CaUC09G178250 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G178250
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Ciama_Chr09: 37496722 .. 37501355 (+)
RNA-Seq Expression	CaUC09G178250
Synteny	CaUC09G178250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTAGCTGGACTTTTGCCTGGTTTAATGACGCTGAATATTTTGATTGATTGGCTTTGTAATGTGAATCGGGTTAAAGAAGGTCTTGTGGCCATGGCAGGGATTTTAAGGAGTGGTTACATTCCTGATACCGTGACATATACGACCTTGATTAAGGGCTTGTGTATGGAGCCTAGGATTAATGAAGTGCCAAAGTTATTTATGAGAATGCAAAAGTTAGGTTGTAGCCCAATGTGGTTACTTATGGGACTTTAGTGAAGGGACTCTATCGAACGTGGAATATTAACATTGCACTTAAGTTGCATCAAGGAATGCTCCATGAGACTAGTCGATATGGGATTAATTGTAAGCCTAATGACATTTGGTATTCTATCATTATAGACGGACTTTGTAAGGATTGACGAAAATACAAGGCAAGAGAACTTTTTGAGGAAATGAAAGCTCATGGAATGATTCCCGATGTTTTTTCTTATAGCTCCTTGATTCGTGGATTTTGCTTAGGTGGAAAGTGGGAGGAAACTAAACGTTTGTTCAATGAGACGGTGGATCAAAGTGTTCAACCAAATATGGTCACAAGTCAGGAAAGATTATCAAGGCTAAGGAGTTGCTAGAAGTGATGCTTCGAGAGATGTATTGTTCCAAATTTGTTTACTTATCATTCACTAATTGAGAGGTTTTGTTTGGTTGGTGACCTGTTGGTGAATAGCTACACTATGCTAATCAATGTGTATTGTAAAACTTCGAAGGTGGAAGAAGCAAAGAAGCTTTACAATGAAATGCTTCAAGTGAGAATGAGGCCAAGTGCGAGAACATATGGTGTCTTGTTAAAAGGTCTTTTTCAGGTAGGCAATGTTAGTGATGCAAAAATGCTATTTGGTGTCTTTAAAGCTTATGGTATTGCGCAAATTTATCTATATATGGCATTTTCTTAAATGGGATGTGTAAGAATGGTTGTTTATTGGGAGCGATAGAACTTTTTAATGACTTGAAATCATACAACTTGAAATTGGACATTGAAGCCTTTAATCGTGTAATTGATGGCCTTTGTAAAGCAGGAAAACTTGAAATGGGAGCTTTTTGAAAAACTGTCCCACTAAGGGGTTCAATTAGATGTTGCTACTTATTCCATTATGATCCATGGGCTTTGTAAGGAGGGACAAGTAGAGAAGGTAGATGGAAGAAAATGGTTGTACATAATTACTTATAATACACTCTTGCATGGTTTCTGCAAGGGTAATAAATCAAAGGAGGTAATTGAAATTCTTCATAGGATGGTTCAGAAGGATGTGTCGCCAAGTGTCATCACTTACACCATAGTCGTTGGCATGCTTTCCAAAAATGAAAAATATCAAGAATGTCTAGACTTACTTCCAAGGTATCCTGTCCAAGAGTGTCAGTTGATAGAACACTTACTGATAAACTCATTAAGAGCTATACGACTTGAAAATTCCTAATCAGCCTCAAGAAAGAACAACACATCATTTCGTGGACTCAATAAGTGTCCTCTTCTTTTCCCTCTATATTCCACTTTTCATTCTTGTAGATTGCTTGCCTTTATAGGTCCTTTTGTTGTGATTTCTGATATGCTTTATTAGAGTTTCAGGAGGATAATAATCATAAAGAGTAGATAAACCAACATTGAACAAATAAGTATGTCCTCTTAGTCATCGTATTTGTTCTTATCTTCTTCCTTGTTTATCTAATTTAGTTTATTGAAATTGTGACGGATTGTTAATGTAATCAACTGTGCAATTGGGCAATCATTGCATCCAAATTGAGTGATAAGACAACAAGACAATGTAGAAGAAGGTAACTGAAAGGATAAAAACAATGCTAACTATTAGATTTAAAGGATTATTGTTGTATTCTGTTACAACCAATAGGACATTTAAAGCAAGGAATAGAATTTTGAATTCTGGAGTGTTGTTTAGTCATGGTACTTACGGTATAAAGAGTTAATAAGGCATGAAATTATTGTTTTTTAGTTGTGAGGTCCACAAATTCCTTAGACCTAACTAATACAACCAATTCTCTTTTCCTTTGGGTTGATAGCGTTTCACTTATGTGAATGGCTTATGAGAATTGCTATTTCAAAAGGATAGACGTAAGTGAATTTTCATTTTAAGGAAAGGAGATGGTCTCTAGAGGATTTGTTTTGATTATTCCCCCAATTTTTAAGACCGGAAAATCCATGAAAAGATAATATGATGTGAGAAAAAAGAAAATAGAATGATTTTGAATTCTCTAAATGCATGATTGAGAGTGATTTTGAAAAAGCTAAAATCATTTGTCATGTTCAAAATTATTTAGATATATGTCTTTAAACTTTTCAATATCAAATTGGTCATTATTTCCTCGACTTTAGAACAAATTGATGATGTGGCTCTAAGTATATAAGTGTACATTTGATAAAATGTTAGTAAACTGTCTCTTTAAAATTTGATAAACACTTTGAAGGGCTTTTTAGCAGTATTGTAAAGTGTTTTTAATTAAATTAAAGATATGGAAGGCTTTTAGGCTTAGCCATTAAACTTTCACCTTTATTAAAGGCAGTTTCACATTAATATTGAATTGTTGGTGATTTTTGAAGGGTAGATCTGTAAATAATTTAAAAATGGACTTTTAATTATTCACTCTATCGAAATAAAAATTTTAAAAGCATTTTTTGAAACTAAAAACCTTAAAATCACTTTTTGAAACTATTTTCATGAGCTCACTTTAAAGATATACGTGGAAGTGATTTTAGAATGGTTATAAACATTTGTCAGGTTCAAAATTATTACAAAATATGTCTTTAATCATTCAATATTATCATTGTTATTTGCTCTCAACTATATAATAAATTGATGACATGACTTTGAATACATATTCTAACTTGATGATATAGATGTGTATTGAATTGAAATACAAAGGTTAGCTAAAGTAATACATAATGAATTTCAAATATGACTTCAATACGACTCAATTATTGCCCTAAAAAATAGAGATTTCAATCACATTAATTAAAGTTGATTCTATACTAAGGAAAGAGGAAAACAAGGAGGAGATGGGGCAATCACAAAAGAAGAGACAAGCCAACATGAGTTTAACAAGCATAAATTATATACTTTTAGAATGTTCAAATCTCTGCCCGAGGGACTCAAAAATAAATAAATAAAGAGAAGCATAGCCAAAGAAAAAGAGAAGCATAGCCAAAGAAGAAAACCCAAAATCTAGGGGTGTTCAAATGACTCGAAGAACCCAAACTACCCAACCCGAATTATAAGGGTTGGGTTGGGTTAGATTTATTTTTTTTTTATTATTATTATTATTTTTTTTTTTTTGTATTTTTTGGGTTAGGTTGAGTCTAGAGTTGCAGTTTGAAAAATTCGAGTTGACCCAACCCAACCCATATATATATATATATATATATATATATATATATATATATATATATATATATTATAAGTTCTCATTTTTTGGTTCTTAAGGTCTCCCAATTCTCTACTCTTAACTTGAAGCTTTTGTCGCCTACCTCCTTGGTGCTAATTGTCGTCATTTGTTTGCTCTTTACCGCTCGTTTGCCACTCAGATTTAGTTCTCTACCGTTCAACTACTGTCGCAGTAACATCGTTCGTCTACTGTCCATTCGTTTGTCGCTTGATCCATCGATTCATTCGCAACTTCATTCATGTATTTTTATTTTTTTATTTTTTTTTAGTTTTAGACCTACACTTATATCTTGTGCTTCTTCATTCTGACTACATTGATCGTGGATCAATGTGTTTTATAATTGCTACTATATTTCTAAATTTACCAAAAAAACAAGGATAAAAGGGGAAAAAACACACACACAACCCGACAACCTAACCCAACCCAACCCGAATTTTAAAGGTTGGGTTGGGTTGGGTACCTTATCCAGGTAGCTATCTTGTCCAATCCGAATTTTTTAGTTAGTCCAAAATATGCCTCCAACCCAACCCATGTACACCCCCTACCAAAATCCGCCAAAATATTTACAAACCATATCAATGAAACACATCGAACCATGAGCAATATGGGCACATATCTTTATTATATGTGGAGCATATCAAAGGAACATGAAAACAAGACTCATGTTGCTTGGTCTCGAGCCTTCGTCTTGTATCATTTTCTTGTGTGATTGTTGAATAATCGAAACCTTTTTTTTTTTAACTAGGTGCCTGTAACTCCGAGTTCCCTTTGAGAACTAAAGTTGTAGAGTAGCCTGCTTCTTCTTCGAGCAAGCTATTTTTCCAAAGTAGTTAGCTTCTAATTTGAGCATCCTCGAATAGTAGCTTGAACCCTGACATGTATCATACTGAGAGCCATGACAATTTTACCAACGACCAAACTTCATTTATACGAGAAAAACTACTAGAACTTCTCCACCCTCTCCACATGCAATGAGCATGACATCAACATTACCACTTGACCTTACAAAAATTTAGCAGTCTAACAAACTTATGAGATATATGACATCTTCATTATGTGATGACCAAAAACCTCAAGGTCACTATGCCTTTATACTACTATCCCCTCTAAAAGAATAATGAATCTCGCTAACAGCCATATATAAGTGAGGTTTTTGTCAAAGCAAATTTCATCACAGGAACTCAAAAATTTCATCGTGA

