWNVVIQNYAKSRNKMSPNTLFLCTSF---TPSLH 65
           PD+I++VIL K+ +  L  CR VC SWN +I        K  P +LFL  ++   + +L+
Sbjct: 19  PDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTC-----KFDP-SLFLSFAYDCPSRTLY 78

Query: 66  FIDLDPKHLAGRSFDASKHFHGDW----LGLEIVDSCNSLILVLKYRTHPVDEVYVTFNP 125
            +D DP +  G +   S  FH  +      + I+++CN L+ +L  +       YV    
Sbjct: 79  CVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISKRKLGSVSYV---- 138

Query: 126 RMNEYVELGMNEEYGIMNPMTNEYMKLPISEADEK-RGSEFFKYGLGYG--QEGYKVVRV 185
                         GI+NPMTNEY K P  ++         + YGLG+    + YK+ R 
Sbjct: 139 -------------LGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIART 198

Query: 186 YFDEELNRSVFEMLLSWEGKQPNWSCVNHAPCPIDYD-GVYSDGAVYWVGVDTSDRECDR 245
            F  + + ++ E + ++      W+ V   P  +  D GVY  G +YWV       +   
Sbjct: 199 SFRPDESTTLVE-IFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSI 258

Query: 246 VFVYRFDVDSKRMETTLLSLTGGGKYTEAFLRTFNGSIYINVLSYSSTNYRIELQKMGGG 305
             +YR D++++++E        GG +   F   F+G++Y+ V    S N + ++ KM   
Sbjct: 259 SAIYRLDLENEKLEKISCPQYIGGHF---FFGVFDGTLYLTV----SKNNKYQVWKM-KD 318

Query: 306 RSSWNREIVVDMPNGWVPRSFPCQ--------LIVDCEDGDTFCLLNEQTFVFFDWKFGS 365
             SW +  V+  P        P Q         I  CEDG   CLL     + +D K  S
Sbjct: 319 NFSWIKAFVISRPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKS 378

Query: 366 IKPFNNNSSLPIS--SIGQIHSFNFASLPTIL 377
            +   + S        +  I +FNF SLP+IL
Sbjct: 379 AEILTDQSVKVEKHLHVHHIDAFNFNSLPSIL 378

The following BLAST results are available for this feature:

BLAST of Sed0012487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459707.1	1.1e-28	28.75	PREDICTED: F-box protein At3g07870-like [Cucumis melo]	[more]
TYK13067.1	1.9e-28	27.81	putative F-box protein [Cucumis melo var. makuwa]	[more]
XP_008439950.1	3.3e-28	27.81	PREDICTED: putative F-box protein At3g21120 [Cucumis melo]	[more]
XP_004135796.1	1.2e-27	28.39	putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot...	[more]
XP_004134745.1	8.1e-27	27.81	F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787...	[more]

BLAST of Sed0012487 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CB99	5.4e-29	28.75	F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1	[more]
A0A5D3CM94	9.3e-29	27.81	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3B0Q6	1.6e-28	27.81	putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103484583 PE=4 SV...	[more]
A0A0A0M1M5	6.0e-28	28.39	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ...	[more]
A0A0A0KJY9	3.9e-27	27.81	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ...	[more]

BLAST of Sed0012487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 4..36 e-value: 4.5E-5 score: 23.2
IPR017451	F-box associated interaction domain	TIGRFAM	TIGR01640	TIGR01640	coord: 131..318 e-value: 5.5E-14 score: 50.0
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 4..326
None	No IPR available	PANTHER	PTHR47993:SF20	F-BOX FAMILY PROTEIN	coord: 4..326
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012487.1	Sed0012487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding