Lag0026198 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0026198
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr10: 32059781 .. 32060149 (+)
RNA-Seq ExpressionLag0026198
SyntenyLag0026198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCAGCTAGCGAATGAGTTGAAGGCACGACCTCAAGGAAAACTTCCTGCGAATACTGAGCACCCTAGAAGGGTAGGTAACGAGCAGGTACAGGCAGTGCCTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAGAAAGCCTAGTAAAACCCAGGATGTAGAGAAAAATAGTGATAAAAAGGTTGTTGTTGAAAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAATAATGCTGGAGCATCTGCCTCTGTTCCAGATGTAGAACGACCTTATGTACCGTCCCTACCTTATGTACTACCTCTACCTTTTCCACAAAGACAGAAGCCTACGAATCAGGATGGTCAATTTAAAAAAAAATAG

mRNA sequence

ATGGGCCAGCTAGCGAATGAGTTGAAGGCACGACCTCAAGGAAAACTTCCTGCGAATACTGAGCACCCTAGAAGGGTAGGTAACGAGCAGGTACAGGCAGTGCCTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAGAAAGCCTAGTAAAACCCAGGATGTAGAGAAAAATAGTGATAAAAAGGTTGTTGTTGAAAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAATAATGCTGGAGCATCTGCCTCTGTTCCAGATGTAGAACGACCTTATGTACCGTCCCTACCTTATGTACTACCTCTACCTTTTCCACAAAGACAGAAGCCTACGAATCAGGATGGTCAATTTAAAAAAAAATAG

Coding sequence (CDS)

ATGGGCCAGCTAGCGAATGAGTTGAAGGCACGACCTCAAGGAAAACTTCCTGCGAATACTGAGCACCCTAGAAGGGTAGGTAACGAGCAGGTACAGGCAGTGCCTCTAAGGAGTGGTAAGCCACTAGAAGAGAGAAGAAAGCCTAGTAAAACCCAGGATGTAGAGAAAAATAGTGATAAAAAGGTTGTTGTTGAAAAAGAGTTGGAGTCTGGTAAAAATGATGGAGACAGCAATAATAATGCTGGAGCATCTGCCTCTGTTCCAGATGTAGAACGACCTTATGTACCGTCCCTACCTTATGTACTACCTCTACCTTTTCCACAAAGACAGAAGCCTACGAATCAGGATGGTCAATTTAAAAAAAAATAG

Protein sequence

MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKPSKTQDVEKNSDKKVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPTNQDGQFKKK
Homology
BLAST of Lag0026198 vs. NCBI nr
Match: XP_024018055.1 (uncharacterized protein LOC112090603 [Morus notabilis])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 57/132 (43.18%), Postives = 71/132 (53.79%), Query Frame = 0

Query: 1   MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKP--SKTQDVE-KN 60
           +GQ+AN LK RPQG LP+NTE PRR G E  +A+ LR GK LE R KP  + T+    + 
Sbjct: 199 VGQIANSLKNRPQGSLPSNTEDPRRDGKEHCKAITLRCGKELESRAKPLAAHTEPTSIQG 258

Query: 61  SDKKVVVEKELESGKN-DGDSNNNA-------GASASVPDVERPYVPSLPYVLPLPFPQR 120
            +KK + +KE    K  D D  N A        A+ S     RP         PLPFPQR
Sbjct: 259 GEKKTLPQKEQPRSKQLDSDVQNAAALPQHSEAANTSNTSGNRP---------PLPFPQR 318

Query: 121 QKPTNQDGQFKK 122
            +   QDGQF+K
Sbjct: 319 FQKQQQDGQFRK 321

BLAST of Lag0026198 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-10
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 0

Query: 1   MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERR-------KPSKTQD 60
           +G LANELKARPQG LP++TE+PRR G EQ +++ LRSGK L+          +P+  Q+
Sbjct: 240 LGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLKNSEEEIKGSGEPTSIQN 299

