ClCG02G009330 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G009330
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	CG_Chr02: 13799532 .. 13800414 (-)
RNA-Seq Expression	ClCG02G009330
Synteny	ClCG02G009330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTCCATTCTCCTATCCCGTTCTCCCTCTCAGACACTCAGCTTGGCAGTATCGCTGACTCGCTGTCGCTCTCCTCGCACTTGCAGCGGCAGTGTCGCTCTCCTTTCGATCTCGCTCTCCTCTCAGTCTCGCTCTCCTCTCGATCTCGCTCTCCTCTCGGTCTCGCTCTCTTCTTGATCTCGCTCTCTGCTGGTTCGTCTTCGTTCATAATTTGGTCGTTCGTTTATATATATATTTAGTTTCATTTCATTTCAGCTTCGTAATTTTTTTTCTTCTACTGTTCTTCACTTAATTTTTTTTTTGTTTTTTTTTTATAAATTATAGATCTCTTGCCTCTTGGAACAGTAGGTTCTTCCAGCAGTGGCCGATTTCGAGGTTTGTAATTTTGTTCTCCCTATTGCCAAATTCACTTCTGGGTTGTGGTTGTTTGTTAATGTAAATATATATTTTTTAGTATTTGTTTTTTGTTTTGGATGTTCTATAAAATAGATTTTATGTTAGGTTGATGGTTGTTCTGTTGTGACTCTAGTTTTTCTATTTTTATAGATTATGGAGAGCAGTGGAAATCTTAGTCAAACTAGTCCTAGTCCTAGTCTTAGTCCTAGTCATAGTCCTAGTGCCGCTCCCCTCGATCCTGTCGTTGCTAATACAATTGGAATTAGTAGTTCAAGTAAACCACCATTACATTCTAAGAAGAGATCTAGATCTACTAAGACAACAACCTCCACTGTATGGGATCACTTCACAAAGTTTGAAAATAACAGTAATAGGTGCACGTGCAATTATTATGGTAAAGAGTATGCATGTGATACTACTTCTTGTGGGACTAGCACATTATGGAAACACTTAAAAAATCAGTGTAAGAAGTATTCATATTAG

mRNA sequence

ATGTCGCTCCATTCTCCTATCCCGTTCTCCCTCTCAGACACTCAGCTTGGCAGTATCGCTGACTCGCTGTCGCTCTCCTCGCACTTGCAGCGGCAGTGTCGCTCTCCTTTCGATCTCGCTCTCCTCTCAGTTCTTCCAGCAGTGGCCGATTTCGAGGTTTGTAATTTTGTTCTCCCTATTGCCAAATTCACTTCTGGGTTGTGGTTGTTTGTTAATATTATGGAGAGCAGTGGAAATCTTAGTCAAACTAGTCCTAGTCCTAGTCTTAGTCCTAGTCATAGTCCTAGTGCCGCTCCCCTCGATCCTGTCGTTGCTAATACAATTGGAATTAGTAGTTCAAGTAAACCACCATTACATTCTAAGAAGAGATCTAGATCTACTAAGACAACAACCTCCACTGTATGGGATCACTTCACAAAGTTTGAAAATAACAGTAATAGGTGCACGTGCAATTATTATGGTAAAGAGTATGCATGTGATACTACTTCTTGTGGGACTAGCACATTATGGAAACACTTAAAAAATCAGTGTAAGAAGTATTCATATTAG

Coding sequence (CDS)

