ClCG10G018550 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G018550
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Ubiquitin-conjugating enzyme E2 variant 1C
Location	CG_Chr10: 33578928 .. 33584358 (-)
RNA-Seq Expression	ClCG10G018550
Synteny	ClCG10G018550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAATAATAATTACTTTTCGTTGCCCCTTTTTCTAACCTATCGATTCCACAAGCCTTCAAGTTTTCCTCTTTATTCCCTTGGTTCTGTCCTTTATCTTCTTAGATTCTTCATCTTCAAGTGTTCCATTCCCTTCACTCTTCGATCAGATCCTTGTTAGCTGATCGCAATTAACCATTTTTGATTCATCTATGACGCTCGGTTCAGGAGGCTCGAGTGTTGTTGGTCAGTCTTTTTTATCTGTTCGTCGAAATTTTGATTGATCTCATGCTTTCTCTTTTATATCCTTCAAATTTTTGGCTGATTTGACTATTTCATCGGTATTTTTGTTAATCATCGATGGGTTTGTATTAATTGTCCAATACTTCTATATTTATTTGACCCCTTTGCTAATATCTGTGCGTTGCATTCTCCGCCGTTGATGTACTTTCTTCTGTTACTCCGATTTTCTGTGTGTGTTCTATGAGATTCGATTTGCTCTAAAATGTAAATGCTACTTGATTTTGTAGGTTAGATTAATTTTGGTATGAAATTTATGGTTGGACCTTCATGATTGAACTCTGGTCACTTTATTGTGCATGATCTCTGTGGCTTATTTTGGATTGATATCTGCTAATCGTTTTTTTTTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATGTGTTCTATAAAATATCAACTCTGACACGATCCAGATTGATGAATCACAGTTTTCTTTGTTGTATACATACTTGTATCTCTCAGCTGTTTTCATTACATGTATTCTCAGGGTTCTTCTAATGATACGACTTTTATTTGAAGCCTGTAAGGTCTTCGTGCTACATCATCTTATACTTCGGCTAGGTTTTTATTTTTTATTAATTTTTTTAATCCATTTTGTAATCATGAATTCAAGGTGAACTGGTTTATTAATCATCTCAAACATCTGATACTTAAACTAGGAGGAGAATGGTGATATCATTCATACTGTACTTTCAAGGACTTTTGAGGCTCAGGATGGAGATTTGCAAATCTTGTCTGTGCTAATAATGATGATATTAAGAATGACACTTAGAATCTTTATTTATGTTTAGTAATACTTGTTAATGCAGTTTTATGGTTTTTATTGATGCTTTTGTATTTAGCTTGATGCTGATCATTGTACTACTTTGAGGTTTGTGCCTCACCTCTTTTGAAGAAAAAGCCTCGAGACTGCTTTTTGCTTCTTTAACATTGTATGGATATCCCTTAAGCTTTAGACTTGGAAAGATTACCTCAAGCTCTTTTTCTTTCGAGGCTGAACTATAGGATTTGCAAATATTAGAACATTCTCATATGCTGATATATAAGTGTTCACTGAAAATTATGCTATTTTCTTAAAATGAAAATAGTTAATTTACACATGCATTAGGATGTTAATTGTTTTTCTGTGAATTCTTCTTTTAGGCTGATATGTGGCAGGGAGATTATCCTAGTTTCTTTATCCTTAATTTTTTTGGACAATGATGTTTTCAATGGTTTCCTCAACTGTCTCCTAGGCATCTTCAGTGAGAGGCAATATGCGTAGAATCTTCATTGCTTGAGTGATCATGAGGCATTGGGGTGCACAGAATAAGTTGCACATTTTGGGTTGACATTTGCACCCGTAAATGTGAGTTTGTGACAACCAATGTGAAAGCTTTACTCAAGAGACTTCAGTAGTCAGCCCTTATTTTCCCTCTTCGCAAACAAGGCACATGCTTTCTGTATATTTTGACTTCTGCCTTGTCTGTTATTCTCCATCTTGTACTGAGCTCATCCTTAGTCCTAAAGTTATAGGGTCTCCCCCACCCCACAATTTCCTAATACTACATCGTTTTCCTTTTCTTTTCCCATGTTTTTTATTTTTACCTTCTCCTTTCTAATTCAATGCTTCTTCTTCCTTCTTCACTTCTATCTTACTTATTATTTATATTTAGTGTTGAACTTTCTACTGTTAGGATAATAATTCATTCCCTTCTTGCTTTTCTTTTCTTTCTATCTAAAGTATCTCTCCCACTCACATTGTCAGCAACTTATTGAAATTTCACTCTTTTTCTTTGGGCTAGTTAACTATACTCGACAGGACAGCCTTCTACCAGATATTGTACTCTTATTCCTAGTCTATTTACTGGCTTGTTTTGACCGTTGAGCCTTAGCTCACCATGGTTCATCCCAGGATTAATCATAAATTGGCATAGAGACCGATGAACCATGGTTATTAAAAAGGTTGATATTCAATTCTCTAATATTATCCATCATCGTTTCTTTTACAAATTATTGTCATAGATATTAATTAATTAATCAATTAATTTCATGCATTCCTCAATTTACTGGGGTTGGTCCAGTTTGTGCCATTTGCGTGCCTCTTGCTTTCATGTTAATCTTGAATTTTTCTGTCTTAGGGTGCATCTAGCACTGTGATAATACTGCTGTGAATGAACATCTGACAGCCGAGTGGTTCTTTCATTTGAAAGATTAGGAATTTTGAAAAACACAAAACATGGCTCCATTCTGTCTGTGTTGGGTTGTGCTTCTGAGGTGTTTTTGTTTTTCCTAATTGGGTATAACTGCTTAATCACAATGTTAATCCAAGTGCAATGTTAAATGTGCATTGATTTATGTGTTGTTGGTCAATAAGAAATCTCACCTGATTTTATTTTGTATAAACATATGAAAATCTGTTCCTTAATTTGATTGATAGAGAGTACAGGCACGATTTTCTTGGTTTGTAGAACTTCACAACAAGAAACTTGATATGTAAACATGGTGGTGCTTGATACAGATGATCAATTAGAGCTTCAATATTGCAATATATCTATTCTTTGGATCAAACCTTAATTTGAGCAGAGTCAAAGTTCAAGGGTCTAAGACTAAGACTAAGGTGTCTGAAGGGAGTTGGATCTGGGTGGAAACTATAGATGTAACCAGATGCATATGAAGTATGGTTTTAGTTTGAACATATATGTAATTTGGGACTTGATTGTTTGAGTTTACATCCATGCCTAGGAATTTCCAGACTATTACTGTCAATCTCAGAATCTTATGAAGGTAGGTCAGTGGTAACTAAGCTGAACAAATTGCGAGAGAATTTTGATGTGCTGTTTATGATGTCTTTTGAGATAGGCACAAGCTAACTTAGTGAGCAGTTGCTTCCTTAAACTTTGCGGCTTATTTTGTTGGGCTGTTAATTTTTGGCATATGCTGAAATGCCAGGCACTTGGTTGGATGAGGGCTGTCTAATGGGAATATTAGCATAATCTTTGCCTTAAGGTCAAGGTGATTTCTAAGGCGGCAACGGCAAGTAATATTAACTGTTATCTGCTGGCGTCTTGGTGAGTTAGTGGATATATGGAATAGTTGAAGGTTATCAGAATGGTTAGAGAGATTAGTTCATAGGAAGTGGTTATAAAAATAAATGGAGCGGAAGCCGGATGGGCAGTGCTGATGATGATTACTCCAACAGCTTGGAATTAGGAGAACAGGGGCAGGGCTGTTTTCTATCTTTATTTTAGTACAAATATCAATTCGGTCGAGCATTTGACACTGGAGATGGTTTTTAGAGCACCGTAATGAACATAGGAGAAATGTCTGAAGGGACATTCTCGAACATTTTAATACAATTATCAATATGATTATACTTCTCATTGAATAAAATTATTTGATGTCGAATGATTTTAAACCAGTCGGTTGGGTCCGCTCTTTTTCTATATTGTTCTTTGAGGGGGCAAATCGATTAAATAATTTGTACATTGCAGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAGTGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATGTAATGGCTTCCGCTCTCTTTTCAGGACTATTAGTTTAATGGCTTGCTCGTGAAGAAAATATGAAAATTTTATATTCTTACTGAAAAAAATTATAATTCATTGAGAATCGTTGGTAACTACAAGAACCATTCCTGCTCTTTCCCAATGCAATTAGCATAACACGTCTTTCTTCTTGAAGTTTGGAGAAGAGCACTTATTTTTAAAAGCTTTGTATGAACAACTTGAGGTGGCAGACTCTGTAAATGGTTGAACAATTCCTATTTTATGGCGAAAGGTGTCTTAAGCAGAAAATTGGCAGTCTACTTTATTTTACAATTCCTATTTTATGGCGACACATACAGTGCATTAAAAATTCATCATGCTTCTTTTCTCCTTGCAGACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTATCTCTGATTCCATTTACATAGTTGACAATATGTGAATCTCTCAGTACTTTATATTAAACTAAAAGTTGATATTTGAAAGAAAGAACAAAAGATAAGTGTATTATAAATATATAATCGTATTTTAAACTTGTGTTTTCTGAATTTTTGCTCTGATAGCAGCAAGTTCACCAACATGTTGTCTCTTGCCTACCTAGAAATTATTATTTTAACTGATCTTGACCTTCTCTATGTTATGTTACATAATGATTGATTTCCAACAGGTTGAGTCAAAGAAATTTGGACTTCTTGCTAATTGGCAGCGAGAGTACACCATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAGTTCCAAGATCATGTAACACATGATCATATGCTTGTGCAATATGCAAATATAGTTTGCAATGCTGTGTAATCCTGTGGAAGTTTAGCACATTCCAGGAAAGAACCAAAATCTTCATGATGATTTGCATTGCTTCATCGTTGATCAATAGTCTTTTCCTTGTCAATCTGTGTTAAGGGATGGTCTTTTAATGATGGGAATGTGTCGAATACAAATTTACCCAATAGTATTATCTAATTTGAGCGTTGGTTGTTTGATGCAA