mRNA sequence

ATGCGCCTAGCTGGACTTTTGCCTGGTTTAATGACGCTGAATATTTTGATTGATTGGCTTTGTAATGTGAATCGGGTTAAAGAAGGTCTTGTGGCCATGGCAGGGATTTTAAGGAGTGGTTACATTCCTGATACCGTGACATATACGACCTTGATTAAGGGCTTGTTGAAGGGACTCTATCGAACGTGGAATATTAACATTGCACTTAAGTTGCATCAAGGAATGCTCCATGAGACTAGTCGATATGGGATTAATTGTGGAAAGTGGGAGGAAACTAAACGTTTGTTCAATGAGACGGTGGATCAAAGTGTTCAACCAAATATGGTCACAAGTCAGGAAAGCTACACTATGCTAATCAATGTGTATTGTAAAACTTCGAAGGTGGAAGAAGCAAAGAAGCTTTACAATGAAATGCTTCAAGTGAGAATGAGGCCAAGTGCGAGAACATATGGTGTCTTGTTAAAAGGTCTTTTTCAGGTAGGCAATGTTAGTGATGCAAAAATGCTATTTGGTGTCTTTAAAGCTTATGATGTTGCTACTTATTCCATTATGATCCATGGGCTTTGTAAGGAGGGACAAGTAGAGAAGGTAGATGGAAGAAAATGGTTGTACATAATTACTTATAATACACTCTTGCATGGTTTCTGCAAGGGTAATAAATCAAAGGAGGTAATTGAAATTCTTCATAGGATGGTTCAGAAGGATGTGTCGCCAAGTGTCATCACTTACACCATAGTCGTTGGCATGCTTTCCAAAAATGAAAAATATCAAGAATGTCTAGACTTACTTCCAAGGTATCCTGTCCAAGAGTGTGCCTGTAACTCCGAGTTCCCTTTGAGAACTAAAGTTGTAGAGAACTCAAAAATTTCATCGTGA

Coding sequence (CDS)

ATGCGCCTAGCTGGACTTTTGCCTGGTTTAATGACGCTGAATATTTTGATTGATTGGCTTTGTAATGTGAATCGGGTTAAAGAAGGTCTTGTGGCCATGGCAGGGATTTTAAGGAGTGGTTACATTCCTGATACCGTGACATATACGACCTTGATTAAGGGCTTGTTGAAGGGACTCTATCGAACGTGGAATATTAACATTGCACTTAAGTTGCATCAAGGAATGCTCCATGAGACTAGTCGATATGGGATTAATTGTGGAAAGTGGGAGGAAACTAAACGTTTGTTCAATGAGACGGTGGATCAAAGTGTTCAACCAAATATGGTCACAAGTCAGGAAAGCTACACTATGCTAATCAATGTGTATTGTAAAACTTCGAAGGTGGAAGAAGCAAAGAAGCTTTACAATGAAATGCTTCAAGTGAGAATGAGGCCAAGTGCGAGAACATATGGTGTCTTGTTAAAAGGTCTTTTTCAGGTAGGCAATGTTAGTGATGCAAAAATGCTATTTGGTGTCTTTAAAGCTTATGATGTTGCTACTTATTCCATTATGATCCATGGGCTTTGTAAGGAGGGACAAGTAGAGAAGGTAGATGGAAGAAAATGGTTGTACATAATTACTTATAATACACTCTTGCATGGTTTCTGCAAGGGTAATAAATCAAAGGAGGTAATTGAAATTCTTCATAGGATGGTTCAGAAGGATGTGTCGCCAAGTGTCATCACTTACACCATAGTCGTTGGCATGCTTTCCAAAAATGAAAAATATCAAGAATGTCTAGACTTACTTCCAAGGTATCCTGTCCAAGAGTGTGCCTGTAACTCCGAGTTCCCTTTGAGAACTAAAGTTGTAGAGAACTCAAAAATTTCATCGTGA

Protein sequence

MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLYRTWNINIALKLHQGMLHETSRYGINCGKWEETKRLFNETVDQSVQPNMVTSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKMLFGVFKAYDVATYSIMIHGLCKEGQVEKVDGRKWLYIITYNTLLHGFCKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECLDLLPRYPVQECACNSEFPLRTKVVENSKISS

Homology

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BLAST of CaUC09G178250 vs. NCBI nr
Match: XP_038896203.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 6.2e-69
Identity = 190/501 (37.92%), Postives = 215/501 (42.91%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           M LAGL P   TLNILI+ LCNVNRV EG  AMAGILR GYIPD +TY+TLIKG      
Sbjct: 133 MCLAGLFPNFFTLNILINCLCNVNRVSEGFAAMAGILRRGYIPDKITYSTLIKGLCMEYR 192

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL RT NINIALKLHQ ML+ET +YGINC   
Sbjct: 193 ISEATRLFMRMQKLGCRPDVVTYGTLIKGLCRTGNINIALKLHQEMLNETGQYGINCKPN 252

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKWEE KRLFN
Sbjct: 253 VICYSSIIDGLCKDRREDEASELFEEMKTRGMIPDVISYTSLIHGFCWGGKWEEAKRLFN 312

Query: 181 ETVDQSVQPNMVTSQE-------------------------------------------- 240
           E VDQ VQP+MVT                                               
Sbjct: 313 EMVDQGVQPDMVTFNVLIDMLCKEGKVIEAKKLLDVMIQRGIVPNLVTYNSLIEGFCLVG 372

Query: 241 ----------------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
                                 SYT LIN YCKT KV EA KLYNEMLQV  RP+ +TYG
Sbjct: 373 DLNSGRELFVSMPSKGCEPDVISYTTLINGYCKTLKVNEAMKLYNEMLQVGKRPNVKTYG 432

