ClCG10G001600 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG10G001600
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr10: 1708754 .. 1709089 (+)
RNA-Seq Expression	ClCG10G001600
Synteny	ClCG10G001600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGA

mRNA sequence

ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGA

Coding sequence (CDS)

ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGA

Protein sequence

MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS

Homology

[Close]

BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_038905810.1 (uncharacterized protein LOC120091761 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-49
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGL 60
           MSLNCLSCQ+LQRTDSERHRDQ+IQTYY SDEFDSS+RSWSGNLSFRPHDR NRGGFRGL
Sbjct: 1   MSLNCLSCQILQRTDSERHRDQQIQTYYASDEFDSSERSWSGNLSFRPHDRHNRGGFRGL 60

Query: 61  AENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSA 110
            ENKVAPI HRR VS+ GKEPRLVRSSGMRRDWSFEDLRTIREEREPSA
Sbjct: 61  PENKVAPISHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEREPSA 109

[Close]

BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_008448684.1 (PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo] >KAA0053043.1 uncharacterized protein E6C27_scaffold344G001590 [Cucumis melo var. makuwa] >TYK11498.1 uncharacterized protein E5676_scaffold139G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 3.2e-42
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRG 60
           MSLNCLSCQLLQRTDSERHRD++IQTYY SDEFD SQRSWSGNLS     RQNRGG FRG
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFRG 60

Query: 61  LAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
           +A+NKVAP+ HRR VS+ GKEPRLVRSSGMRRDWSFEDLRTIREE+EPS NS
Sbjct: 61  MADNKVAPVCHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]

BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_031737872.1 (uncharacterized protein LOC116402546 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 86/119 (72.27%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG----- 60
           MSLNCLSCQ+LQRTDSERHRD+++QTYY SDEF+SS+RSWSGNL  RP+     G     
Sbjct: 1   MSLNCLSCQILQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGGGGG 60

Query: 61  ---GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
              GFRG+A+NKVAPIGHRR VS+ GKEPRL+RSSGMRRDWSFEDLR IREE++PS NS
Sbjct: 61  GGRGFRGMADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKQPSPNS 119

[Close]

BLAST of ClCG10G001600 vs. NCBI nr
Match: KAE8650028.1 (hypothetical protein Csa_011525 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG----- 60
           MSLNCLSCQ+LQRTDSERHRD+++QTYY SDEF+SS+RSWSGNL  RP+     G     
Sbjct: 1   MSLNCLSCQILQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGGGGG 60

Query: 61  ---GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIR 103
              GFRG+A+NKVAPIGHRR VS+ GKEPRL+RSSGMRRDWSFEDLR IR
Sbjct: 61  GGRGFRGMADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIR 110

[Close]

BLAST of ClCG10G001600 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-27
Identity = 75/119 (63.03%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MSLNCLSCQL-LQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRG 60
           MSLNCLSCQL LQR+DS++  +Q     Y +D+  S  RSWSGNLSFRP  RQN  GFR 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQH---EYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRV 60

Query: 61  LAENKVAPIGHRRTVSY-------DGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
             ENKVAP GHRR  S         GKEPRL+RS+GMRRDWSFEDLR IREE+E S NS
Sbjct: 61  RTENKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 116

[Close]

BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRG 60
           MSLNCLSCQLLQRTDSERHRD++IQTYY SDEFD SQRSWSGNLS     RQNRGG FRG
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFRG 60

Query: 61  LAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
           +A+NKVAP+ HRR VS+ GKEPRLVRSSGMRRDWSFEDLRTIREE+EPS NS
Sbjct: 61  MADNKVAPVCHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]

BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRG 60
           MSLNCLSCQLLQRTDSERHRD++IQTYY SDEFD SQRSWSGNLS     RQNRGG FRG
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSL----RQNRGGVFRG 60

Query: 61  LAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
           +A+NKVAP+ HRR VS+ GKEPRLVRSSGMRRDWSFEDLRTIREE+EPS NS
Sbjct: 61  MADNKVAPVCHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