mRNA sequence

CGAAATAATAATTACTTTTCGTTGCCCCTTTTTCTAACCTATCGATTCCACAAGCCTTCAAGTTTTCCTCTTTATTCCCTTGGTTCTGTCCTTTATCTTCTTAGATTCTTCATCTTCAAGTGTTCCATTCCCTTCACTCTTCGATCAGATCCTTGTTAGCTGATCGCAATTAACCATTTTTGATTCATCTATGACGCTCGGTTCAGGAGGCTCGAGTGTTGTTGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAGTGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGCATAACACGTCTTTCTTCTTGAAGTTTGGAGAAGAGCACTTATTTTTAAAAGCTTTGTATGAACAACTTGAGGTGGCAGACTCTACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAGAAATTTGGACTTCTTGCTAATTGGCAGCGAGAGTACACCATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAGTTCCAAGATCATGTAACACATGATCATATGCTTGTGCAATATGCAAATATAGTTTGCAATGCTGTGTAATCCTGTGGAAGTTTAGCACATTCCAGGAAAGAACCAAAATCTTCATGATGATTTGCATTGCTTCATCGTTGATCAATAGTCTTTTCCTTGTCAATCTGTGTTAAGGGATGGTCTTTTAATGATGGGAATGTGTCGAATACAAATTTACCCAATAGTATTATCTAATTTGAGCGTTGGTTGTTTGATGCAA

Coding sequence (CDS)

ATGACGCTCGGTTCAGGAGGCTCGAGTGTTGTTGATTGTAGAGTTGAATATGACGATGATGTCTCGCCAATGGCAGAACTTAAGCATCTTCTAAGTGTTTGCTTTCCATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGCGATGCATAACACGTCTTTCTTCTTGAAGTTTGGAGAAGAGCACTTATTTTTAAAAGCTTTGTATGAACAACTTGAGGTGGCAGACTCTACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAGAAATTTGGACTTCTTGCTAATTGGCAGCGAGAGTACACCATGGAGGATATACTCACACAGCTGAAAAAGGAAATGGCAGCCCCACATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAG

Protein sequence

MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF

Homology

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BLAST of ClCG10G018550 vs. NCBI nr
Match: KAA0043837.1 (ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo var. makuwa] >TYK25296.1 ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.0e-66
Identity = 128/161 (79.50%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 11  VDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEE 70
           +DC VEYD DVSPMAELKHLLSVCFPSQF GTSGCWRNLNVEKRALAM            
Sbjct: 12  MDCGVEYDVDVSPMAELKHLLSVCFPSQFPGTSGCWRNLNVEKRALAM------------ 71

Query: 71  HLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVE 130
                           TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVE
Sbjct: 72  ----------------TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVE 131

Query: 131 SKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 172
           SKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
Sbjct: 132 SKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 144

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BLAST of ClCG10G018550 vs. NCBI nr
Match: KAG7028134.1 (Ubiquitin-conjugating enzyme E2 variant 1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 105/174 (60.34%), Postives = 122/174 (70.11%), Query Frame = 0


Query: 1   MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHN 60
           MTLGSGGSSVV             A  K LLS+  P  F         L   ++ +    
Sbjct: 1   MTLGSGGSSVV-------------ASFKCLLSITVPRNF----RLLEELERGEKGIGDGT 60

Query: 61  TSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMT 120
            S+ +  G++ +++++    +    +TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMT
Sbjct: 61  VSYGMDDGDD-IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMT 120

Query: 121 CVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           CVNHETGVVE KKFGLLANWQREY+MEDILTQLKKEMAAP NRKLVQPPEGTYF
Sbjct: 121 CVNHETGVVEPKKFGLLANWQREYSMEDILTQLKKEMAAPQNRKLVQPPEGTYF 156

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BLAST of ClCG10G018550 vs. NCBI nr
Match: KAA3472019.1 (ubiquitin-conjugating enzyme E2 variant 1D [Gossypium australe])

HSP 1 Score: 198.0 bits (502), Expect = 6.8e-47
Identity = 96/135 (71.11%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 40  LGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLF 99
           LGTS CWR+L+VEK+   M  ++  +++  E +F  A          TVHEGRIYQLKLF
Sbjct: 4   LGTSDCWRSLSVEKKVSEMVLSA--MEWMMEMIFTCA---HGPAPLLTVHEGRIYQLKLF 63

Query: 100 CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAA 159
           CDKDYP+KPPSVRFHSR+NMTCVNH+TG+VESKKFG+LANW+REYTMEDILTQLKKEMAA
Sbjct: 64  CDKDYPEKPPSVRFHSRINMTCVNHDTGLVESKKFGILANWRREYTMEDILTQLKKEMAA 123

Query: 160 PHNRKLVQPPEGTYF 175
            HNRKLVQPPEGTYF
Sbjct: 124 SHNRKLVQPPEGTYF 133

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BLAST of ClCG10G018550 vs. NCBI nr
Match: KAB2631790.1 (ubiquitin-conjugating enzyme E2 variant 1D [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-46
Identity = 106/170 (62.35%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 1   MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHN 60
           MTLGSGGSSVV     ++                       TS CWRNLN EK+ L M  
Sbjct: 1   MTLGSGGSSVVVFLQSHE-----------------------TSDCWRNLNEEKKVLGMAL 60

Query: 61  TSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMT 120
           ++           +  L   L     TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMT
Sbjct: 61  SAMGWMTEMTSTCVLGLAPLL-----TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMT 120

Query: 121 CVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPE 171
           CVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEM APHNRKLVQPPE
Sbjct: 121 CVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMGAPHNRKLVQPPE 142

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BLAST of ClCG10G018550 vs. NCBI nr
Match: RDX79999.1 (Ubiquitin-conjugating enzyme E2 variant 1D, partial [Mucuna pruriens])