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BLAST of CaUC09G178250 vs. NCBI nr
Match: KGN45331.2 (hypothetical protein Csa_015776 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 6.7e-63
Identity = 182/501 (36.33%), Postives = 211/501 (42.12%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           MRLAGL P L TL+IL + LCNVNRV E L AMAGILR GYIP+ VTY TLIKG      
Sbjct: 117 MRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYNTLIKGLCMEHR 176

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL RT NIN+ALKL+Q ML+  S YGINC   
Sbjct: 177 ISEATRFFLRMQKLGCTPNVVTYGTLIKGLCRTGNINMALKLYQEMLNYASHYGINCKPD 236

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKWEE+KRLF+
Sbjct: 237 VITYSIIIDGLCKVGRDDEAKELFEKMKAQGMIPNVISYSSLIHGLCCAGKWEESKRLFD 296

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E  D+ VQP+ VT                                               
Sbjct: 297 EMWDEGVQPDKVTFNVLIHTLSKEGKVSEAKKLLEVMIQRGIVPDLVTYNSVIHAFCKVG 356

Query: 241 -------------------SQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
                               + SY +LIN YCKTSKVEEA  LYNEMLQV  RP+A TYG
Sbjct: 357 HLDSARELFLSMPSKGCKHDEISYNILINGYCKTSKVEEAMNLYNEMLQVGKRPNATTYG 416

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BLAST of CaUC09G178250 vs. NCBI nr
Match: XP_011659273.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus] >KAE8646303.1 hypothetical protein Csa_016074 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-62
Identity = 181/500 (36.20%), Postives = 216/500 (43.20%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           MRLAGL P L TL+IL + LCNVNRV E L AMAGILR GYIP+ VTYTTLIKG      
Sbjct: 117 MRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHR 176

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N+NIALKLH+ ML++ S+YG+NC   
Sbjct: 177 ISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPG 236

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKW+++K LF+
Sbjct: 237 VITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFD 296

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VDQ VQP+MVT                                               
Sbjct: 297 EMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVG 356

Query: 241 -------------------SQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 270
                               + SYT LIN YCKT KV+EA  LYNEMLQV  RP+  TYG
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKRPNVTTYG 416

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BLAST of CaUC09G178250 vs. NCBI nr
Match: XP_022155826.1 (pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia])

HSP 1 Score: 248.4 bits (633), Expect = 7.4e-62
Identity = 180/503 (35.79%), Postives = 213/503 (42.35%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           M LAG+LP  +TLNIL++ LCNVNRV EGL AMAGI+R GYIP+ VTYT+LIKG      
Sbjct: 140 MSLAGILPNYITLNILLNCLCNVNRVSEGLAAMAGIIRRGYIPNIVTYTSLIKGLCMEHR 199

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N NIALKLH+ ML+ T RYGI C   
Sbjct: 200 ISEATRLFMRMQKLGCTPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGITCKPN 259

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKWEE K LFN
Sbjct: 260 VICYSTIIDGLCKDGLEDKARELFEEMKAQGMLPDVISYSSLIHGFCYGGKWEEAKSLFN 319

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VD  VQPN+VT                                               
Sbjct: 320 EMVDHGVQPNVVTFNVLMDMLCKAGKVIEAKELLELMVQGGNNAPDLFTYNTLMDGFCLV 379

Query: 241 --------------------SQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTY 272
                               +  SY +LIN YCK  K+EEA KLYNEMLQV +RPS  TY
Sbjct: 380 GDLNSARELFINMPNKGCEPNVISYNVLINGYCKNWKMEEAMKLYNEMLQVGIRPSVITY 439

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BLAST of CaUC09G178250 vs. NCBI nr
Match: KAA0059713.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 8.2e-61
Identity = 180/501 (35.93%), Postives = 216/501 (43.11%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           M LAGL P ++TLNIL++ LCNVNRV E L A+AGILR GYIPD VTY TLIKG      
Sbjct: 66  MCLAGLSPSVVTLNILVNCLCNVNRVSEALAALAGILRRGYIPDIVTYNTLIKGLCMEHR 125

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N+NIALKLHQ ML++TS+YGINC   
Sbjct: 126 ISEATRLFLRMQKLGCTPNVVTYGTLIKGLCQTGNVNIALKLHQEMLNDTSQYGINCKPN 185

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKW+E+K+LF+
Sbjct: 186 VISYSIIIDGLCKVGREDEAKETFEEMKAQGMVPNVISYSSLIHGFCCAGKWDESKQLFD 245

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VDQ VQPN VT                                               
Sbjct: 246 EMVDQGVQPNKVTFSVLIDTLCKEGKVIEAKKLLELMIESGIVPNVFTYNSLLKGFCMVG 305

Query: 241 ----SQE---------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
               ++E               SYT+LIN YCKT KVEEA KLYN+ML V  RP+  TYG
Sbjct: 306 DLNSARELFVSMPSKGCEPDVISYTVLINGYCKTLKVEEAMKLYNKMLLVGKRPNVITYG 365

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BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: P0C7R3 (Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g64583 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.0e-31
Identity = 89/289 (30.80%), Postives = 147/289 (50.87%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G  P ++T   L+   C VNR+ +    +  +++SGY P+ V Y TLI GL K   
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK--- 191

Query: 61  RTWNINIALKLHQGMLHETSRYGINC---------------GKWEETKRLFNETVDQSVQ 120
               +NIAL+L    L+E  + G+                 G+W +  R+  + + +S+ 
Sbjct: 192 -NGELNIALEL----LNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN 251

