ClCG01G013815 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G013815
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Retrotransposon protein
Location	CG_Chr01: 27675149 .. 27675664 (+)
RNA-Seq Expression	ClCG01G013815
Synteny	ClCG01G013815

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGGTAGCCACAATAGAGTGTAGAGTTAGATTTTTAAAGTGATAGTATACAGCGATTGCTAAGATGTTGAGTAATGCATGCAACGGATTTAGTTGGAACGAGGACTTTAAGTGTGTAGACGCTGAGCAGGACATGTTTAGTCTATAGGTCTGGGTAAGACCACTTTATAATATACTATGACAATTGATATAATTTTTACTAACATATTATATCCATTTGTAGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

mRNA sequence

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

Coding sequence (CDS)

ATGGAGTCATTACTACAGTTGGTTGACAGTGGGTGGAGCGCTGATAATGGTACGTTCAAGCCTAGCTATCTACAACAACTCCAACGTCTGCTGCATGAGAAAGTTCCTAATTGTGGCATAGGGTCACATCCCAATGTGAAAGGTATGAGGCACAAACCACTCCCACACTATGATGATCTTTCCATCGTGTTTGGAAGGGATAAGGCTATTGGTGATAGCTGTCAAACCCCTCTTGATCAAGCATATGAGACAAATGACCATGTAGGGGATGTTAGGTTGGGATCACAGGATAATTAG

Protein sequence

MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYETNDHVGDVRLGSQDN

Homology

[Close]

BLAST of ClCG01G013815 vs. NCBI nr
Match: XP_038889264.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 62/148 (41.89%), Postives = 77/148 (52.03%), Query Frame = 0


Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGI-------------------- 60
           +ESLLQLV++GW AD  TFKP YLQQLQ L  EK+P+C I                    
Sbjct: 21  VESLLQLVETGWQADKETFKPGYLQQLQCLFTEKIPSCSIRLSTIECKVRFLKRQYCAIV 80

Query: 61  ------------------------------GSHPNVKGMRHKPLPHYDDLSIVFGRDKAI 99
                                          SHPNVKG+RHKP PH D+LSIVFG+D+A 
Sbjct: 81  EMLSNACNGFGWNDEFKCVQVEKEVFDVWVWSHPNVKGLRHKPFPHCDELSIVFGKDRAT 140

[Close]

BLAST of ClCG01G013815 vs. NCBI nr
Match: XP_038895852.1 (uncharacterized protein LOC120084021 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
           ME+LL LV++GW +DNGTF+P YLQ L+R+LHEKV  C +                    
Sbjct: 21  MEALLYLVETGWRSDNGTFQPGYLQHLERILHEKVLECALNQNTIECKVRSLKKQYNAVS 80

Query: 61  ------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGDSCQTPLDQAYE 98
                             SHPN KGM +K  PHYDDLS VFG+D+A+G S + P   A  
Sbjct: 81  EMLSQSGFNWNEEFKCVQSHPNAKGMWNKSFPHYDDLSTVFGKDRAVGQSSENPYMMATN 140

[Close]

BLAST of ClCG01G013815 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 53/146 (36.30%), Postives = 70/146 (47.95%), Query Frame = 0


Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
           +E+LL LV++GW +DNGTF+P YLQ L+R+LHEKVP C +                    
Sbjct: 21  VEALLYLVETGWRSDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECKVRSLKKQYNIVS 80

Query: 61  -----------------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 98
                                        SHPN K M +KP PHYDD S VFG+D+ +G 
Sbjct: 81  EMLSQSGFDWNEEFKCVQVEREIFDLWVLSHPNAKRMWNKPFPHYDDFSTVFGKDRVVGK 140

[Close]

BLAST of ClCG01G013815 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 52/140 (37.14%), Postives = 69/140 (49.29%), Query Frame = 0


Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNC---------------------- 60
           +E+LL LV++GW  DNGTF+P YLQ L+++LHEKVP C                      
Sbjct: 67  VEALLYLVETGWRFDNGTFRPGYLQHLEQILHEKVPGCALNHNTIECKVRSLKKQYNAVS 126

Query: 61  ------GIG--------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 93
                 G+G                    SHPN K M +KP PHYDDLS +FG+D+A+G 
Sbjct: 127 EMLSQSGLGWNEEFKCVHVEREIFDLWVWSHPNAKRMWNKPFPHYDDLSTIFGKDRAVGQ 186

[Close]