HSP 1 Score: 195.3 bits (495), Expect = 4.4e-46
Identity = 101/175 (57.71%), Postives = 121/175 (69.14%), Query Frame = 0


Query: 1   MTLGSGGSSVVDCRVEYDDDVSPMAELKH-LLSVCFPSQFLGTSGCWRNLNVEKRALAMH 60
           MTLGSGGSSVV             +   H LL   +  +          L   ++ +   
Sbjct: 1   MTLGSGGSSVVG-----------QSLTNHPLLLYAYQPRLPRNFRLLEELERGEKGIGDG 60

Query: 61  NTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNM 120
             S+ +  G++ +++++    +    +TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+N+
Sbjct: 61  TVSYGMDDGDD-IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINI 120

Query: 121 TCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           TCVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 121 TCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 163

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BLAST of ClCG10G018550 vs. ExPASy Swiss-Prot
Match: Q9SJ44 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 79/89 (88.76%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YT
Sbjct: 57  NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYT 116

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           MEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct: 117 MEDILTQLKKEMAASHNRKLVQPPEGTFF 145

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BLAST of ClCG10G018550 vs. ExPASy Swiss-Prot
Match: Q9SVD7 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYT
Sbjct: 58  NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYT 117

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           MEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 118 MEDILVQLKKEMSTSHNRKLVQPPEGTCF 146

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BLAST of ClCG10G018550 vs. ExPASy Swiss-Prot
Match: Q93YP0 (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.1e-31
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +T +EG+I+QLKLFC K+YP+ PP+VRF +R+NM CVN ETGVVE   F +L NW+REYT
Sbjct: 56  NTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYT 115

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEG 172
           MEDIL +LKKEM   HNRKL QPPEG
Sbjct: 116 MEDILVKLKKEMMTSHNRKLAQPPEG 141

[Close]

BLAST of ClCG10G018550 vs. ExPASy Swiss-Prot
Match: Q9CAB6 (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-28
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +T +EG+I+QLKLFC KDYP+ PP+VRF SR+NM CVN E GVV+   F +L+NW+RE+T
Sbjct: 56  NTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFT 115

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEG 172
           MED+L QLKKEM +  NRKL QP EG
Sbjct: 116 MEDLLIQLKKEMMSSQNRKLAQPLEG 141

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BLAST of ClCG10G018550 vs. ExPASy Swiss-Prot
Match: Q54D06 (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 44/89 (49.44%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +T  + R Y LKL+CDKDYP+KPP+VRF +++N+ CVN + GVV+ K   +L+NW  +  
Sbjct: 50  NTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNR 109

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           +++IL++L++EM++  N+KLVQPPEG  F
Sbjct: 110 IQNILSELRREMSSSSNKKLVQPPEGANF 138

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BLAST of ClCG10G018550 vs. ExPASy TrEMBL
Match: A0A5A7TPU5 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004320 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.4e-66
Identity = 128/161 (79.50%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 11  VDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHNTSFFLKFGEE 70
           +DC VEYD DVSPMAELKHLLSVCFPSQF GTSGCWRNLNVEKRALAM            
Sbjct: 12  MDCGVEYDVDVSPMAELKHLLSVCFPSQFPGTSGCWRNLNVEKRALAM------------ 71

Query: 71  HLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVE 130
                           TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVE
Sbjct: 72  ----------------TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVE 131

Query: 131 SKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 172
           SKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG
Sbjct: 132 SKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 144

[Close]

BLAST of ClCG10G018550 vs. ExPASy TrEMBL
Match: A0A5B6VRJ3 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Gossypium australe OX=47621 GN=ube2v PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.3e-47
Identity = 96/135 (71.11%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 40  LGTSGCWRNLNVEKRALAMHNTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLF 99
           LGTS CWR+L+VEK+   M  ++  +++  E +F  A          TVHEGRIYQLKLF
Sbjct: 4   LGTSDCWRSLSVEKKVSEMVLSA--MEWMMEMIFTCA---HGPAPLLTVHEGRIYQLKLF 63