Query: 121 PNMVTSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSD 180
           P++VT    +T LI+V+ K   ++EA++LY EM+Q  + P+  TY  ++ GL   G + D
Sbjct: 252 PDVVT----FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 311

Query: 181 AKMLFGVFKAY----DVATYSIMIHGLCKEGQVEKVDGRKWLY----------IITYNTL 240
           AK  F +  +     +V TY+ +I G CK   V+  +G K             I TYNTL
Sbjct: 312 AKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVD--EGMKLFQRMSCEGFNADIFTYNTL 371

Query: 241 LHGFCKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECL 261
           +HG+C+  K +  ++I   MV + V+P +IT+ I++  L  N + +  L
Sbjct: 372 IHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406

[Close]

BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q0WKZ3 (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX=3702 GN=At1g64580 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-30
Identity = 87/285 (30.53%), Postives = 142/285 (49.82%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G  P ++TL  L++  C  NR +E +  +  +   G++P+ V Y T+I GL K   
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR- 199

Query: 61  RTWNINIALKL-----HQGMLHETSRYGI------NCGKWEETKRLFNETVDQSVQPNMV 120
              ++N AL++      +G+  +   Y        N G+W +  RL  + V + + PN++
Sbjct: 200 ---DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 259

Query: 121 TSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKML 180
                +T LI+ + K   + EA+ LY EM++  + P+  TY  L+ G    G + DAK +
Sbjct: 260 ----FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 319

Query: 181 FGVFKAY----DVATYSIMIHGLCKEGQVEKVDGRKWLY----------IITYNTLLHGF 240
           F +  +     DV TY+ +I G CK  +VE  DG K               TYNTL+HG+
Sbjct: 320 FDLMVSKGCFPDVVTYNTLITGFCKSKRVE--DGMKLFCEMTYQGLVGDAFTYNTLIHGY 379

Query: 241 CKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECL 261
           C+  K     ++ +RMV   VSP ++TY I++  L  N K ++ L
Sbjct: 380 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKAL 414

[Close]

BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q9LUR2 (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g16710 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.8e-29
Identity = 84/285 (29.47%), Postives = 141/285 (49.47%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G  P L+T   L++  C+ NR+++ +     IL  G+ P+ VTYTTLI+ L K  +
Sbjct: 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRH 203

Query: 61  RTWNINIALKLHQGMLHETSRYGI-----------NCGKWEETKRLFNETVDQSVQPNMV 120
               +N A++L   M    SR  +             G+W +   L  + + + ++PN++
Sbjct: 204 ----LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVI 263

Query: 121 TSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKML 180
           T    +T LI+ + K  K+ EAK+LYN M+Q+ + P   TYG L+ GL   G + +A+ +
Sbjct: 264 T----FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQM 323

Query: 181 FGVFKAY----DVATYSIMIHGLCKEGQVEKVDGRKWLY----------IITYNTLLHGF 240
           F + +      +   Y+ +IHG CK  +VE  DG K  Y           ITY  L+ G+
Sbjct: 324 FYLMERNGCYPNEVIYTTLIHGFCKSKRVE--DGMKIFYEMSQKGVVANTITYTVLIQGY 383

Query: 241 CKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECL 261
           C   +     E+ ++M  +   P + TY +++  L  N K ++ L
Sbjct: 384 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKAL 418

[Close]

BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-26
Identity = 87/296 (29.39%), Postives = 132/296 (44.59%), Query Frame = 0


Query: 5   GLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKG-----L 64
           G  P ++  N +ID LC   RV +       I R G  P+ VTYT L+ GL         
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 65  YRTWNINIALKLHQGMLHETSRYG--INCGKWEETKRLFNETVDQSVQPNMVTSQE---- 124
            R  +  I  K+   ++  ++     +  GK  E K LF E V  S+ P++VT       
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 125 ---------------------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPS 184
                                      SY  LIN +CK  +VE+  KL+ EM Q  +  +
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 185 ARTYGVLLKGLFQVGNVSDAKMLFGVFKAY----DVATYSIMIHGLCKEGQVEKV----- 244
             TY  L++G FQ G+V  A+  F     +    D+ TY+I++ GLC  G++EK      
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 245 DGRKW---LYIITYNTLLHGFCKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGML 251
           D +K    L I+TY T++ G CK  K +E   +   +  K + P ++TYT ++  L
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480

[Close]

BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25
Identity = 80/285 (28.07%), Postives = 134/285 (47.02%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G+ P ++T N LI+ LCN  R  +    ++ +L     P+ VT+  LI       +
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALI----DAFF 343

Query: 61  RTWNINIALKLHQGMLH-----ETSRYGINC------GKWEETKRLFNETVDQSVQPNMV 120
           +   +  A KLH+ M+      +T  Y +         + +E K++F   V +   PN+ 
Sbjct: 344 KEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI- 403

Query: 121 TSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKML 180
              ++Y  LIN +CK  +VE+  +L+ EM Q  +  +  TY  +++G FQ G+   A+M+
Sbjct: 404 ---QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 463

Query: 181 FGVFKA----YDVATYSIMIHGLCKEGQVEKV--------DGRKWLYIITYNTLLHGFCK 240
           F    +     D+ TYSI++HGLC  G+++               L I  YNT++ G CK
Sbjct: 464 FKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCK 523