Query: 61  VEKNSDKKVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPT 120
            EK S K    ++  ++   D  S   + +  S P   +P         PLPFPQR +  
Sbjct: 300 DEKLSKK--TAQEIADTRPVDTASGQQSDSQQSAPVCTKP---------PLPFPQRFRKQ 356

Query: 121 NQDGQFKK 122
            QDGQFKK
Sbjct: 360 QQDGQFKK 356

BLAST of Lag0026198 vs. NCBI nr
Match: XP_030505184.1 (uncharacterized protein LOC115720166 [Cannabis sativa])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-09
Identity = 53/128 (41.41%), Postives = 68/128 (53.12%), Query Frame = 0

Query: 1   MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERR-------KPSKTQD 60
           +G LANELKARPQG LP++TE+PRR G EQ +++ LRSGK L+          +P+  Q 
Sbjct: 409 LGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLKNSEEEIKGSGEPTSIQI 468

Query: 61  VEKNSDKKVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPT 120
            EK S K      +           +N+  SA V    +P         PLPFPQR +  
Sbjct: 469 DEKLSKKTAQEIADTRRVDTATGQQSNSQQSAPVCSSSKP---------PLPFPQRFQKQ 527

Query: 121 NQDGQFKK 122
            QDGQFKK
Sbjct: 529 QQDGQFKK 527

BLAST of Lag0026198 vs. NCBI nr
Match: XP_030494874.1 (uncharacterized protein LOC115710657 [Cannabis sativa])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 0

Query: 1   MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKPSKTQDVEKNSDK 60
           +G LANELKARPQG LP++TE+PRR G EQ  A+ LRSGK L    K S+ +        
Sbjct: 197 LGHLANELKARPQGSLPSDTENPRRDGKEQCNAIQLRSGKHL----KNSEEEIKGSGEPT 256

Query: 61  KVVVEKEL--ESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPTNQDGQ 120
            + ++K+L  ++ +   D++     +     +E   V S P   PLPFPQR +   QDGQ
Sbjct: 257 SIQIDKKLSNKTAQEFADTSPVDTKNGRQLTIESAPVCSSPKP-PLPFPQRFQKQQQDGQ 314

Query: 121 FKK 122
           F+K
Sbjct: 317 FRK 314

BLAST of Lag0026198 vs. NCBI nr
Match: XP_030504828.1 (uncharacterized protein LOC115719782 [Cannabis sativa])

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-08
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 0

Query: 1   MGQLANELKARPQGKLPANTEHPRRVGNEQVQAVPLRSGKPLEERRKPSKTQDVEKNSDK 60
           +G LANELKARPQG LP++TE+PRR G EQ +++ LRSGK L+     +  ++++ + + 
Sbjct: 22  LGHLANELKARPQGSLPSDTENPRRDGKEQCKSIHLRSGKHLK-----NSEEEIKGSGEP 81

Query: 61  KVVVEKELESGKNDGDSNNNAGASASVPDVERPYVPSLPYVLPLPFPQRQKPTNQDGQFK 120
             +   E  S K  G S     +S       +P         PLPFPQR +   QDGQFK
Sbjct: 82  TSIQIDEKLSKKRPGTSIQTVCSS------PKP---------PLPFPQRFQKQQQDGQFK 122

Query: 121 K 122
           +
Sbjct: 142 R 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024018055.12.1e-1043.18uncharacterized protein LOC112090603 [Morus notabilis][more]
XP_030509265.13.6e-1041.41uncharacterized protein LOC115723943 [Cannabis sativa][more]
XP_030505184.12.3e-0941.41uncharacterized protein LOC115720166 [Cannabis sativa][more]
XP_030494874.11.5e-0841.46uncharacterized protein LOC115710657 [Cannabis sativa][more]
XP_030504828.19.8e-0839.67uncharacterized protein LOC115719782 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0026198.1Lag0026198.1mRNA