Query: 100 CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAA 159
           CDKDYP+KPPSVRFHSR+NMTCVNH+TG+VESKKFG+LANW+REYTMEDILTQLKKEMAA
Sbjct: 64  CDKDYPEKPPSVRFHSRINMTCVNHDTGLVESKKFGILANWRREYTMEDILTQLKKEMAA 123

Query: 160 PHNRKLVQPPEGTYF 175
            HNRKLVQPPEGTYF
Sbjct: 124 SHNRKLVQPPEGTYF 133

[Close]

BLAST of ClCG10G018550 vs. ExPASy TrEMBL
Match: A0A5N5I2A9 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_009309 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 7.4e-47
Identity = 106/170 (62.35%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 1   MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHN 60
           MTLGSGGSSVV     ++                       TS CWRNLN EK+ L M  
Sbjct: 1   MTLGSGGSSVVVFLQSHE-----------------------TSDCWRNLNEEKKVLGMAL 60

Query: 61  TSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMT 120
           ++           +  L   L     TVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMT
Sbjct: 61  SAMGWMTEMTSTCVLGLAPLL-----TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMT 120

Query: 121 CVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPE 171
           CVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEM APHNRKLVQPPE
Sbjct: 121 CVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMGAPHNRKLVQPPE 142

[Close]

BLAST of ClCG10G018550 vs. ExPASy TrEMBL
Match: A0A371FNV5 (Ubiquitin-conjugating enzyme E2 variant 1D (Fragment) OS=Mucuna pruriens OX=157652 GN=UEV1D PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.1e-46
Identity = 101/175 (57.71%), Postives = 121/175 (69.14%), Query Frame = 0


Query: 1   MTLGSGGSSVVDCRVEYDDDVSPMAELKH-LLSVCFPSQFLGTSGCWRNLNVEKRALAMH 60
           MTLGSGGSSVV             +   H LL   +  +          L   ++ +   
Sbjct: 1   MTLGSGGSSVVG-----------QSLTNHPLLLYAYQPRLPRNFRLLEELERGEKGIGDG 60

Query: 61  NTSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNM 120
             S+ +  G++ +++++    +    +TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+N+
Sbjct: 61  TVSYGMDDGDD-IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINI 120

Query: 121 TCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           TCVNHETGVVE KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 121 TCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 163

[Close]

BLAST of ClCG10G018550 vs. ExPASy TrEMBL
Match: A0A2P2L1J3 (Ubiquitin-conjugating family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.7e-46
Identity = 101/174 (58.05%), Postives = 121/174 (69.54%), Query Frame = 0


Query: 1   MTLGSGGSSVVDCRVEYDDDVSPMAELKHLLSVCFPSQFLGTSGCWRNLNVEKRALAMHN 60
           MTLGSGGSSVV  R     +   + EL+H                       ++ +    
Sbjct: 1   MTLGSGGSSVVVPR-----NFRLLEELEH----------------------GEKGIGDGT 60

Query: 61  TSFFLKFGEEHLFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMT 120
            S+ +  G++ +++++    +    +TVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMT
Sbjct: 61  VSYGMDDGDD-IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT 120

Query: 121 CVNHETGVVESKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           CVNHETG+VE KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF
Sbjct: 121 CVNHETGLVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of ClCG10G018550 vs. TAIR 10
Match: AT2G36060.1 (MMS ZWEI homologue 3 )

HSP 1 Score: 181.0 bits (458), Expect = 8.1e-46
Identity = 79/89 (88.76%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YT
Sbjct: 57  NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYT 116

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           MEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct: 117 MEDILTQLKKEMAASHNRKLVQPPEGTFF 145

[Close]

BLAST of ClCG10G018550 vs. TAIR 10
Match: AT2G36060.2 (MMS ZWEI homologue 3 )

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 79/88 (89.77%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 87  TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTM 146
           TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+YTM
Sbjct: 59  TVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTM 118

Query: 147 EDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           EDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct: 119 EDILTQLKKEMAASHNRKLVQPPEGTFF 146

[Close]