Query: 241 GNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECLDL 263
             K  E  ++   +    + P V+TY  ++  L      QE  DL
Sbjct: 524 AGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDL 557

[Close]

BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A6J1DSW3 (pentatricopeptide repeat-containing protein At1g63330-like OS=Momordica charantia OX=3673 GN=LOC111022854 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-62
Identity = 180/503 (35.79%), Postives = 213/503 (42.35%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           M LAG+LP  +TLNIL++ LCNVNRV EGL AMAGI+R GYIP+ VTYT+LIKG      
Sbjct: 140 MSLAGILPNYITLNILLNCLCNVNRVSEGLAAMAGIIRRGYIPNIVTYTSLIKGLCMEHR 199

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N NIALKLH+ ML+ T RYGI C   
Sbjct: 200 ISEATRLFMRMQKLGCTPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGITCKPN 259

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKWEE K LFN
Sbjct: 260 VICYSTIIDGLCKDGLEDKARELFEEMKAQGMLPDVISYSSLIHGFCYGGKWEEAKSLFN 319

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VD  VQPN+VT                                               
Sbjct: 320 EMVDHGVQPNVVTFNVLMDMLCKAGKVIEAKELLELMVQGGNNAPDLFTYNTLMDGFCLV 379

Query: 241 --------------------SQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTY 272
                               +  SY +LIN YCK  K+EEA KLYNEMLQV +RPS  TY
Sbjct: 380 GDLNSARELFINMPNKGCEPNVISYNVLINGYCKNWKMEEAMKLYNEMLQVGIRPSVITY 439

[Close]

BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 180/501 (35.93%), Postives = 216/501 (43.11%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           M LAGL P ++TLNIL++ LCNVNRV E L A+AGILR GYIPD VTY TLIKG      
Sbjct: 66  MCLAGLSPSVVTLNILVNCLCNVNRVSEALAALAGILRRGYIPDIVTYNTLIKGLCMEHR 125

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N+NIALKLHQ ML++TS+YGINC   
Sbjct: 126 ISEATRLFLRMQKLGCTPNVVTYGTLIKGLCQTGNVNIALKLHQEMLNDTSQYGINCKPN 185

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKW+E+K+LF+
Sbjct: 186 VISYSIIIDGLCKVGREDEAKETFEEMKAQGMVPNVISYSSLIHGFCCAGKWDESKQLFD 245

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VDQ VQPN VT                                               
Sbjct: 246 EMVDQGVQPNKVTFSVLIDTLCKEGKVIEAKKLLELMIESGIVPNVFTYNSLLKGFCMVG 305

Query: 241 ----SQE---------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
               ++E               SYT+LIN YCKT KVEEA KLYN+ML V  RP+  TYG
Sbjct: 306 DLNSARELFVSMPSKGCEPDVISYTVLINGYCKTLKVEEAMKLYNKMLLVGKRPNVITYG 365

[Close]

BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A6J1GP31 (putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111456184 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 177/500 (35.40%), Postives = 214/500 (42.80%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           M LAGLLP  +TLNIL++ LCNVNR+ EGL AMAGI+R G+IP+ VTYT+LIKG      
Sbjct: 138 MSLAGLLPNYITLNILLNCLCNVNRISEGLAAMAGIIRRGFIPNIVTYTSLIKGLCMEHR 197

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N NIALKLH+ ML+ T RYGI+C   
Sbjct: 198 ISEATRLFMRMQKLGCRPNVITYGTLIKGLCQTGNTNIALKLHEEMLNGTGRYGISCKPN 257

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                            GKWEE K LFN
Sbjct: 258 VISYSTIIDGLCKDGREDKARELFEEMKARRMLPDVISYSSLIHGFCNGGKWEEAKCLFN 317

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VD  +QPN VT                                               
Sbjct: 318 EMVDLGIQPNAVTFNVLMDILCKAGKVIEANELLEVMIQRGNVPDLFTYNTLMDGFCLVS 377

Query: 241 -------------------SQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
                              +  SY +LIN YCK  KVEEA K+YNEMLQV ++PS  TY 
Sbjct: 378 DLDSARELFLSMPSKGCEPNVISYNVLINGYCKNWKVEEAMKIYNEMLQVGIKPSMITYN 437

[Close]

BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 180/501 (35.93%), Postives = 212/501 (42.32%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           MRLAGL P  +TLNIL++ LCNVNRV E L  MAG+LR GYIP+ VTYTTLIKG      
Sbjct: 66  MRLAGLSPSAITLNILVNCLCNVNRVSEALAGMAGLLRRGYIPNVVTYTTLIKGLCMEHR 125

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N+NIALKLHQ ML++TS+YGINC   
Sbjct: 126 ISEATRLFLRMQKLGCTPNVVTYGTLVKGLCQTGNVNIALKLHQEMLNDTSQYGINCKPN 185

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                             KWEE+KRLF+
Sbjct: 186 VFNYNIIIDGLCKVGREDEANELFEEMKAQGMIPNVISYSSLIHGFCCARKWEESKRLFD 245

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VDQ VQP+ VT                                               
Sbjct: 246 EMVDQGVQPDKVTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCMVG 305

Query: 241 ----SQE---------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
               ++E               SYT+LIN YCKT KVEEA KLYNEML V  RP+  TYG
Sbjct: 306 DLNSARELFVSMPSKGCEPDVISYTVLINGYCKTLKVEEAMKLYNEMLLVGKRPNVITYG 365