BLAST of ClCG01G013815 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 4.6e-16
Identity = 53/146 (36.30%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 1   MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIG------------------- 60
           +E+LL LVD+GW +DNGTF+  YLQ L+R+ HEKV  C +                    
Sbjct: 59  VEALLYLVDTGWRSDNGTFRLEYLQHLERIHHEKVLGCALNQNTIECKVRSLKKQCNAVS 118

Query: 61  -----------------------------SHPNVKGMRHKPLPHYDDLSIVFGRDKAIGD 98
                                        SHPN KGM +KP PHYDDLS VFG+ KA+G 
Sbjct: 119 EMLSQSGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPFPHYDDLSTVFGKYKAVGQ 178

[Close]

BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match: A0A6P5NGC3 (uncharacterized protein LOC110279295 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC110279295 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MESLLQLVDSGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDDL 60
          +E L++L  + W  DNGTFK  Y + L+++LHEK+P C + SHPN  G+ +KP PH++ L
Sbjct: 25 VECLVELSTTSWKCDNGTFKSGYEKHLEKMLHEKIPGCDLKSHPNANGLYNKPFPHFEKL 84

Query: 61 SIVFGRDKAIGDSCQ 76
           I FGRD+A G + +
Sbjct: 85 GIAFGRDRAQGGNAE 99

[Close]

BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match: A0A5A7V4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001290 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.3e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
          +E L++LV   GW +DNGTF+P Y+ QL R++ EK+P C   SHP  KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGC--QSHPAAKGLLNKPFPYYDE 80

Query: 61 LSIVFGRDKAIGDSCQTPLD 80
          L+ VFGRD+A G   +T  D
Sbjct: 81 LTYVFGRDRATGRFAETFAD 98

[Close]

BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match: A0A5A7T5F8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00400 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 1  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
          +E L++LV   GW +DNGTF P YL QL R++ EK+P C   SHP  KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFCPGYLAQLVRMMVEKLPGC--QSHPAAKGLLNKPFPYYDE 80

Query: 61 LSIVFGRDKAIGDSCQTPLD 80
          L+ VFGRD+A G   +T  D
Sbjct: 81 LTYVFGRDRATGRFTETFAD 98

[Close]

BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match: A0A5D3DTF3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00110 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1   MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGI---GSHPNVKGMRHKPLPH 60
           M+ L++LV   GW +DNGTF+P YL QL  ++ EK+P C +    SH   KG+  KP P+
Sbjct: 21  MKCLMELVSMGGWKSDNGTFQPGYLAQLIHMMAEKLPGCRVRATTSHRTAKGLLSKPFPY 80

Query: 61  YDDLSIVFGRDKAIGDSCQTPLDQAYETND 87
           YD+L+ VFGRD+A G   +T  D  +   D
Sbjct: 81  YDELTYVFGRDRATGQFAETFADMGFNEPD 110

[Close]

BLAST of ClCG01G013815 vs. ExPASy TrEMBL
Match: A0A5D3BCA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00630 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.1e-14
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MESLLQLVD-SGWSADNGTFKPSYLQQLQRLLHEKVPNCGIGSHPNVKGMRHKPLPHYDD 60
          +E L++LV   GW +DNGTF P YL QL R++ EK+P C   SHP  KG+ +KP P+YD+
Sbjct: 21 VECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGC--QSHPAAKGLLNKPFPYYDE 80

Query: 61 LSIVFGRDKAIGDSCQTPLD 80
          L+ VFGRD+  G   +T  D
Sbjct: 81 LTYVFGRDRTTGRFTETFTD 98

The following BLAST results are available for this feature:

BLAST of ClCG01G013815 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889264.1	1.1e-22	41.89	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
XP_038895852.1	5.2e-20	41.48	uncharacterized protein LOC120084021 [Benincasa hispida]	[more]
XP_038902479.1	1.1e-17	36.30	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
XP_038892629.1	2.1e-16	37.14	uncharacterized protein At2g29880-like [Benincasa hispida]	[more]
XP_038895773.1	4.6e-16	36.30	uncharacterized protein LOC120083935 [Benincasa hispida]	[more]

BLAST of ClCG01G013815 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G013815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5NGC3	8.4e-16	46.67	uncharacterized protein LOC110279295 isoform X2 OS=Arachis duranensis OX=130453 ...	[more]
A0A5A7V4P8	9.3e-15	50.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5F8	2.7e-14	51.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTF3	3.5e-14	44.44	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCA9	6.1e-14	50.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of ClCG01G013815 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..98
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..40 coord: 41..87
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..40 coord: 41..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G013815.1	ClCG01G013815.1	mRNA