[Close]

BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 86/115 (74.78%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG----G 60
           MSLNCLSCQ+LQRTDSERHRD+++QTYY SDEF+SS+RSWSGNL  RP+     G    G
Sbjct: 1   MSLNCLSCQILQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGGGRG 60

Query: 61  FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
           FRG+A+NKVAPIGHRR VS+ GKEPRL+RSSGMRRDWSFEDLR IREE++PS NS
Sbjct: 61  FRGMADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKQPSPNS 115

[Close]

BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.4e-27
Identity = 74/119 (62.18%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MSLNCLSCQL-LQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRG 60
           MSLNCLSCQL LQR+DS++  +Q     Y +D+  S  RSWSGNLSFRP  RQN  GFR 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQH---EYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRV 60

Query: 61  LAENKVAPIGHRRTVSY-------DGKEPRLVRSSGMRRDWSFEDLRTIREEREPSANS 112
             ENKVAP+GHRR  S         GKEPRL+RS+GMRRDWSFEDLR IRE++E S NS
Sbjct: 61  RTENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

[Close]

BLAST of ClCG10G001600 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.8e-26
Identity = 67/110 (60.91%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGL 60
           M+LNCLSCQLLQRTDSER  D ++Q YY S + + S RSWSGNLSFRP DR  +   R L
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYY-SGQIEPSGRSWSGNLSFRPPDRPKKEALRAL 60

Query: 61  AENKVAPIGHRR-----TVSYDGKEPRLVRSSGMRRDWSFEDLRTIREER 106
            E++  P+  RR      +S   KEP+LVRSSGMRRDWSFEDLR IREE+
Sbjct: 61  PEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of ClCG10G001600 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSER----HRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG 60
           MSLNCL+C +LQRTDS+R     +D   +  + +  F+   R    N S  P  R+   G
Sbjct: 1   MSLNCLACHILQRTDSDRDMGSRKDSSFKENFATSAFEKMVR----NRSSLPVVRRVNKG 60

Query: 61  FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREE 105
            R L    +   G       +  EP+LVRSSG+RRDWSFEDL+  +++
Sbjct: 61  HRRLYSADIMVYG-------ELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97

[Close]

BLAST of ClCG10G001600 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-09
Identity = 51/133 (38.35%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 1   MSLNCLSCQLLQRTDSERHRD------------QKIQTYYCSDEFDSSQRSWSGNLSFRP 60
           MSLNCLSCQ L RTDS +  D              +    C +      R+WSGNLS R 
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGG--RNWSGNLSPRI 60

Query: 61  HDRQNRGGFRGLAE--NKVAPIGHRR----------TVSYDGKEPRLVRSSGMRRDWSFE 107
           +++  R G   LA    KV  I H R           V    ++P+LVRS+G+RR+WSFE
Sbjct: 61  YEKIGRPG-SSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFE 120

The following BLAST results are available for this feature:

BLAST of ClCG10G001600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905810.1	2.7e-49	90.83	uncharacterized protein LOC120091761 [Benincasa hispida]	[more]
XP_008448684.1	3.2e-42	83.04	PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo] >KAA0053043.1 unc...	[more]
XP_031737872.1	4.0e-40	72.27	uncharacterized protein LOC116402546 [Cucumis sativus]	[more]
KAE8650028.1	2.0e-36	72.73	hypothetical protein Csa_011525 [Cucumis sativus]	[more]
XP_023539506.1	8.5e-27	63.03	uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo]	[more]

BLAST of ClCG10G001600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG10G001600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAS3	1.6e-42	83.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJN6	1.6e-42	83.04	uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=...	[more]
A0A0A0L198	6.6e-41	74.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1	[more]
A0A6J1GL99	5.4e-27	62.18	uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1L834	7.8e-26	60.91	uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186...	[more]

BLAST of ClCG10G001600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35215.1	1.2e-10	38.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G46770.1	5.0e-09	38.35	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..64
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G001600.1	ClCG10G001600.1	mRNA