[Close]

BLAST of CaUC09G178250 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 180/501 (35.93%), Postives = 212/501 (42.32%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKG------ 60
           MRLAGL P  +TLNIL++ LCNVNRV E L  MAG+LR GYIP+ VTYTTLIKG      
Sbjct: 66  MRLAGLSPSAITLNILVNCLCNVNRVSEALAGMAGLLRRGYIPNVVTYTTLIKGLCMEHR 125

Query: 61  -------------------------LLKGLYRTWNINIALKLHQGMLHETSRYGINC--- 120
                                    L+KGL +T N+NIALKLHQ ML++TS+YGINC   
Sbjct: 126 ISEATRLFLRMQKLGCTPNVVTYGTLVKGLCQTGNVNIALKLHQEMLNDTSQYGINCKPN 185

Query: 121 -------------------------------------------------GKWEETKRLFN 180
                                                             KWEE+KRLF+
Sbjct: 186 VFNYNIIIDGLCKVGREDEANELFEEMKAQGMIPNVISYSSLIHGFCCARKWEESKRLFD 245

Query: 181 ETVDQSVQPNMVT----------------------------------------------- 240
           E VDQ VQP+ VT                                               
Sbjct: 246 EMVDQGVQPDKVTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCMVG 305

Query: 241 ----SQE---------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYG 271
               ++E               SYT+LIN YCKT KVEEA KLYNEML V  RP+  TYG
Sbjct: 306 DLNSARELFVSMPSKGCEPDVISYTVLINGYCKTLKVEEAMKLYNEMLLVGKRPNVITYG 365

[Close]

BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G64583.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-32
Identity = 89/289 (30.80%), Postives = 147/289 (50.87%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G  P ++T   L+   C VNR+ +    +  +++SGY P+ V Y TLI GL K   
Sbjct: 132 MMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCK--- 191

Query: 61  RTWNINIALKLHQGMLHETSRYGINC---------------GKWEETKRLFNETVDQSVQ 120
               +NIAL+L    L+E  + G+                 G+W +  R+  + + +S+ 
Sbjct: 192 -NGELNIALEL----LNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN 251

Query: 121 PNMVTSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSD 180
           P++VT    +T LI+V+ K   ++EA++LY EM+Q  + P+  TY  ++ GL   G + D
Sbjct: 252 PDVVT----FTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 311

Query: 181 AKMLFGVFKAY----DVATYSIMIHGLCKEGQVEKVDGRKWLY----------IITYNTL 240
           AK  F +  +     +V TY+ +I G CK   V+  +G K             I TYNTL
Sbjct: 312 AKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVD--EGMKLFQRMSCEGFNADIFTYNTL 371

Query: 241 LHGFCKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECL 261
           +HG+C+  K +  ++I   MV + V+P +IT+ I++  L  N + +  L
Sbjct: 372 IHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESAL 406

[Close]

BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 8.5e-32
Identity = 87/285 (30.53%), Postives = 142/285 (49.82%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G  P ++TL  L++  C  NR +E +  +  +   G++P+ V Y T+I GL K   
Sbjct: 140 MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR- 199

Query: 61  RTWNINIALKL-----HQGMLHETSRYGI------NCGKWEETKRLFNETVDQSVQPNMV 120
              ++N AL++      +G+  +   Y        N G+W +  RL  + V + + PN++
Sbjct: 200 ---DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVI 259

Query: 121 TSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKML 180
                +T LI+ + K   + EA+ LY EM++  + P+  TY  L+ G    G + DAK +
Sbjct: 260 ----FFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 319

Query: 181 FGVFKAY----DVATYSIMIHGLCKEGQVEKVDGRKWLY----------IITYNTLLHGF 240
           F +  +     DV TY+ +I G CK  +VE  DG K               TYNTL+HG+
Sbjct: 320 FDLMVSKGCFPDVVTYNTLITGFCKSKRVE--DGMKLFCEMTYQGLVGDAFTYNTLIHGY 379

Query: 241 CKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECL 261
           C+  K     ++ +RMV   VSP ++TY I++  L  N K ++ L
Sbjct: 380 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKAL 414

[Close]

BLAST of CaUC09G178250 vs. TAIR 10
Match: AT3G16710.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-30
Identity = 84/285 (29.47%), Postives = 141/285 (49.47%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G  P L+T   L++  C+ NR+++ +     IL  G+ P+ VTYTTLI+ L K  +
Sbjct: 144 MMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRH 203

Query: 61  RTWNINIALKLHQGMLHETSRYGI-----------NCGKWEETKRLFNETVDQSVQPNMV 120
               +N A++L   M    SR  +             G+W +   L  + + + ++PN++
Sbjct: 204 ----LNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVI 263

Query: 121 TSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKML 180
           T    +T LI+ + K  K+ EAK+LYN M+Q+ + P   TYG L+ GL   G + +A+ +
Sbjct: 264 T----FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQM 323

Query: 181 FGVFKAY----DVATYSIMIHGLCKEGQVEKVDGRKWLY----------IITYNTLLHGF 240
           F + +      +   Y+ +IHG CK  +VE  DG K  Y           ITY  L+ G+
Sbjct: 324 FYLMERNGCYPNEVIYTTLIHGFCKSKRVE--DGMKIFYEMSQKGVVANTITYTVLIQGY 383