ATGTCGCTCCATTCTCCTATCCCGTTCTCCCTCTCAGACACTCAGCTTGGCAGTATCGCTGACTCGCTGTCGCTCTCCTCGCACTTGCAGCGGCAGTGTCGCTCTCCTTTCGATCTCGCTCTCCTCTCAGTTCTTCCAGCAGTGGCCGATTTCGAGGTTTGTAATTTTGTTCTCCCTATTGCCAAATTCACTTCTGGGTTGTGGTTGTTTGTTAATATTATGGAGAGCAGTGGAAATCTTAGTCAAACTAGTCCTAGTCCTAGTCTTAGTCCTAGTCATAGTCCTAGTGCCGCTCCCCTCGATCCTGTCGTTGCTAATACAATTGGAATTAGTAGTTCAAGTAAACCACCATTACATTCTAAGAAGAGATCTAGATCTACTAAGACAACAACCTCCACTGTATGGGATCACTTCACAAAGTTTGAAAATAACAGTAATAGGTGCACGTGCAATTATTATGGTAAAGAGTATGCATGTGATACTACTTCTTGTGGGACTAGCACATTATGGAAACACTTAAAAAATCAGTGTAAGAAGTATTCATATTAG

Protein sequence

MSLHSPIPFSLSDTQLGSIADSLSLSSHLQRQCRSPFDLALLSVLPAVADFEVCNFVLPIAKFTSGLWLFVNIMESSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVWDHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY

Homology

[Close]

BLAST of ClCG02G009330 vs. NCBI nr
Match: TYK16769.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 75/107 (70.09%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         NT G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNTTGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. NCBI nr
Match: KAA0031947.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 75/107 (70.09%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         NT G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNTTGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. NCBI nr
Match: KAA0067548.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         N  G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNATGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. NCBI nr
Match: KAA0065439.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK07824.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         N  G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNATGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. NCBI nr
Match: TYK08901.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         N  G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNATGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. ExPASy TrEMBL
Match: A0A5D3D2K8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00240 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 75/107 (70.09%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         NT G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNTTGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. ExPASy TrEMBL
Match: A0A5A7SRD2 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00270 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 75/107 (70.09%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         NT G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNTTGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. ExPASy TrEMBL
Match: A0A5D3C9B8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001200 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         N  G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNATGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. ExPASy TrEMBL
Match: A0A5A7VIJ7 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00070 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         N  G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNATGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

[Close]

BLAST of ClCG02G009330 vs. ExPASy TrEMBL
Match: A0A5D3CAM1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00090 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 76  SSGNLSQTSPSPSLSPSHSPSAAPLDPVVANTIGISSSSKPPLHSKKRSRSTKTTTSTVW 135
           SSG  S+T  SPSLSPS +PS         N  G  SSSKPPL  KK+ R+TK TTSTVW
Sbjct: 4   SSGQHSET--SPSLSPSPAPS-------TNNATGTVSSSKPPLPDKKKVRATKKTTSTVW 63

Query: 136 DHFTKFENNSNRCTCNYYGKEYACDTTSCGTSTLWKHLKNQCKKYSY 183
           DHFTK E NS+RCTCNY  KEY CDTTSCGTSTLWKHLKNQCKKY Y
Sbjct: 64  DHFTKLEENSSRCTCNYCDKEYCCDTTSCGTSTLWKHLKNQCKKYPY 101

The following BLAST results are available for this feature:

BLAST of ClCG02G009330 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16769.1	6.7e-29	70.09	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0031947.1	6.7e-29	70.09	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0067548.1	2.6e-28	69.16	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0065439.1	2.6e-28	69.16	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK08901.1	2.6e-28	69.16	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of ClCG02G009330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G009330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2K8	3.3e-29	70.09	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7SRD2	3.3e-29	70.09	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3C9B8	1.2e-28	69.16	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7VIJ7	1.2e-28	69.16	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3CAM1	1.2e-28	69.16	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of ClCG02G009330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00614	bed5	coord: 129..180 e-value: 6.3E-14 score: 62.3
None	No IPR available	PANTHER	PTHR34396:SF1	OS03G0264950 PROTEIN	coord: 87..181
None	No IPR available	PANTHER	PTHR34396	OS03G0264950 PROTEIN-RELATED	coord: 87..181
IPR003656	Zinc finger, BED-type	PFAM	PF02892	zf-BED	coord: 132..178 e-value: 1.9E-5 score: 24.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G009330.1	ClCG02G009330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003677	DNA binding