Lag0032580 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0032580
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 34924451 .. 34924768 (-)
RNA-Seq ExpressionLag0032580
SyntenyLag0032580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAACGGAAATGTTCGAAAATGAGGCGTATGGAGTTGGAGTTGGGGACATTCGCCTGGGTTAGAGATTGCCCGATGGCAGTGTCGAAATCAAAGGACTCACTTGGTAATTTTTTGGAGAAGGAGGTAATCTTCTTTCAGGTCTTGGAAAATATGAAAGGAAGGTTCGCCTTGGTTTCTGTCGAGCCCTTTCGAGCACGAAAAAATTTGATTTTCATCCCAACAGGTAATAAATTAAAAGGATGGGGAGCTCTGGAGGCAGCCATGACGGATCCTACCCCCTGTGGTGCCAGCGACTCGGAAAAGAAATCATGA

mRNA sequence

ATGGAGGAACGGAAATGTTCGAAAATGAGGCGTATGGAGTTGGAGTTGGGGACATTCGCCTGGGTTAGAGATTGCCCGATGGCAGTGTCGAAATCAAAGGACTCACTTGGTAATTTTTTGGAGAAGGAGGTAATCTTCTTTCAGGTCTTGGAAAATATGAAAGGAAGGTTCGCCTTGGTTTCTGTCGAGCCCTTTCGAGCACGAAAAAATTTGATTTTCATCCCAACAGGTAATAAATTAAAAGGATGGGGAGCTCTGGAGGCAGCCATGACGGATCCTACCCCCTGTGGTGCCAGCGACTCGGAAAAGAAATCATGA

Coding sequence (CDS)

ATGGAGGAACGGAAATGTTCGAAAATGAGGCGTATGGAGTTGGAGTTGGGGACATTCGCCTGGGTTAGAGATTGCCCGATGGCAGTGTCGAAATCAAAGGACTCACTTGGTAATTTTTTGGAGAAGGAGGTAATCTTCTTTCAGGTCTTGGAAAATATGAAAGGAAGGTTCGCCTTGGTTTCTGTCGAGCCCTTTCGAGCACGAAAAAATTTGATTTTCATCCCAACAGGTAATAAATTAAAAGGATGGGGAGCTCTGGAGGCAGCCATGACGGATCCTACCCCCTGTGGTGCCAGCGACTCGGAAAAGAAATCATGA

Protein sequence

MEERKCSKMRRMELELGTFAWVRDCPMAVSKSKDSLGNFLEKEVIFFQVLENMKGRFALVSVEPFRARKNLIFIPTGNKLKGWGALEAAMTDPTPCGASDSEKKS
Homology
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BLAST of Lag0032580 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 8.7e-13
Identity = 44/106 (41.51%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 1   MEERKCSKMRRMELELGTFAWVRDCPMAVSKSKDSL---GNFLEKEVIFFQVLENMKGRF 60
           +EER      ++EL+ GT AWVRDC +  + + +S+      LE  +IFFQVLEN KGRF
Sbjct: 24  IEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVFWQRRLEFAIIFFQVLENEKGRF 83

Query: 61  ALVSVEPFRARKNLIFIPTGNKLKGWGALEAAMTDPTPCGASDSEK 104
           A++S+E F+ RK  IFIP G++  GW +L   ++   P   + ++K
Sbjct: 84  AILSLESFKERKTRIFIPEGSRGSGWRSLAGEISALLPWSGTINQK 129

The following BLAST results are available for this feature:
BLAST of Lag0032580 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14183.18.7e-1341.51hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa][more]
BLAST of Lag0032580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0032580.1Lag0032580.1mRNA