Query: 241 CKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECL 261
           C   +     E+ ++M  +   P + TY +++  L  N K ++ L
Sbjct: 384 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKAL 418

[Close]

BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G62680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-27
Identity = 87/296 (29.39%), Postives = 132/296 (44.59%), Query Frame = 0


Query: 5   GLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKG-----L 64
           G  P ++  N +ID LC   RV +       I R G  P+ VTYT L+ GL         
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 65  YRTWNINIALKLHQGMLHETSRYG--INCGKWEETKRLFNETVDQSVQPNMVTSQE---- 124
            R  +  I  K+   ++  ++     +  GK  E K LF E V  S+ P++VT       
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 125 ---------------------------SYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPS 184
                                      SY  LIN +CK  +VE+  KL+ EM Q  +  +
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 185 ARTYGVLLKGLFQVGNVSDAKMLFGVFKAY----DVATYSIMIHGLCKEGQVEKV----- 244
             TY  L++G FQ G+V  A+  F     +    D+ TY+I++ GLC  G++EK      
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 245 DGRKW---LYIITYNTLLHGFCKGNKSKEVIEILHRMVQKDVSPSVITYTIVVGML 251
           D +K    L I+TY T++ G CK  K +E   +   +  K + P ++TYT ++  L
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL 480

[Close]

BLAST of CaUC09G178250 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 8.2e-27
Identity = 80/285 (28.07%), Postives = 134/285 (47.02%), Query Frame = 0


Query: 1   MRLAGLLPGLMTLNILIDWLCNVNRVKEGLVAMAGILRSGYIPDTVTYTTLIKGLLKGLY 60
           M   G+ P ++T N LI+ LCN  R  +    ++ +L     P+ VT+  LI       +
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALI----DAFF 343

Query: 61  RTWNINIALKLHQGMLH-----ETSRYGINC------GKWEETKRLFNETVDQSVQPNMV 120
           +   +  A KLH+ M+      +T  Y +         + +E K++F   V +   PN+ 
Sbjct: 344 KEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNI- 403

Query: 121 TSQESYTMLINVYCKTSKVEEAKKLYNEMLQVRMRPSARTYGVLLKGLFQVGNVSDAKML 180
              ++Y  LIN +CK  +VE+  +L+ EM Q  +  +  TY  +++G FQ G+   A+M+
Sbjct: 404 ---QTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 463

Query: 181 FGVFKA----YDVATYSIMIHGLCKEGQVEKV--------DGRKWLYIITYNTLLHGFCK 240
           F    +     D+ TYSI++HGLC  G+++               L I  YNT++ G CK
Sbjct: 464 FKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCK 523

Query: 241 GNKSKEVIEILHRMVQKDVSPSVITYTIVVGMLSKNEKYQECLDL 263
             K  E  ++   +    + P V+TY  ++  L      QE  DL
Sbjct: 524 AGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDL 557

The following BLAST results are available for this feature:

BLAST of CaUC09G178250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896203.1	6.2e-69	37.92	pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida]	[more]
KGN45331.2	6.7e-63	36.33	hypothetical protein Csa_015776 [Cucumis sativus]	[more]
XP_011659273.2	1.5e-62	36.20	pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sa...	[more]
XP_022155826.1	7.4e-62	35.79	pentatricopeptide repeat-containing protein At1g63330-like [Momordica charantia]	[more]
KAA0059713.1	8.2e-61	35.93	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151...	[more]

BLAST of CaUC09G178250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C7R3	7.0e-31	30.80	Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidop...	[more]
Q0WKZ3	1.2e-30	30.53	Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX...	[more]
Q9LUR2	3.8e-29	29.47	Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS...	[more]
Q3ECK2	4.0e-26	29.39	Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop...	[more]
Q9CAM8	1.2e-25	28.07	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]

BLAST of CaUC09G178250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSW3	3.6e-62	35.79	pentatricopeptide repeat-containing protein At1g63330-like OS=Momordica charanti...	[more]
A0A5A7UUW8	3.9e-61	35.93	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1GP31	1.1e-60	35.40	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS...	[more]
A0A1S4DYL6	2.0e-60	35.93	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc...	[more]
A0A5D3C8J0	2.0e-60	35.93	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CaUC09G178250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64583.1	5.0e-32	30.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G64580.1	8.5e-32	30.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G16710.1	2.7e-30	29.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62680.1	2.8e-27	29.39	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	8.2e-27	28.07	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 114..158 e-value: 1.0E-12 score: 48.1 coord: 9..57 e-value: 2.9E-8 score: 33.8 coord: 205..251 e-value: 1.8E-12 score: 47.3
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 177..196 e-value: 1.6E-6 score: 27.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 180..197 e-value: 1.1E-4 score: 20.1 coord: 114..146 e-value: 1.2E-8 score: 32.6 coord: 206..240 e-value: 1.2E-8 score: 32.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 204..238 score: 11.39981
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 111..145 score: 11.717688
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..77 e-value: 1.8E-8 score: 36.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 202..287 e-value: 6.8E-13 score: 50.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 84..201 e-value: 1.1E-24 score: 88.8
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 86..263
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 1..196
None	No IPR available	PANTHER	PTHR47933:SF17	PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN	coord: 86..263 coord: 1..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G178250.1	CaUC09G178250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding