Lag0005369 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0005369
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like
Location	chr6: 15383663 .. 15384106 (-)
RNA-Seq Expression	Lag0005369
Synteny	Lag0005369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGTTCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTGAGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAGGCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGCTTAG

mRNA sequence

ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGTTCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTGAGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAGGCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGCTTAG

Coding sequence (CDS)

ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGTTCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTGAGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAGGCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGCTTAG

Protein sequence

MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

Homology

[Close]

BLAST of Lag0005369 vs. NCBI nr
Match: KAA0048071.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ96465.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 6.6e-59
Identity = 119/148 (80.41%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
           MFDSRSH  FH+SH QIPF+L + SSFSVPQE LLIV  SR  +FR PLFPS DLL RG+
Sbjct: 56  MFDSRSHRSFHSSHCQIPFILPYASSFSVPQEKLLIVPPSRTIDFRNPLFPSLDLLARGY 115

Query: 61  CDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFK 120
           CDL NSDSDS+IECEKSEDDD E  SR DST+VDRVCKVIDELFALDRNMEA+ DECG K
Sbjct: 116 CDLNNSDSDSEIECEKSEDDDRECDSRVDSTEVDRVCKVIDELFALDRNMEAVLDECGVK 175

Query: 121 LSHDLVLEVLARFKQARKPAFRFFCWAA 148
           LSHDLVLEVLARFK+ARKPAFRFFCWAA
Sbjct: 176 LSHDLVLEVLARFKRARKPAFRFFCWAA 203

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BLAST of Lag0005369 vs. NCBI nr
Match: XP_008453445.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 116/148 (78.38%), Postives = 127/148 (85.81%), Query Frame = 0


Query: 1   MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
           MFDSRSH  FH+SH QIPF+L + SSFSVPQE LL V  SR  +FR PLFPS DLL RG+
Sbjct: 56  MFDSRSHRSFHSSHCQIPFILPYASSFSVPQEKLLTVPPSRTIDFRNPLFPSLDLLARGY 115

Query: 61  CDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFK 120
           CDL NSDSDS+IECEKSEDDD E  SR DST+VDRVCKVIDELFALDRNMEA+ DECG +
Sbjct: 116 CDLNNSDSDSEIECEKSEDDDRECDSRVDSTEVDRVCKVIDELFALDRNMEAVLDECGVE 175

Query: 121 LSHDLVLEVLARFKQARKPAFRFFCWAA 148
           L+HDLVLEVLARFK+ARKPAFRFFCWAA
Sbjct: 176 LTHDLVLEVLARFKRARKPAFRFFCWAA 203

[Close]

BLAST of Lag0005369 vs. NCBI nr
Match: XP_023537572.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-56
Identity = 114/147 (77.55%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
           MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGF
Sbjct: 55  MFDSRSHGSFHSSLCQIPFILPHASSFFVPQETMLIALSSRTINFRNPPFPCFDLLVRGF 114

Query: 61  CDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKL 120
           CD NS SDS+IECE SEDDD E  SRA+S +VDRVCKV+DELFALDRNMEA+ DECG  L
Sbjct: 115 CDRNSYSDSEIECEISEDDDRESESRANSIEVDRVCKVLDELFALDRNMEAVLDECGIIL 174

Query: 121 SHDLVLEVLARFKQARKPAFRFFCWAA 148
           SHDLVL VL RFKQARKPAFRFFCWAA
Sbjct: 175 SHDLVLNVLERFKQARKPAFRFFCWAA 201

[Close]

BLAST of Lag0005369 vs. NCBI nr
Match: XP_022937612.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 8.9e-56
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
           MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGF
Sbjct: 55  MFDSRSHGSFHSSLCQIPFILPHASSFFVPQETMLIATSSRTINFRNPPFPCFDLLVRGF 114

Query: 61  CDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKL 120
           CD NS SDS+IECE SEDDD E  SRA+  +VDRVCKV+DELFALDRNMEA+ DECG  L
Sbjct: 115 CDRNSHSDSEIECEISEDDDRESDSRANPIEVDRVCKVLDELFALDRNMEAVLDECGVIL 174

Query: 121 SHDLVLEVLARFKQARKPAFRFFCWAA 148
           SHDLVL VL RFKQARKPAFRFFCWAA
Sbjct: 175 SHDLVLNVLERFKQARKPAFRFFCWAA 201

[Close]

BLAST of Lag0005369 vs. NCBI nr
Match: XP_022965638.1 (pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 113/147 (76.87%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGF 60
           MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGF
Sbjct: 55  MFDSRSHGSFHSSLCQIPFILPHASSFFVPQETMLIAMSSRTINFRNPPFPCFDLLVRGF 114

Query: 61  CDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNMEAIFDECGFKL 120
           CD NSDSDS+IE E  EDDD E  SRA+S +VDRVCKV+DELFALDRNMEA+ DECG  L
Sbjct: 115 CDRNSDSDSEIEREIREDDDRESESRANSIEVDRVCKVLDELFALDRNMEAVLDECGIIL 174

Query: 121 SHDLVLEVLARFKQARKPAFRFFCWAA 148
           SHDLVL VL RFKQARKPAFRFFCWAA
Sbjct: 175 SHDLVLNVLERFKQARKPAFRFFCWAA 201

[Close]

BLAST of Lag0005369 vs. ExPASy Swiss-Prot
Match: Q9LZP3 (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 59  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDE 118
           G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE
Sbjct: 95  GSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDE 154

Query: 119 CGFKLSHDLVLEVLARFKQARKPAFRFFCWAA 148
               LSHDL++EVL RF+ ARKPAFRFFCWAA
Sbjct: 155 MKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 186

[Close]

BLAST of Lag0005369 vs. ExPASy Swiss-Prot
Match: Q3EAF8 (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 59  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDE 118
           G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE
Sbjct: 95  GSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDE 154

Query: 119 CGFKLSHDLVLEVLARFKQARKPAFRFFCWAA 148
               LSHDL++EVL RF+ ARKPAFRFFCWAA
Sbjct: 155 MKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 186

[Close]

BLAST of Lag0005369 vs. ExPASy Swiss-Prot
Match: Q9LEQ7 (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-20
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 59  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDE 118
           G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE
Sbjct: 94  GSSNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDE 153

Query: 119 CGFKLSHDLVLEVLARFKQARKPAFRFFCWAA 148
               LSHDL++EVL RF+ ARKPAFRFFCWAA
Sbjct: 154 MKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 185

The following BLAST results are available for this feature:

BLAST of Lag0005369 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048071.1	6.6e-59	80.41	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ96465...	[more]
XP_008453445.1	1.6e-57	78.38	PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-...	[more]
XP_023537572.1	4.0e-56	77.55	pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucur...	[more]
XP_022937612.1	8.9e-56	76.87	pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucur...	[more]
XP_022965638.1	2.0e-55	76.87	pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucur...	[more]

BLAST of Lag0005369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZP3	1.6e-20	56.52	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]
Q3EAF8	1.6e-20	56.52	Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop...	[more]
Q9LEQ7	1.6e-20	56.52	Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 3..147
None	No IPR available	PANTHER	PTHR47942:SF48	OS05G0355200 PROTEIN	coord: 3..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0005369.1	Lag0005369.1	mRNA