BLAST of ClCG10G018550 vs. TAIR 10
Match: AT3G52560.4 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-44
Identity = 80/103 (77.67%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 72  LFLKALYEQLEVADSTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVES 131
           L L  +  ++     TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ 
Sbjct: 62  LLLLLVVTEINFMSQTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDP 121

Query: 132 KKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           KKFGLLANWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 122 KKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 164

[Close]

BLAST of ClCG10G018550 vs. TAIR 10
Match: AT2G36060.3 (MMS ZWEI homologue 3 )

HSP 1 Score: 174.9 bits (442), Expect = 5.8e-44
Identity = 78/89 (87.64%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TG V+SKKFG+LANWQR+YT
Sbjct: 57  NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTG-VDSKKFGVLANWQRQYT 116

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           MEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct: 117 MEDILTQLKKEMAASHNRKLVQPPEGTFF 144

[Close]

BLAST of ClCG10G018550 vs. TAIR 10
Match: AT3G52560.1 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 174.5 bits (441), Expect = 7.5e-44
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 86  STVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYT 145
           +TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREYT
Sbjct: 58  NTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYT 117

Query: 146 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 175
           MEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 118 MEDILVQLKKEMSTSHNRKLVQPPEGTCF 146

The following BLAST results are available for this feature:

BLAST of ClCG10G018550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043837.1	5.0e-66	79.50	ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo var. makuwa] >TYK25296....	[more]
KAG7028134.1	1.1e-47	60.34	Ubiquitin-conjugating enzyme E2 variant 1D [Cucurbita argyrosperma subsp. argyro...	[more]
KAA3472019.1	6.8e-47	71.11	ubiquitin-conjugating enzyme E2 variant 1D [Gossypium australe]	[more]
KAB2631790.1	1.5e-46	62.35	ubiquitin-conjugating enzyme E2 variant 1D [Pyrus ussuriensis x Pyrus communis]	[more]
RDX79999.1	4.4e-46	57.71	Ubiquitin-conjugating enzyme E2 variant 1D, partial [Mucuna pruriens]	[more]

BLAST of ClCG10G018550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ44	1.1e-44	88.76	Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SVD7	1.1e-42	87.64	Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q93YP0	7.1e-31	67.44	Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9CAB6	1.1e-28	63.95	Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q54D06	2.5e-23	49.44	Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=...	[more]

BLAST of ClCG10G018550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPU5	2.4e-66	79.50	Ubiquitin-conjugating enzyme E2 variant 1C OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5B6VRJ3	3.3e-47	71.11	Ubiquitin-conjugating enzyme E2 variant 1D OS=Gossypium australe OX=47621 GN=ube...	[more]
A0A5N5I2A9	7.4e-47	62.35	Ubiquitin-conjugating enzyme E2 variant 1D OS=Pyrus ussuriensis x Pyrus communis...	[more]
A0A371FNV5	2.1e-46	57.71	Ubiquitin-conjugating enzyme E2 variant 1D (Fragment) OS=Mucuna pruriens OX=1576...	[more]
A0A2P2L1J3	3.7e-46	58.05	Ubiquitin-conjugating family protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of ClCG10G018550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36060.1	8.1e-46	88.76	MMS ZWEI homologue 3	[more]
AT2G36060.2	1.1e-45	89.77	MMS ZWEI homologue 3	[more]
AT3G52560.4	2.0e-44	77.67	ubiquitin E2 variant 1D-4	[more]
AT2G36060.3	5.8e-44	87.64	MMS ZWEI homologue 3	[more]
AT3G52560.1	7.5e-44	87.64	ubiquitin E2 variant 1D-4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 53..174 e-value: 6.5E-25 score: 89.3
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 80..174
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 77..164 e-value: 1.0E-9 score: 38.2
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 44..174 score: 19.932968
None	No IPR available	PANTHER	PTHR24068:SF318	UBIQUITIN-CONJUGATING ENZYME/RWD-LIKE PROTEIN-RELATED	coord: 87..168
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 87..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G018550.2	ClCG10G018550.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0070534	protein K63-linked ubiquitination
cellular_component	GO:0005634	nucleus